data_4X61 # _model_server_result.job_id kEsrl2Lbk3LfoBeHfqshMg _model_server_result.datetime_utc '2024-12-26 15:56:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x61 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 4X61 # _exptl.entry_id 4X61 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4X61 _cell.length_a 102.317 _cell.length_b 138.167 _cell.length_c 178.007 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X61 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 346 n n N HN1 SAM sing 347 n n N HN2 SAM sing 348 n n CA C SAM sing 349 n n CA CB SAM sing 350 n n CA HA SAM sing 351 n n C O SAM doub 352 n n C OXT SAM sing 353 n n CB CG SAM sing 354 n n CB HB1 SAM sing 355 n n CB HB2 SAM sing 356 n n CG SD SAM sing 357 n n CG HG1 SAM sing 358 n n CG HG2 SAM sing 359 n n SD CE SAM sing 360 n n SD C5' SAM sing 361 n n CE HE1 SAM sing 362 n n CE HE2 SAM sing 363 n n CE HE3 SAM sing 364 n n C5' C4' SAM sing 365 n n C5' "H5'1" SAM sing 366 n n C5' "H5'2" SAM sing 367 n n C4' O4' SAM sing 368 n n C4' C3' SAM sing 369 n n C4' H4' SAM sing 370 n n O4' C1' SAM sing 371 n n C3' O3' SAM sing 372 n n C3' C2' SAM sing 373 n n C3' H3' SAM sing 374 n n O3' HO3' SAM sing 375 n n C2' O2' SAM sing 376 n n C2' C1' SAM sing 377 n n C2' H2' SAM sing 378 n n O2' HO2' SAM sing 379 n n C1' N9 SAM sing 380 n n C1' H1' SAM sing 381 n n N9 C8 SAM sing 382 n y N9 C4 SAM sing 383 n y C8 N7 SAM doub 384 n y C8 H8 SAM sing 385 n n N7 C5 SAM sing 386 n y C5 C6 SAM sing 387 n y C5 C4 SAM doub 388 n y C6 N6 SAM sing 389 n n C6 N1 SAM doub 390 n y N6 HN61 SAM sing 391 n n N6 HN62 SAM sing 392 n n N1 C2 SAM sing 393 n y C2 N3 SAM doub 394 n y C2 H2 SAM sing 395 n n N3 C4 SAM sing 396 n y # _atom_sites.entry_id 4X61 _atom_sites.fract_transf_matrix[1][1] 0.009774 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007238 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005618 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SAM A 1 701 1 SAM SAM . D 4 3XV A 1 702 1 3XV EPZ . E 5 GOL A 1 703 1 GOL GOL . F 6 HOH A 1 801 27 HOH HOH . F 6 HOH A 2 802 24 HOH HOH . F 6 HOH A 3 803 28 HOH HOH . F 6 HOH A 4 804 9 HOH HOH . F 6 HOH A 5 805 30 HOH HOH . F 6 HOH A 6 806 57 HOH HOH . F 6 HOH A 7 807 52 HOH HOH . F 6 HOH A 8 808 39 HOH HOH . F 6 HOH A 9 809 29 HOH HOH . F 6 HOH A 10 810 1 HOH HOH . F 6 HOH A 11 811 4 HOH HOH . F 6 HOH A 12 812 5 HOH HOH . F 6 HOH A 13 813 6 HOH HOH . F 6 HOH A 14 814 8 HOH HOH . F 6 HOH A 15 815 10 HOH HOH . F 6 HOH A 16 816 11 HOH HOH . F 6 HOH A 17 817 13 HOH HOH . F 6 HOH A 18 818 14 HOH HOH . F 6 HOH A 19 819 16 HOH HOH . F 6 HOH A 20 820 17 HOH HOH . F 6 HOH A 21 821 18 HOH HOH . F 6 HOH A 22 822 20 HOH HOH . F 6 HOH A 23 823 21 HOH HOH . F 6 HOH A 24 824 22 HOH HOH . F 6 HOH A 25 825 25 HOH HOH . F 6 HOH A 26 826 31 HOH HOH . F 6 HOH A 27 827 32 HOH HOH . F 6 HOH A 28 828 33 HOH HOH . F 6 HOH A 29 829 34 HOH HOH . F 6 HOH A 30 830 36 HOH HOH . F 6 HOH A 31 831 37 HOH HOH . F 6 HOH A 32 832 38 HOH HOH . F 6 HOH A 33 833 40 HOH HOH . F 6 HOH A 34 834 41 HOH HOH . F 6 HOH A 35 835 43 HOH HOH . F 6 HOH A 36 836 44 HOH HOH . F 6 HOH A 37 837 47 HOH HOH . F 6 HOH A 38 838 48 HOH HOH . F 6 HOH A 39 839 49 HOH HOH . F 6 HOH A 40 840 50 HOH HOH . F 6 HOH A 41 841 51 HOH HOH . F 6 HOH A 42 842 53 HOH HOH . F 6 HOH A 43 843 54 HOH HOH . F 6 HOH A 44 844 55 HOH HOH . F 6 HOH A 45 845 56 HOH HOH . F 6 HOH A 46 846 58 HOH HOH . F 6 HOH A 47 847 59 HOH HOH . F 6 HOH A 48 848 60 HOH HOH . F 6 HOH A 49 849 61 HOH HOH . G 6 HOH B 1 401 19 HOH HOH . G 6 HOH B 2 402 3 HOH HOH . G 6 HOH B 3 403 7 HOH HOH . G 6 HOH B 4 404 12 HOH HOH . G 6 HOH B 5 405 15 HOH HOH . G 6 HOH B 6 406 35 HOH HOH . G 6 HOH B 7 407 42 HOH HOH . G 6 HOH B 8 408 45 HOH HOH . G 6 HOH B 9 409 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . C 3 23.674 -36.492 -7.039 1 51.95 ? N SAM 701 A 1 HETATM 2 C CA SAM . . . C 3 24.059 -37.682 -6.303 1 51.86 ? CA SAM 701 A 1 HETATM 3 C C SAM . . . C 3 25.082 -38.455 -7.083 1 51.41 ? C SAM 701 A 1 HETATM 4 O O SAM . . . C 3 25.082 -38.37 -8.329 1 50.26 ? O SAM 701 A 1 HETATM 5 O OXT SAM . . . C 3 25.901 -39.151 -6.449 1 52.45 ? OXT SAM 701 A 1 HETATM 6 C CB SAM . . . C 3 22.848 -38.559 -5.967 1 52.13 ? CB SAM 701 A 1 HETATM 7 C CG SAM . . . C 3 21.914 -38.87 -7.137 1 52.9 ? CG SAM 701 A 1 HETATM 8 S SD SAM . . . C 3 20.704 -39.895 -6.619 1 53.19 ? SD SAM 701 A 1 HETATM 9 C CE SAM . . . C 3 20.374 -41.017 -7.798 1 53.06 ? CE SAM 701 A 1 HETATM 10 C C5' SAM . . . C 3 19.304 -39.057 -6.28 1 50.98 ? C5' SAM 701 A 1 HETATM 11 C C4' SAM . . . C 3 19.405 -38.351 -4.928 1 50.46 ? C4' SAM 701 A 1 HETATM 12 O O4' SAM . . . C 3 18.387 -37.357 -4.804 1 50.01 ? O4' SAM 701 A 1 HETATM 13 C C3' SAM . . . C 3 19.238 -39.298 -3.754 1 50.18 ? C3' SAM 701 A 1 HETATM 14 O O3' SAM . . . C 3 20.318 -39.057 -2.847 1 49.38 ? O3' SAM 701 A 1 HETATM 15 C C2' SAM . . . C 3 17.904 -38.928 -3.133 1 50.29 ? C2' SAM 701 A 1 HETATM 16 O O2' SAM . . . C 3 17.937 -38.996 -1.707 1 52.82 ? O2' SAM 701 A 1 HETATM 17 C C1' SAM . . . C 3 17.675 -37.502 -3.58 1 49.33 ? C1' SAM 701 A 1 HETATM 18 N N9 SAM . . . C 3 16.25 -37.211 -3.838 1 49.1 ? N9 SAM 701 A 1 HETATM 19 C C8 SAM . . . C 3 15.388 -37.969 -4.537 1 49.27 ? C8 SAM 701 A 1 HETATM 20 N N7 SAM . . . C 3 14.16 -37.391 -4.585 1 49.71 ? N7 SAM 701 A 1 HETATM 21 C C5 SAM . . . C 3 14.232 -36.232 -3.908 1 49.41 ? C5 SAM 701 A 1 HETATM 22 C C6 SAM . . . C 3 13.304 -35.131 -3.569 1 50 ? C6 SAM 701 A 1 HETATM 23 N N6 SAM . . . C 3 12.017 -35.157 -3.98 1 51.1 ? N6 SAM 701 A 1 HETATM 24 N N1 SAM . . . C 3 13.783 -34.096 -2.843 1 50.98 ? N1 SAM 701 A 1 HETATM 25 C C2 SAM . . . C 3 15.064 -34.056 -2.425 1 50.75 ? C2 SAM 701 A 1 HETATM 26 N N3 SAM . . . C 3 15.96 -35.025 -2.693 1 49.69 ? N3 SAM 701 A 1 HETATM 27 C C4 SAM . . . C 3 15.614 -36.117 -3.42 1 49.58 ? C4 SAM 701 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #