data_4X6D # _model_server_result.job_id ySecqW0eFUaiv9dQllIKqw _model_server_result.datetime_utc '2024-11-04 23:19:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x6d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":304}' # _entry.id 4X6D # _exptl.entry_id 4X6D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.461 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OLEIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4X6D _cell.length_a 90.133 _cell.length_b 126.322 _cell.length_c 226.852 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X6D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,K,M 1 1 C,D,E,F,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 5 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n I NAG 1 I 1 NAG A 301 NAG 5 n I NAG 2 I 2 NAG A 303 NAG 5 n I FUC 3 I 3 FUC A 302 FUC 5 n J NAG 1 J 1 NAG C 302 NAG 5 n J NAG 2 J 2 NAG C 303 NAG 5 n J FUC 3 J 3 FUC C 301 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 99 A CYS 102 1_555 A SG CYS 163 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 A SG CYS 203 A CYS 206 1_555 A SG CYS 258 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 C SG CYS 99 C CYS 102 1_555 C SG CYS 163 C CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf5 D SG CYS 25 D CYS 25 1_555 D SG CYS 80 D CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf6 E SG CYS 23 E CYS 22 1_555 E SG CYS 89 E CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 E SG CYS 136 E CYS 135 1_555 E SG CYS 186 E CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 E SG CYS 161 E CYS 160 1_555 F SG CYS 172 F CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf9 F SG CYS 23 F CYS 23 1_555 F SG CYS 91 F CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? disulf ? disulf10 F SG CYS 146 F CYS 146 1_555 F SG CYS 211 F CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf11 G SG CYS 23 G CYS 22 1_555 G SG CYS 89 G CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 G SG CYS 136 G CYS 135 1_555 G SG CYS 186 G CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf13 G SG CYS 161 G CYS 160 1_555 H SG CYS 172 H CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf14 H SG CYS 23 H CYS 23 1_555 H SG CYS 91 H CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf15 H SG CYS 146 H CYS 146 1_555 H SG CYS 211 H CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? covale ? covale1 A ND2 ASN 54 A ASN 57 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale2 C ND2 ASN 54 C ASN 57 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale3 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale4 I O6 NAG . I NAG 1 1_555 I C1 FUC . I FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale5 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale6 J O6 NAG . J NAG 1 1_555 J C1 FUC . J FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? # _chem_comp.formula 'C18 H34 O2' _chem_comp.formula_weight 282.461 _chem_comp.id OLA _chem_comp.mon_nstd_flag . _chem_comp.name 'OLEIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 OLA doub 290 n n C1 O2 OLA sing 291 n n C1 C2 OLA sing 292 n n O2 HO2 OLA sing 293 n n C2 C3 OLA sing 294 n n C2 H21 OLA sing 295 n n C2 H22 OLA sing 296 n n C3 C4 OLA sing 297 n n C3 H31 OLA sing 298 n n C3 H32 OLA sing 299 n n C4 C5 OLA sing 300 n n C4 H41 OLA sing 301 n n C4 H42 OLA sing 302 n n C5 C6 OLA sing 303 n n C5 H51 OLA sing 304 n n C5 H52 OLA sing 305 n n C6 C7 OLA sing 306 n n C6 H61 OLA sing 307 n n C6 H62 OLA sing 308 n n C7 C8 OLA sing 309 n n C7 H71 OLA sing 310 n n C7 H72 OLA sing 311 n n C8 C9 OLA sing 312 n n C8 H81 OLA sing 313 n n C8 H82 OLA sing 314 n n C9 C10 OLA doub 315 z n C9 H9 OLA sing 316 n n C10 C11 OLA sing 317 n n C10 H10 OLA sing 318 n n C11 C12 OLA sing 319 n n C11 H111 OLA sing 320 n n C11 H112 OLA sing 321 n n C12 C13 OLA sing 322 n n C12 H121 OLA sing 323 n n C12 H122 OLA sing 324 n n C13 C14 OLA sing 325 n n C13 H131 OLA sing 326 n n C13 H132 OLA sing 327 n n C14 C15 OLA sing 328 n n C14 H141 OLA sing 329 n n C14 H142 OLA sing 330 n n C15 C16 OLA sing 331 n n C15 H151 OLA sing 332 n n C15 H152 OLA sing 333 n n C16 C17 OLA sing 334 n n C16 H161 OLA sing 335 n n C16 H162 OLA sing 336 n n C17 C18 OLA sing 337 n n C17 H171 OLA sing 338 n n C17 H172 OLA sing 339 n n C18 H181 OLA sing 340 n n C18 H182 OLA sing 341 n n C18 H183 OLA sing 342 n n # _atom_sites.entry_id 4X6D _atom_sites.fract_transf_matrix[1][1] 0.011095 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007916 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004408 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 6 OLA A 1 304 304 OLA OLA . L 7 PAM C 1 304 304 PAM PAM . M 8 HOH H 1 301 301 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OLA . . . K 6 -17.527 -35.163 48.297 1 134.84 ? C1 OLA 304 A 1 HETATM 2 O O1 OLA . . . K 6 -18.262 -34.227 48.704 1 133.08 ? O1 OLA 304 A 1 HETATM 3 O O2 OLA . . . K 6 -16.689 -35.679 49.081 1 133.66 ? O2 OLA 304 A 1 HETATM 4 C C2 OLA . . . K 6 -17.647 -35.658 46.869 1 129.4 ? C2 OLA 304 A 1 HETATM 5 C C3 OLA . . . K 6 -18.985 -36.368 46.683 1 116.76 ? C3 OLA 304 A 1 HETATM 6 C C4 OLA . . . K 6 -18.815 -37.66 45.9 1 104.56 ? C4 OLA 304 A 1 HETATM 7 C C5 OLA . . . K 6 -20.092 -38.488 45.93 1 93.52 ? C5 OLA 304 A 1 HETATM 8 C C6 OLA . . . K 6 -19.756 -39.968 46.086 1 84.83 ? C6 OLA 304 A 1 HETATM 9 C C7 OLA . . . K 6 -20.687 -40.831 45.254 1 78.06 ? C7 OLA 304 A 1 HETATM 10 C C8 OLA . . . K 6 -19.96 -41.494 44.096 1 75.15 ? C8 OLA 304 A 1 HETATM 11 C C9 OLA . . . K 6 -20.805 -42.655 43.633 1 79.21 ? C9 OLA 304 A 1 HETATM 12 C C10 OLA . . . K 6 -20.275 -43.593 42.634 1 86.22 ? C10 OLA 304 A 1 HETATM 13 C C11 OLA . . . K 6 -19.805 -43.089 41.288 1 86.79 ? C11 OLA 304 A 1 HETATM 14 C C12 OLA . . . K 6 -18.321 -43.402 41.095 1 87.59 ? C12 OLA 304 A 1 HETATM 15 C C13 OLA . . . K 6 -18.007 -44.894 41.17 1 85.09 ? C13 OLA 304 A 1 HETATM 16 C C14 OLA . . . K 6 -16.521 -45.144 41.44 1 93.47 ? C14 OLA 304 A 1 HETATM 17 C C15 OLA . . . K 6 -16.056 -44.798 42.86 1 90.55 ? C15 OLA 304 A 1 HETATM 18 C C16 OLA . . . K 6 -14.576 -44.396 42.902 1 88.47 ? C16 OLA 304 A 1 HETATM 19 C C17 OLA . . . K 6 -13.778 -45.192 43.938 1 89.62 ? C17 OLA 304 A 1 HETATM 20 C C18 OLA . . . K 6 -12.595 -44.413 44.525 1 84.44 ? C18 OLA 304 A 1 # _model_server_stats.io_time_ms 126 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #