data_4X6C
#
_model_server_result.job_id            8S-woEILrFqDGSkrPqzpIw 
_model_server_result.datetime_utc      '2024-11-20 01:46:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4x6c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":302}' 
#
_entry.id    4X6C 
#
_exptl.entry_id    4X6C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.675 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(4R,7R,18Z)-4,7-dihydroxy-N,N,N-trimethyl-10-oxo-3,5,9-trioxa-4-phosphaheptacos-18-en-1-aminium 4-oxide' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4X6C 
_cell.length_a            89.273 
_cell.length_b            142.144 
_cell.length_c            175.752 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4X6C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
? tetrameric 4 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,H,I,J,K,P,Q 1 1 
C,D,E,F,L,M,N,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 K N N 
? 6 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 99 A CYS 102 1_555 A SG CYS 163 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf2 A SG CYS 203 A CYS 206 1_555 A SG CYS 258 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf4 C SG CYS 99 C CYS 102 1_555 C SG CYS 163 C CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf5 C SG CYS 203 C CYS 206 1_555 C SG CYS 258 C CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf6 D SG CYS 25 D CYS 25 1_555 D SG CYS 80 D CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 E SG CYS 23 E CYS 22 1_555 E SG CYS 89 E CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf8 E SG CYS 136 E CYS 135 1_555 E SG CYS 186 E CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf9 E SG CYS 161 E CYS 160 1_555 F SG CYS 172 F CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf10 F SG CYS 23 F CYS 23 1_555 F SG CYS 91 F CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
disulf ? disulf11 F SG CYS 146 F CYS 146 1_555 F SG CYS 211 F CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf12 G SG CYS 23 G CYS 22 1_555 G SG CYS 89 G CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf13 G SG CYS 161 G CYS 160 1_555 H SG CYS 172 H CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf14 H SG CYS 23 H CYS 23 1_555 H SG CYS 91 H CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
disulf ? disulf15 H SG CYS 146 H CYS 146 1_555 H SG CYS 211 H CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
covale ? covale1 A ND2 ASN 54 A ASN 57 1_555 J C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
covale ? covale2 A ND2 ASN 125 A ASN 128 1_555 I C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale3 C ND2 ASN 54 C ASN 57 1_555 L C1 NAG . C NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
#
_chem_comp.formula           'C26 H53 N O7 P 1' 
_chem_comp.formula_weight    522.675 
_chem_comp.id                42H 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(4R,7R,18Z)-4,7-dihydroxy-N,N,N-trimethyl-10-oxo-3,5,9-trioxa-4-phosphaheptacos-18-en-1-aminium 4-oxide' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C19 C18 42H sing 1 n n 
C19 C20 42H sing 2 n n 
C18 C17 42H sing 3 n n 
C17 C16 42H doub 4 z n 
C20 C21 42H sing 5 n n 
C21 C22 42H sing 6 n n 
C22 C23 42H sing 7 n n 
C16 C15 42H sing 8 n n 
C23 C24 42H sing 9 n n 
C15 C14 42H sing 10 n n 
C24 C25 42H sing 11 n n 
C14 C13 42H sing 12 n n 
C12 C13 42H sing 13 n n 
C12 C11 42H sing 14 n n 
C11 C10 42H sing 15 n n 
C10 C9 42H sing 16 n n 
O6 C8 42H doub 17 n n 
C8 O5 42H sing 18 n n 
C8 C9 42H sing 19 n n 
O5 C7 42H sing 20 n n 
C C7 42H sing 21 n n 
C O 42H sing 22 n n 
C C1 42H sing 23 n n 
O4 P 42H doub 24 n n 
C1 O1 42H sing 25 n n 
O1 P 42H sing 26 n n 
P O3 42H sing 27 n n 
P O2 42H sing 28 n n 
O3 C2 42H sing 29 n n 
C2 C3 42H sing 30 n n 
C3 N 42H sing 31 n n 
C5 N 42H sing 32 n n 
C6 N 42H sing 33 n n 
N C4 42H sing 34 n n 
C7 H1 42H sing 35 n n 
C7 H2 42H sing 36 n n 
C H3 42H sing 37 n n 
C1 H4 42H sing 38 n n 
C1 H5 42H sing 39 n n 
C2 H6 42H sing 40 n n 
C2 H7 42H sing 41 n n 
C3 H8 42H sing 42 n n 
C3 H9 42H sing 43 n n 
C6 H10 42H sing 44 n n 
C6 H11 42H sing 45 n n 
C6 H12 42H sing 46 n n 
C5 H13 42H sing 47 n n 
C5 H14 42H sing 48 n n 
C5 H15 42H sing 49 n n 
C4 H16 42H sing 50 n n 
C4 H17 42H sing 51 n n 
C4 H18 42H sing 52 n n 
O2 H19 42H sing 53 n n 
O H20 42H sing 54 n n 
C9 H21 42H sing 55 n n 
C9 H22 42H sing 56 n n 
C10 H23 42H sing 57 n n 
C10 H24 42H sing 58 n n 
C11 H25 42H sing 59 n n 
C11 H26 42H sing 60 n n 
C12 H27 42H sing 61 n n 
C12 H28 42H sing 62 n n 
C13 H29 42H sing 63 n n 
C13 H30 42H sing 64 n n 
C14 H31 42H sing 65 n n 
C14 H32 42H sing 66 n n 
C15 H33 42H sing 67 n n 
C15 H34 42H sing 68 n n 
C16 H35 42H sing 69 n n 
C17 H36 42H sing 70 n n 
C18 H37 42H sing 71 n n 
C18 H38 42H sing 72 n n 
C19 H39 42H sing 73 n n 
C19 H40 42H sing 74 n n 
C20 H41 42H sing 75 n n 
C20 H42 42H sing 76 n n 
C21 H43 42H sing 77 n n 
C21 H44 42H sing 78 n n 
C22 H45 42H sing 79 n n 
C22 H46 42H sing 80 n n 
C23 H47 42H sing 81 n n 
C23 H48 42H sing 82 n n 
C24 H49 42H sing 83 n n 
C24 H50 42H sing 84 n n 
C25 H51 42H sing 85 n n 
C25 H52 42H sing 86 n n 
C25 H53 42H sing 87 n n 
#
_atom_sites.entry_id                     4X6C 
_atom_sites.fract_transf_matrix[1][1]    0.011202 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007035 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00569 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 NAG A 1 501 501 NAG NAG . 
J 5 NAG A 1 502 502 NAG NAG . 
K 6 42H A 1 503 2 42H LP0 . 
L 5 NAG C 1 301 502 NAG NAG . 
M 6 42H C 1 302 1 42H LP0 . 
N 7 HOH E 1 301 4 HOH HOH . 
N 7 HOH E 2 302 19 HOH HOH . 
N 7 HOH E 3 303 20 HOH HOH . 
O 7 HOH F 1 301 18 HOH HOH . 
O 7 HOH F 2 302 2 HOH HOH . 
O 7 HOH F 3 303 5 HOH HOH . 
O 7 HOH F 4 304 21 HOH HOH . 
O 7 HOH F 5 305 22 HOH HOH . 
O 7 HOH F 6 306 24 HOH HOH . 
O 7 HOH F 7 307 25 HOH HOH . 
P 7 HOH G 1 301 8 HOH HOH . 
P 7 HOH G 2 302 3 HOH HOH . 
P 7 HOH G 3 303 6 HOH HOH . 
P 7 HOH G 4 304 10 HOH HOH . 
Q 7 HOH H 1 301 1 HOH HOH . 
Q 7 HOH H 2 302 11 HOH HOH . 
Q 7 HOH H 3 303 12 HOH HOH . 
Q 7 HOH H 4 304 13 HOH HOH . 
Q 7 HOH H 5 305 14 HOH HOH . 
Q 7 HOH H 6 306 15 HOH HOH . 
Q 7 HOH H 7 307 16 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O6 42H . . . M 6 110.651 225.921 167.576 1 92.87 ? O6 42H 302 C 1 
HETATM 2 C C8 42H . . . M 6 109.472 225.81 167.347 1 101.81 ? C8 42H 302 C 1 
HETATM 3 O O5 42H . . . M 6 108.867 226.317 166.262 1 106.53 ? O5 42H 302 C 1 
HETATM 4 C C7 42H . . . M 6 109.682 226.892 165.215 1 109.07 ? C7 42H 302 C 1 
HETATM 5 C C 42H . . . M 6 108.742 227.016 164.033 1 114.22 ? C 42H 302 C 1 
HETATM 6 C C1 42H . . . M 6 107.756 225.87 163.903 1 129.74 ? C1 42H 302 C 1 
HETATM 7 O O1 42H . . . M 6 108.147 224.955 162.85 1 139.29 ? O1 42H 302 C 1 
HETATM 8 P P 42H . . . M 6 107.988 223.368 162.981 1 297 ? P 42H 302 C 1 
HETATM 9 O O4 42H . . . M 6 106.597 223.011 162.628 1 296.13 ? O4 42H 302 C 1 
HETATM 10 O O3 42H . . . M 6 108.938 222.877 161.795 1 126.68 ? O3 42H 302 C 1 
HETATM 11 C C2 42H . . . M 6 109.246 221.474 161.597 1 123.59 ? C2 42H 302 C 1 
HETATM 12 C C3 42H . . . M 6 110.287 221.436 160.494 1 123.86 ? C3 42H 302 C 1 
HETATM 13 N N 42H . . . M 6 109.799 221.759 159.07 1 123.29 ? N 42H 302 C 1 
HETATM 14 C C6 42H . . . M 6 110.618 220.966 158.096 1 122.08 ? C6 42H 302 C 1 
HETATM 15 C C5 42H . . . M 6 109.957 223.217 158.753 1 120.72 ? C5 42H 302 C 1 
HETATM 16 C C4 42H . . . M 6 108.357 221.379 158.908 1 123.73 ? C4 42H 302 C 1 
HETATM 17 O O2 42H . . . M 6 108.543 222.904 164.273 1 296.49 ? O2 42H 302 C 1 
HETATM 18 O O 42H . . . M 6 109.47 227.228 162.813 1 106.27 ? O 42H 302 C 1 
HETATM 19 C C9 42H . . . M 6 108.475 225.103 168.227 1 100.82 ? C9 42H 302 C 1 
HETATM 20 C C10 42H . . . M 6 108.698 223.598 168.388 1 90.84 ? C10 42H 302 C 1 
HETATM 21 C C11 42H . . . M 6 107.424 222.83 168.73 1 77 ? C11 42H 302 C 1 
HETATM 22 C C12 42H . . . M 6 106.647 223.335 169.939 1 66.65 ? C12 42H 302 C 1 
HETATM 23 C C13 42H . . . M 6 107.215 222.921 171.288 1 66.76 ? C13 42H 302 C 1 
HETATM 24 C C14 42H . . . M 6 106.347 223.313 172.477 1 68.73 ? C14 42H 302 C 1 
HETATM 25 C C15 42H . . . M 6 106.911 222.916 173.851 1 70.39 ? C15 42H 302 C 1 
HETATM 26 C C16 42H . . . M 6 105.88 222.986 174.952 1 70.15 ? C16 42H 302 C 1 
HETATM 27 C C17 42H . . . M 6 105.796 222.197 176.014 1 65.51 ? C17 42H 302 C 1 
HETATM 28 C C18 42H . . . M 6 106.725 221.066 176.364 1 59.71 ? C18 42H 302 C 1 
HETATM 29 C C19 42H . . . M 6 106.599 220.624 177.83 1 55.86 ? C19 42H 302 C 1 
HETATM 30 C C20 42H . . . M 6 107.753 219.791 178.379 1 56.44 ? C20 42H 302 C 1 
HETATM 31 C C21 42H . . . M 6 108.895 220.566 179.031 1 63.47 ? C21 42H 302 C 1 
HETATM 32 C C22 42H . . . M 6 109.857 221.268 178.078 1 61.97 ? C22 42H 302 C 1 
HETATM 33 C C23 42H . . . M 6 111.04 221.96 178.75 1 62.84 ? C23 42H 302 C 1 
HETATM 34 C C24 42H . . . M 6 112.045 222.57 177.757 1 65.86 ? C24 42H 302 C 1 
HETATM 35 C C25 42H . . . M 6 113.073 223.517 178.377 1 62.3 ? C25 42H 302 C 1 
#
_model_server_stats.io_time_ms              33 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           341 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           35 
#