data_4X6C # _model_server_result.job_id FpJP2alAzH3uMZgww9xNmw _model_server_result.datetime_utc '2024-11-20 01:14:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x6c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":503}' # _entry.id 4X6C # _exptl.entry_id 4X6C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.675 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(4R,7R,18Z)-4,7-dihydroxy-N,N,N-trimethyl-10-oxo-3,5,9-trioxa-4-phosphaheptacos-18-en-1-aminium 4-oxide' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4X6C _cell.length_a 89.273 _cell.length_b 142.144 _cell.length_c 175.752 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X6C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,K,P,Q 1 1 C,D,E,F,L,M,N,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 K N N ? 6 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 99 A CYS 102 1_555 A SG CYS 163 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf2 A SG CYS 203 A CYS 206 1_555 A SG CYS 258 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 C SG CYS 99 C CYS 102 1_555 C SG CYS 163 C CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf5 C SG CYS 203 C CYS 206 1_555 C SG CYS 258 C CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 D SG CYS 25 D CYS 25 1_555 D SG CYS 80 D CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 E SG CYS 23 E CYS 22 1_555 E SG CYS 89 E CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf8 E SG CYS 136 E CYS 135 1_555 E SG CYS 186 E CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf9 E SG CYS 161 E CYS 160 1_555 F SG CYS 172 F CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf10 F SG CYS 23 F CYS 23 1_555 F SG CYS 91 F CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? disulf ? disulf11 F SG CYS 146 F CYS 146 1_555 F SG CYS 211 F CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf12 G SG CYS 23 G CYS 22 1_555 G SG CYS 89 G CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf13 G SG CYS 161 G CYS 160 1_555 H SG CYS 172 H CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf14 H SG CYS 23 H CYS 23 1_555 H SG CYS 91 H CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? disulf ? disulf15 H SG CYS 146 H CYS 146 1_555 H SG CYS 211 H CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 A ND2 ASN 54 A ASN 57 1_555 J C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale2 A ND2 ASN 125 A ASN 128 1_555 I C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale3 C ND2 ASN 54 C ASN 57 1_555 L C1 NAG . C NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? # _chem_comp.formula 'C26 H53 N O7 P 1' _chem_comp.formula_weight 522.675 _chem_comp.id 42H _chem_comp.mon_nstd_flag . _chem_comp.name '(4R,7R,18Z)-4,7-dihydroxy-N,N,N-trimethyl-10-oxo-3,5,9-trioxa-4-phosphaheptacos-18-en-1-aminium 4-oxide' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C18 42H sing 1 n n C19 C20 42H sing 2 n n C18 C17 42H sing 3 n n C17 C16 42H doub 4 z n C20 C21 42H sing 5 n n C21 C22 42H sing 6 n n C22 C23 42H sing 7 n n C16 C15 42H sing 8 n n C23 C24 42H sing 9 n n C15 C14 42H sing 10 n n C24 C25 42H sing 11 n n C14 C13 42H sing 12 n n C12 C13 42H sing 13 n n C12 C11 42H sing 14 n n C11 C10 42H sing 15 n n C10 C9 42H sing 16 n n O6 C8 42H doub 17 n n C8 O5 42H sing 18 n n C8 C9 42H sing 19 n n O5 C7 42H sing 20 n n C C7 42H sing 21 n n C O 42H sing 22 n n C C1 42H sing 23 n n O4 P 42H doub 24 n n C1 O1 42H sing 25 n n O1 P 42H sing 26 n n P O3 42H sing 27 n n P O2 42H sing 28 n n O3 C2 42H sing 29 n n C2 C3 42H sing 30 n n C3 N 42H sing 31 n n C5 N 42H sing 32 n n C6 N 42H sing 33 n n N C4 42H sing 34 n n C7 H1 42H sing 35 n n C7 H2 42H sing 36 n n C H3 42H sing 37 n n C1 H4 42H sing 38 n n C1 H5 42H sing 39 n n C2 H6 42H sing 40 n n C2 H7 42H sing 41 n n C3 H8 42H sing 42 n n C3 H9 42H sing 43 n n C6 H10 42H sing 44 n n C6 H11 42H sing 45 n n C6 H12 42H sing 46 n n C5 H13 42H sing 47 n n C5 H14 42H sing 48 n n C5 H15 42H sing 49 n n C4 H16 42H sing 50 n n C4 H17 42H sing 51 n n C4 H18 42H sing 52 n n O2 H19 42H sing 53 n n O H20 42H sing 54 n n C9 H21 42H sing 55 n n C9 H22 42H sing 56 n n C10 H23 42H sing 57 n n C10 H24 42H sing 58 n n C11 H25 42H sing 59 n n C11 H26 42H sing 60 n n C12 H27 42H sing 61 n n C12 H28 42H sing 62 n n C13 H29 42H sing 63 n n C13 H30 42H sing 64 n n C14 H31 42H sing 65 n n C14 H32 42H sing 66 n n C15 H33 42H sing 67 n n C15 H34 42H sing 68 n n C16 H35 42H sing 69 n n C17 H36 42H sing 70 n n C18 H37 42H sing 71 n n C18 H38 42H sing 72 n n C19 H39 42H sing 73 n n C19 H40 42H sing 74 n n C20 H41 42H sing 75 n n C20 H42 42H sing 76 n n C21 H43 42H sing 77 n n C21 H44 42H sing 78 n n C22 H45 42H sing 79 n n C22 H46 42H sing 80 n n C23 H47 42H sing 81 n n C23 H48 42H sing 82 n n C24 H49 42H sing 83 n n C24 H50 42H sing 84 n n C25 H51 42H sing 85 n n C25 H52 42H sing 86 n n C25 H53 42H sing 87 n n # _atom_sites.entry_id 4X6C _atom_sites.fract_transf_matrix[1][1] 0.011202 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007035 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00569 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 NAG A 1 501 501 NAG NAG . J 5 NAG A 1 502 502 NAG NAG . K 6 42H A 1 503 2 42H LP0 . L 5 NAG C 1 301 502 NAG NAG . M 6 42H C 1 302 1 42H LP0 . N 7 HOH E 1 301 4 HOH HOH . N 7 HOH E 2 302 19 HOH HOH . N 7 HOH E 3 303 20 HOH HOH . O 7 HOH F 1 301 18 HOH HOH . O 7 HOH F 2 302 2 HOH HOH . O 7 HOH F 3 303 5 HOH HOH . O 7 HOH F 4 304 21 HOH HOH . O 7 HOH F 5 305 22 HOH HOH . O 7 HOH F 6 306 24 HOH HOH . O 7 HOH F 7 307 25 HOH HOH . P 7 HOH G 1 301 8 HOH HOH . P 7 HOH G 2 302 3 HOH HOH . P 7 HOH G 3 303 6 HOH HOH . P 7 HOH G 4 304 10 HOH HOH . Q 7 HOH H 1 301 1 HOH HOH . Q 7 HOH H 2 302 11 HOH HOH . Q 7 HOH H 3 303 12 HOH HOH . Q 7 HOH H 4 304 13 HOH HOH . Q 7 HOH H 5 305 14 HOH HOH . Q 7 HOH H 6 306 15 HOH HOH . Q 7 HOH H 7 307 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O6 42H . . . K 6 103.043 179.75 211.912 1 106.47 ? O6 42H 503 A 1 HETATM 2 C C8 42H . . . K 6 104.142 179.364 212.167 1 109.01 ? C8 42H 503 A 1 HETATM 3 O O5 42H . . . K 6 104.463 178.078 212.306 1 121.24 ? O5 42H 503 A 1 HETATM 4 C C7 42H . . . K 6 104.634 177.573 213.649 1 131.12 ? C7 42H 503 A 1 HETATM 5 C C 42H . . . K 6 104.54 176.067 213.572 1 137.19 ? C 42H 503 A 1 HETATM 6 C C1 42H . . . K 6 103.335 175.466 214.254 1 142.66 ? C1 42H 503 A 1 HETATM 7 O O1 42H . . . K 6 103.601 174.073 214.514 1 146.9 ? O1 42H 503 A 1 HETATM 8 P P 42H . . . K 6 102.432 173.134 215.042 1 206.47 ? P 42H 503 A 1 HETATM 9 O O4 42H . . . K 6 101.648 172.721 213.861 1 205.64 ? O4 42H 503 A 1 HETATM 10 O O3 42H . . . K 6 103.086 171.823 215.652 1 159.01 ? O3 42H 503 A 1 HETATM 11 C C2 42H . . . K 6 102.239 170.796 216.218 1 159.01 ? C2 42H 503 A 1 HETATM 12 C C3 42H . . . K 6 102.535 170.786 217.701 1 158.78 ? C3 42H 503 A 1 HETATM 13 N N 42H . . . K 6 101.43 171.288 218.608 1 157.42 ? N 42H 503 A 1 HETATM 14 C C6 42H . . . K 6 101.413 172.785 218.596 1 154.82 ? C6 42H 503 A 1 HETATM 15 C C5 42H . . . K 6 100.112 170.776 218.121 1 156.77 ? C5 42H 503 A 1 HETATM 16 C C4 42H . . . K 6 101.633 170.823 220.014 1 156.72 ? C4 42H 503 A 1 HETATM 17 O O2 42H . . . K 6 101.756 173.859 216.137 1 205.61 ? O2 42H 503 A 1 HETATM 18 O O 42H . . . K 6 105.714 175.487 214.141 1 135.91 ? O 42H 503 A 1 HETATM 19 C C9 42H . . . K 6 105.328 180.252 212.361 1 97.44 ? C9 42H 503 A 1 HETATM 20 C C10 42H . . . K 6 105.147 181.623 211.737 1 84.46 ? C10 42H 503 A 1 HETATM 21 C C11 42H . . . K 6 106.451 182.239 211.279 1 72.18 ? C11 42H 503 A 1 HETATM 22 C C12 42H . . . K 6 106.337 183.103 210.045 1 61.73 ? C12 42H 503 A 1 HETATM 23 C C13 42H . . . K 6 106.13 184.566 210.342 1 56.3 ? C13 42H 503 A 1 HETATM 24 C C14 42H . . . K 6 106.835 185.457 209.355 1 59.62 ? C14 42H 503 A 1 HETATM 25 C C15 42H . . . K 6 105.991 185.952 208.217 1 62.72 ? C15 42H 503 A 1 HETATM 26 C C16 42H . . . K 6 106.184 185.189 206.975 1 68.86 ? C16 42H 503 A 1 HETATM 27 C C17 42H . . . K 6 105.991 185.595 205.739 1 71.79 ? C17 42H 503 A 1 HETATM 28 C C18 42H . . . K 6 105.551 186.935 205.276 1 72.41 ? C18 42H 503 A 1 HETATM 29 C C19 42H . . . K 6 104.088 187.048 204.9 1 64.11 ? C19 42H 503 A 1 HETATM 30 C C20 42H . . . K 6 103.185 187.135 206.101 1 53.67 ? C20 42H 503 A 1 HETATM 31 C C21 42H . . . K 6 102.558 188.488 206.32 1 56.83 ? C21 42H 503 A 1 HETATM 32 C C22 42H . . . K 6 101.111 188.395 206.751 1 54 ? C22 42H 503 A 1 HETATM 33 C C23 42H . . . K 6 100.801 189.041 208.073 1 46.58 ? C23 42H 503 A 1 HETATM 34 C C24 42H . . . K 6 99.814 188.288 208.871 1 47.62 ? C24 42H 503 A 1 HETATM 35 C C25 42H . . . K 6 98.898 189.146 209.62 1 52.38 ? C25 42H 503 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 35 #