data_4X6C
#
_model_server_result.job_id            vJO_Dzp_e31FBr8HM51y5g 
_model_server_result.datetime_utc      '2024-11-20 01:14:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4x6c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":502}' 
#
_entry.id    4X6C 
#
_exptl.entry_id    4X6C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4X6C 
_cell.length_a            89.273 
_cell.length_b            142.144 
_cell.length_c            175.752 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4X6C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
? tetrameric 4 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,H,I,J,K,P,Q 1 1 
C,D,E,F,L,M,N,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 J N N 
? 5 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 99 A CYS 102 1_555 A SG CYS 163 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf2 A SG CYS 203 A CYS 206 1_555 A SG CYS 258 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf4 C SG CYS 99 C CYS 102 1_555 C SG CYS 163 C CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf5 C SG CYS 203 C CYS 206 1_555 C SG CYS 258 C CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf6 D SG CYS 25 D CYS 25 1_555 D SG CYS 80 D CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 E SG CYS 23 E CYS 22 1_555 E SG CYS 89 E CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf8 E SG CYS 136 E CYS 135 1_555 E SG CYS 186 E CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf9 E SG CYS 161 E CYS 160 1_555 F SG CYS 172 F CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf10 F SG CYS 23 F CYS 23 1_555 F SG CYS 91 F CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
disulf ? disulf11 F SG CYS 146 F CYS 146 1_555 F SG CYS 211 F CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf12 G SG CYS 23 G CYS 22 1_555 G SG CYS 89 G CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf13 G SG CYS 161 G CYS 160 1_555 H SG CYS 172 H CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf14 H SG CYS 23 H CYS 23 1_555 H SG CYS 91 H CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
disulf ? disulf15 H SG CYS 146 H CYS 146 1_555 H SG CYS 211 H CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
covale ? covale1 A ND2 ASN 54 A ASN 57 1_555 J C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
covale ? covale2 A ND2 ASN 125 A ASN 128 1_555 I C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale3 C ND2 ASN 54 C ASN 57 1_555 L C1 NAG . C NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 324 n n 
C1 O1 NAG sing 325 n n 
C1 O5 NAG sing 326 n n 
C1 H1 NAG sing 327 n n 
C2 C3 NAG sing 328 n n 
C2 N2 NAG sing 329 n n 
C2 H2 NAG sing 330 n n 
C3 C4 NAG sing 331 n n 
C3 O3 NAG sing 332 n n 
C3 H3 NAG sing 333 n n 
C4 C5 NAG sing 334 n n 
C4 O4 NAG sing 335 n n 
C4 H4 NAG sing 336 n n 
C5 C6 NAG sing 337 n n 
C5 O5 NAG sing 338 n n 
C5 H5 NAG sing 339 n n 
C6 O6 NAG sing 340 n n 
C6 H61 NAG sing 341 n n 
C6 H62 NAG sing 342 n n 
C7 C8 NAG sing 343 n n 
C7 N2 NAG sing 344 n n 
C7 O7 NAG doub 345 n n 
C8 H81 NAG sing 346 n n 
C8 H82 NAG sing 347 n n 
C8 H83 NAG sing 348 n n 
N2 HN2 NAG sing 349 n n 
O1 HO1 NAG sing 350 n n 
O3 HO3 NAG sing 351 n n 
O4 HO4 NAG sing 352 n n 
O6 HO6 NAG sing 353 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4X6C 
_atom_sites.fract_transf_matrix[1][1]    0.011202 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007035 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00569 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 NAG A 1 501 501 NAG NAG . 
J 5 NAG A 1 502 502 NAG NAG . 
K 6 42H A 1 503 2 42H LP0 . 
L 5 NAG C 1 301 502 NAG NAG . 
M 6 42H C 1 302 1 42H LP0 . 
N 7 HOH E 1 301 4 HOH HOH . 
N 7 HOH E 2 302 19 HOH HOH . 
N 7 HOH E 3 303 20 HOH HOH . 
O 7 HOH F 1 301 18 HOH HOH . 
O 7 HOH F 2 302 2 HOH HOH . 
O 7 HOH F 3 303 5 HOH HOH . 
O 7 HOH F 4 304 21 HOH HOH . 
O 7 HOH F 5 305 22 HOH HOH . 
O 7 HOH F 6 306 24 HOH HOH . 
O 7 HOH F 7 307 25 HOH HOH . 
P 7 HOH G 1 301 8 HOH HOH . 
P 7 HOH G 2 302 3 HOH HOH . 
P 7 HOH G 3 303 6 HOH HOH . 
P 7 HOH G 4 304 10 HOH HOH . 
Q 7 HOH H 1 301 1 HOH HOH . 
Q 7 HOH H 2 302 11 HOH HOH . 
Q 7 HOH H 3 303 12 HOH HOH . 
Q 7 HOH H 4 304 13 HOH HOH . 
Q 7 HOH H 5 305 14 HOH HOH . 
Q 7 HOH H 6 306 15 HOH HOH . 
Q 7 HOH H 7 307 16 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . J 5 109.183 189.886 192.811 1 93.53 ? C1 NAG 502 A 1 
HETATM 2 C C2 NAG . . . J 5 108.628 189.189 191.553 1 108.9 ? C2 NAG 502 A 1 
HETATM 3 C C3 NAG . . . J 5 109.691 188.244 190.926 1 101.6 ? C3 NAG 502 A 1 
HETATM 4 C C4 NAG . . . J 5 111.137 188.727 191.079 1 104.7 ? C4 NAG 502 A 1 
HETATM 5 C C5 NAG . . . J 5 111.376 189.472 192.389 1 98.31 ? C5 NAG 502 A 1 
HETATM 6 C C6 NAG . . . J 5 112.726 190.141 192.474 1 91.78 ? C6 NAG 502 A 1 
HETATM 7 C C7 NAG . . . J 5 106.369 188.239 191.133 1 123.2 ? C7 NAG 502 A 1 
HETATM 8 C C8 NAG . . . J 5 106.404 188.897 189.784 1 125.76 ? C8 NAG 502 A 1 
HETATM 9 N N2 NAG . . . J 5 107.44 188.425 191.916 1 119.3 ? N2 NAG 502 A 1 
HETATM 10 O O3 NAG . . . J 5 109.419 188.071 189.54 1 95.5 ? O3 NAG 502 A 1 
HETATM 11 O O4 NAG . . . J 5 112.013 187.604 191.027 1 103.37 ? O4 NAG 502 A 1 
HETATM 12 O O5 NAG . . . J 5 110.391 190.498 192.513 1 96.16 ? O5 NAG 502 A 1 
HETATM 13 O O6 NAG . . . J 5 112.629 191.385 193.152 1 86.94 ? O6 NAG 502 A 1 
HETATM 14 O O7 NAG . . . J 5 105.404 187.57 191.507 1 120.8 ? O7 NAG 502 A 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           14 
#