data_4X63 # _model_server_result.job_id yfFga9FA-tI9IWsT4dIVzg _model_server_result.datetime_utc '2024-11-22 13:54:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x63 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 4X63 # _exptl.entry_id 4X63 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4X63 _cell.length_a 102.403 _cell.length_b 138.065 _cell.length_c 178.252 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X63 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 208 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 255 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 247 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.031 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 333 n n N HN1 SAH sing 334 n n N HN2 SAH sing 335 n n CA CB SAH sing 336 n n CA C SAH sing 337 n n CA HA SAH sing 338 n n CB CG SAH sing 339 n n CB HB1 SAH sing 340 n n CB HB2 SAH sing 341 n n CG SD SAH sing 342 n n CG HG1 SAH sing 343 n n CG HG2 SAH sing 344 n n SD C5' SAH sing 345 n n C O SAH doub 346 n n C OXT SAH sing 347 n n OXT HXT SAH sing 348 n n C5' C4' SAH sing 349 n n C5' "H5'1" SAH sing 350 n n C5' "H5'2" SAH sing 351 n n C4' O4' SAH sing 352 n n C4' C3' SAH sing 353 n n C4' H4' SAH sing 354 n n O4' C1' SAH sing 355 n n C3' O3' SAH sing 356 n n C3' C2' SAH sing 357 n n C3' H3' SAH sing 358 n n O3' HO3' SAH sing 359 n n C2' O2' SAH sing 360 n n C2' C1' SAH sing 361 n n C2' H2' SAH sing 362 n n O2' HO2' SAH sing 363 n n C1' N9 SAH sing 364 n n C1' H1' SAH sing 365 n n N9 C8 SAH sing 366 n y N9 C4 SAH sing 367 n y C8 N7 SAH doub 368 n y C8 H8 SAH sing 369 n n N7 C5 SAH sing 370 n y C5 C6 SAH sing 371 n y C5 C4 SAH doub 372 n y C6 N6 SAH sing 373 n n C6 N1 SAH doub 374 n y N6 HN61 SAH sing 375 n n N6 HN62 SAH sing 376 n n N1 C2 SAH sing 377 n y C2 N3 SAH doub 378 n y C2 H2 SAH sing 379 n n N3 C4 SAH sing 380 n y # _atom_sites.entry_id 4X63 _atom_sites.fract_transf_matrix[1][1] 0.009765 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007243 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00561 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SAH A 1 701 1 SAH SAH . D 4 3XV A 1 702 1 3XV EPZ . E 5 HOH A 1 801 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 3 23.66 -36.285 -6.969 1 71.44 ? N SAH 701 A 1 HETATM 2 C CA SAH . . . C 3 24.132 -37.555 -6.334 1 72.11 ? CA SAH 701 A 1 HETATM 3 C CB SAH . . . C 3 22.957 -38.45 -5.925 1 72.23 ? CB SAH 701 A 1 HETATM 4 C CG SAH . . . C 3 21.956 -38.748 -7.044 1 71.24 ? CG SAH 701 A 1 HETATM 5 S SD SAH . . . C 3 20.793 -39.957 -6.49 1 68.64 ? SD SAH 701 A 1 HETATM 6 C C SAH . . . C 3 25.058 -38.294 -7.261 1 72.28 ? C SAH 701 A 1 HETATM 7 O O SAH . . . C 3 25.001 -38.146 -8.485 1 71.18 ? O SAH 701 A 1 HETATM 8 O OXT SAH . . . C 3 25.897 -39.073 -6.805 1 72.34 ? OXT SAH 701 A 1 HETATM 9 C C5' SAH . . . C 3 19.336 -38.98 -6.295 1 67.92 ? C5' SAH 701 A 1 HETATM 10 C C4' SAH . . . C 3 19.375 -38.194 -4.985 1 66.91 ? C4' SAH 701 A 1 HETATM 11 O O4' SAH . . . C 3 18.327 -37.218 -4.953 1 65.79 ? O4' SAH 701 A 1 HETATM 12 C C3' SAH . . . C 3 19.193 -39.092 -3.773 1 66.14 ? C3' SAH 701 A 1 HETATM 13 O O3' SAH . . . C 3 20.251 -38.818 -2.851 1 65.04 ? O3' SAH 701 A 1 HETATM 14 C C2' SAH . . . C 3 17.849 -38.698 -3.19 1 65.68 ? C2' SAH 701 A 1 HETATM 15 O O2' SAH . . . C 3 17.869 -38.7 -1.762 1 68.43 ? O2' SAH 701 A 1 HETATM 16 C C1' SAH . . . C 3 17.605 -37.3 -3.724 1 64.28 ? C1' SAH 701 A 1 HETATM 17 N N9 SAH . . . C 3 16.166 -37.044 -3.96 1 62.75 ? N9 SAH 701 A 1 HETATM 18 C C8 SAH . . . C 3 15.333 -37.797 -4.701 1 63.2 ? C8 SAH 701 A 1 HETATM 19 N N7 SAH . . . C 3 14.08 -37.275 -4.713 1 63.09 ? N7 SAH 701 A 1 HETATM 20 C C5 SAH . . . C 3 14.1 -36.157 -3.967 1 62.4 ? C5 SAH 701 A 1 HETATM 21 C C6 SAH . . . C 3 13.12 -35.121 -3.559 1 62.51 ? C6 SAH 701 A 1 HETATM 22 N N6 SAH . . . C 3 11.832 -35.179 -3.963 1 62.29 ? N6 SAH 701 A 1 HETATM 23 N N1 SAH . . . C 3 13.554 -34.11 -2.77 1 64.47 ? N1 SAH 701 A 1 HETATM 24 C C2 SAH . . . C 3 14.836 -34.036 -2.354 1 65.83 ? C2 SAH 701 A 1 HETATM 25 N N3 SAH . . . C 3 15.777 -34.946 -2.684 1 64.7 ? N3 SAH 701 A 1 HETATM 26 C C4 SAH . . . C 3 15.48 -36.009 -3.474 1 62.92 ? C4 SAH 701 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #