data_4X60 # _model_server_result.job_id 4k7Hml9RTJXR8UTZKHNHzg _model_server_result.datetime_utc '2024-11-22 13:39:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x60 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 4X60 # _exptl.entry_id 4X60 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 381.387 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SINEFUNGIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4X60 _cell.length_a 103.67 _cell.length_b 137.96 _cell.length_c 179.01 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X60 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H23 N7 O5' _chem_comp.formula_weight 381.387 _chem_comp.id SFG _chem_comp.mon_nstd_flag . _chem_comp.name SINEFUNGIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ADENOSYL-ORNITHINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SFG sing 359 n n N HN1 SFG sing 360 n n N HN2 SFG sing 361 n n CA C SFG sing 362 n n CA CB SFG sing 363 n n CA HA SFG sing 364 n n C O SFG doub 365 n n C OXT SFG sing 366 n n OXT HXT SFG sing 367 n n CB CG SFG sing 368 n n CB HB1 SFG sing 369 n n CB HB2 SFG sing 370 n n CG CD SFG sing 371 n n CG HG1 SFG sing 372 n n CG HG2 SFG sing 373 n n CD NE SFG sing 374 n n CD C5' SFG sing 375 n n CD HD SFG sing 376 n n NE HNE1 SFG sing 377 n n NE HNE2 SFG sing 378 n n C5' C4' SFG sing 379 n n C5' "H5'1" SFG sing 380 n n C5' "H5'2" SFG sing 381 n n C4' O4' SFG sing 382 n n C4' C3' SFG sing 383 n n C4' H4' SFG sing 384 n n O4' C1' SFG sing 385 n n C3' O3' SFG sing 386 n n C3' C2' SFG sing 387 n n C3' H3' SFG sing 388 n n O3' HO3' SFG sing 389 n n C2' O2' SFG sing 390 n n C2' C1' SFG sing 391 n n C2' H2' SFG sing 392 n n O2' HO2' SFG sing 393 n n C1' N9 SFG sing 394 n n C1' H1' SFG sing 395 n n N9 C8 SFG sing 396 n y N9 C4 SFG sing 397 n y C8 N7 SFG doub 398 n y C8 H8 SFG sing 399 n n N7 C5 SFG sing 400 n y C5 C6 SFG sing 401 n y C5 C4 SFG doub 402 n y C6 N6 SFG sing 403 n n C6 N1 SFG doub 404 n y N6 HN61 SFG sing 405 n n N6 HN62 SFG sing 406 n n N1 C2 SFG sing 407 n y C2 N3 SFG doub 408 n y C2 H2 SFG sing 409 n n N3 C4 SFG sing 410 n y # _atom_sites.entry_id 4X60 _atom_sites.fract_transf_matrix[1][1] 0.009646 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007248 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005586 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SFG A 1 701 1 SFG SFG . D 4 3XV A 1 702 1 3XV EPZ . E 5 GOL A 1 703 1 GOL GOL . F 5 GOL A 1 704 2 GOL GOL . G 5 GOL A 1 705 3 GOL GOL . H 6 HOH A 1 801 137 HOH HOH . H 6 HOH A 2 802 37 HOH HOH . H 6 HOH A 3 803 81 HOH HOH . H 6 HOH A 4 804 61 HOH HOH . H 6 HOH A 5 805 14 HOH HOH . H 6 HOH A 6 806 9 HOH HOH . H 6 HOH A 7 807 36 HOH HOH . H 6 HOH A 8 808 32 HOH HOH . H 6 HOH A 9 809 33 HOH HOH . H 6 HOH A 10 810 129 HOH HOH . H 6 HOH A 11 811 45 HOH HOH . H 6 HOH A 12 812 128 HOH HOH . H 6 HOH A 13 813 87 HOH HOH . H 6 HOH A 14 814 82 HOH HOH . H 6 HOH A 15 815 76 HOH HOH . H 6 HOH A 16 816 70 HOH HOH . H 6 HOH A 17 817 1 HOH HOH . H 6 HOH A 18 818 2 HOH HOH . H 6 HOH A 19 819 3 HOH HOH . H 6 HOH A 20 820 4 HOH HOH . H 6 HOH A 21 821 5 HOH HOH . H 6 HOH A 22 822 6 HOH HOH . H 6 HOH A 23 823 8 HOH HOH . H 6 HOH A 24 824 10 HOH HOH . H 6 HOH A 25 825 11 HOH HOH . H 6 HOH A 26 826 12 HOH HOH . H 6 HOH A 27 827 13 HOH HOH . H 6 HOH A 28 828 15 HOH HOH . H 6 HOH A 29 829 16 HOH HOH . H 6 HOH A 30 830 17 HOH HOH . H 6 HOH A 31 831 20 HOH HOH . H 6 HOH A 32 832 21 HOH HOH . H 6 HOH A 33 833 22 HOH HOH . H 6 HOH A 34 834 23 HOH HOH . H 6 HOH A 35 835 24 HOH HOH . H 6 HOH A 36 836 26 HOH HOH . H 6 HOH A 37 837 27 HOH HOH . H 6 HOH A 38 838 28 HOH HOH . H 6 HOH A 39 839 29 HOH HOH . H 6 HOH A 40 840 30 HOH HOH . H 6 HOH A 41 841 31 HOH HOH . H 6 HOH A 42 842 34 HOH HOH . H 6 HOH A 43 843 35 HOH HOH . H 6 HOH A 44 844 38 HOH HOH . H 6 HOH A 45 845 39 HOH HOH . H 6 HOH A 46 846 40 HOH HOH . H 6 HOH A 47 847 42 HOH HOH . H 6 HOH A 48 848 44 HOH HOH . H 6 HOH A 49 849 46 HOH HOH . H 6 HOH A 50 850 49 HOH HOH . H 6 HOH A 51 851 50 HOH HOH . H 6 HOH A 52 852 51 HOH HOH . H 6 HOH A 53 853 52 HOH HOH . H 6 HOH A 54 854 54 HOH HOH . H 6 HOH A 55 855 57 HOH HOH . H 6 HOH A 56 856 58 HOH HOH . H 6 HOH A 57 857 59 HOH HOH . H 6 HOH A 58 858 60 HOH HOH . H 6 HOH A 59 859 63 HOH HOH . H 6 HOH A 60 860 64 HOH HOH . H 6 HOH A 61 861 65 HOH HOH . H 6 HOH A 62 862 66 HOH HOH . H 6 HOH A 63 863 68 HOH HOH . H 6 HOH A 64 864 69 HOH HOH . H 6 HOH A 65 865 71 HOH HOH . H 6 HOH A 66 866 72 HOH HOH . H 6 HOH A 67 867 73 HOH HOH . H 6 HOH A 68 868 74 HOH HOH . H 6 HOH A 69 869 75 HOH HOH . H 6 HOH A 70 870 77 HOH HOH . H 6 HOH A 71 871 78 HOH HOH . H 6 HOH A 72 872 79 HOH HOH . H 6 HOH A 73 873 80 HOH HOH . H 6 HOH A 74 874 83 HOH HOH . H 6 HOH A 75 875 84 HOH HOH . H 6 HOH A 76 876 85 HOH HOH . H 6 HOH A 77 877 86 HOH HOH . H 6 HOH A 78 878 88 HOH HOH . H 6 HOH A 79 879 89 HOH HOH . H 6 HOH A 80 880 90 HOH HOH . H 6 HOH A 81 881 91 HOH HOH . H 6 HOH A 82 882 92 HOH HOH . H 6 HOH A 83 883 93 HOH HOH . H 6 HOH A 84 884 94 HOH HOH . H 6 HOH A 85 885 107 HOH HOH . H 6 HOH A 86 886 108 HOH HOH . H 6 HOH A 87 887 110 HOH HOH . H 6 HOH A 88 888 111 HOH HOH . H 6 HOH A 89 889 112 HOH HOH . H 6 HOH A 90 890 113 HOH HOH . H 6 HOH A 91 891 114 HOH HOH . H 6 HOH A 92 892 115 HOH HOH . H 6 HOH A 93 893 116 HOH HOH . H 6 HOH A 94 894 117 HOH HOH . H 6 HOH A 95 895 118 HOH HOH . H 6 HOH A 96 896 119 HOH HOH . H 6 HOH A 97 897 120 HOH HOH . H 6 HOH A 98 898 121 HOH HOH . H 6 HOH A 99 899 122 HOH HOH . H 6 HOH A 100 900 123 HOH HOH . H 6 HOH A 101 901 124 HOH HOH . H 6 HOH A 102 902 125 HOH HOH . H 6 HOH A 103 903 126 HOH HOH . H 6 HOH A 104 904 127 HOH HOH . H 6 HOH A 105 905 130 HOH HOH . H 6 HOH A 106 906 131 HOH HOH . H 6 HOH A 107 907 132 HOH HOH . H 6 HOH A 108 908 133 HOH HOH . H 6 HOH A 109 909 135 HOH HOH . H 6 HOH A 110 910 136 HOH HOH . H 6 HOH A 111 911 140 HOH HOH . I 6 HOH B 1 401 48 HOH HOH . I 6 HOH B 2 402 25 HOH HOH . I 6 HOH B 3 403 7 HOH HOH . I 6 HOH B 4 404 18 HOH HOH . I 6 HOH B 5 405 41 HOH HOH . I 6 HOH B 6 406 43 HOH HOH . I 6 HOH B 7 407 47 HOH HOH . I 6 HOH B 8 408 53 HOH HOH . I 6 HOH B 9 409 55 HOH HOH . I 6 HOH B 10 410 56 HOH HOH . I 6 HOH B 11 411 62 HOH HOH . I 6 HOH B 12 412 67 HOH HOH . I 6 HOH B 13 413 95 HOH HOH . I 6 HOH B 14 414 97 HOH HOH . I 6 HOH B 15 415 98 HOH HOH . I 6 HOH B 16 416 99 HOH HOH . I 6 HOH B 17 417 100 HOH HOH . I 6 HOH B 18 418 101 HOH HOH . I 6 HOH B 19 419 102 HOH HOH . I 6 HOH B 20 420 103 HOH HOH . I 6 HOH B 21 421 104 HOH HOH . I 6 HOH B 22 422 105 HOH HOH . I 6 HOH B 23 423 106 HOH HOH . I 6 HOH B 24 424 109 HOH HOH . I 6 HOH B 25 425 134 HOH HOH . I 6 HOH B 26 426 138 HOH HOH . I 6 HOH B 27 427 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SFG . . . C 3 23.847 -36.338 -6.683 1 43.5 ? N SFG 701 A 1 HETATM 2 C CA SFG . . . C 3 24.337 -37.623 -6.207 1 44 ? CA SFG 701 A 1 HETATM 3 C C SFG . . . C 3 25.235 -38.223 -7.234 1 43.61 ? C SFG 701 A 1 HETATM 4 O O SFG . . . C 3 25.032 -37.948 -8.443 1 41.1 ? O SFG 701 A 1 HETATM 5 O OXT SFG . . . C 3 26.146 -38.971 -6.822 1 44.61 ? OXT SFG 701 A 1 HETATM 6 C CB SFG . . . C 3 23.196 -38.601 -5.947 1 46.08 ? CB SFG 701 A 1 HETATM 7 C CG SFG . . . C 3 22.09 -38.533 -6.997 1 47.42 ? CG SFG 701 A 1 HETATM 8 C CD SFG . . . C 3 21.012 -39.549 -6.685 1 47.68 ? CD SFG 701 A 1 HETATM 9 N NE SFG . . . C 3 20.82 -40.375 -7.871 1 51.54 ? NE SFG 701 A 1 HETATM 10 C C5' SFG . . . C 3 19.718 -38.824 -6.316 1 45.89 ? C5' SFG 701 A 1 HETATM 11 C C4' SFG . . . C 3 19.734 -38.164 -4.929 1 44.49 ? C4' SFG 701 A 1 HETATM 12 O O4' SFG . . . C 3 18.587 -37.315 -4.83 1 44.42 ? O4' SFG 701 A 1 HETATM 13 C C3' SFG . . . C 3 19.607 -39.174 -3.79 1 44.39 ? C3' SFG 701 A 1 HETATM 14 O O3' SFG . . . C 3 20.645 -38.977 -2.815 1 41.9 ? O3' SFG 701 A 1 HETATM 15 C C2' SFG . . . C 3 18.223 -38.93 -3.215 1 42.64 ? C2' SFG 701 A 1 HETATM 16 O O2' SFG . . . C 3 18.202 -39.156 -1.807 1 45.71 ? O2' SFG 701 A 1 HETATM 17 C C1' SFG . . . C 3 17.942 -37.483 -3.564 1 41.58 ? C1' SFG 701 A 1 HETATM 18 N N9 SFG . . . C 3 16.52 -37.142 -3.79 1 37.99 ? N9 SFG 701 A 1 HETATM 19 C C8 SFG . . . C 3 15.67 -37.867 -4.531 1 39.48 ? C8 SFG 701 A 1 HETATM 20 N N7 SFG . . . C 3 14.439 -37.284 -4.579 1 39.36 ? N7 SFG 701 A 1 HETATM 21 C C5 SFG . . . C 3 14.508 -36.148 -3.864 1 36.73 ? C5 SFG 701 A 1 HETATM 22 C C6 SFG . . . C 3 13.556 -35.077 -3.533 1 38.76 ? C6 SFG 701 A 1 HETATM 23 N N6 SFG . . . C 3 12.274 -35.142 -3.998 1 39.61 ? N6 SFG 701 A 1 HETATM 24 N N1 SFG . . . C 3 14 -34.056 -2.755 1 42.02 ? N1 SFG 701 A 1 HETATM 25 C C2 SFG . . . C 3 15.274 -34.024 -2.303 1 39.5 ? C2 SFG 701 A 1 HETATM 26 N N3 SFG . . . C 3 16.189 -34.976 -2.59 1 39.02 ? N3 SFG 701 A 1 HETATM 27 C C4 SFG . . . C 3 15.877 -36.048 -3.357 1 36.56 ? C4 SFG 701 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #