data_4X6D # _model_server_result.job_id eNGsPgZT2YPONuCmhcZjqw _model_server_result.datetime_utc '2024-12-20 12:09:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x6d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":304}' # _entry.id 4X6D # _exptl.entry_id 4X6D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 254.408 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITOLEIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4X6D _cell.length_a 90.133 _cell.length_b 126.322 _cell.length_c 226.852 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X6D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,K,M 1 1 C,D,E,F,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 5 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n I NAG 1 I 1 NAG A 301 NAG 5 n I NAG 2 I 2 NAG A 303 NAG 5 n I FUC 3 I 3 FUC A 302 FUC 5 n J NAG 1 J 1 NAG C 302 NAG 5 n J NAG 2 J 2 NAG C 303 NAG 5 n J FUC 3 J 3 FUC C 301 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 99 A CYS 102 1_555 A SG CYS 163 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 A SG CYS 203 A CYS 206 1_555 A SG CYS 258 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 C SG CYS 99 C CYS 102 1_555 C SG CYS 163 C CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf5 D SG CYS 25 D CYS 25 1_555 D SG CYS 80 D CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf6 E SG CYS 23 E CYS 22 1_555 E SG CYS 89 E CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 E SG CYS 136 E CYS 135 1_555 E SG CYS 186 E CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 E SG CYS 161 E CYS 160 1_555 F SG CYS 172 F CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf9 F SG CYS 23 F CYS 23 1_555 F SG CYS 91 F CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? disulf ? disulf10 F SG CYS 146 F CYS 146 1_555 F SG CYS 211 F CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf11 G SG CYS 23 G CYS 22 1_555 G SG CYS 89 G CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 G SG CYS 136 G CYS 135 1_555 G SG CYS 186 G CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf13 G SG CYS 161 G CYS 160 1_555 H SG CYS 172 H CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf14 H SG CYS 23 H CYS 23 1_555 H SG CYS 91 H CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf15 H SG CYS 146 H CYS 146 1_555 H SG CYS 211 H CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? covale ? covale1 A ND2 ASN 54 A ASN 57 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale2 C ND2 ASN 54 C ASN 57 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale3 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale4 I O6 NAG . I NAG 1 1_555 I C1 FUC . I FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale5 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale6 J O6 NAG . J NAG 1 1_555 J C1 FUC . J FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? # _chem_comp.formula 'C16 H30 O2' _chem_comp.formula_weight 254.408 _chem_comp.id PAM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITOLEIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PAM sing 343 n n C1 O2 PAM doub 344 n n C1 C2 PAM sing 345 n n O1 HO1 PAM sing 346 n n C2 C3 PAM sing 347 n n C2 H21 PAM sing 348 n n C2 H22 PAM sing 349 n n C3 C4 PAM sing 350 n n C3 H31 PAM sing 351 n n C3 H32 PAM sing 352 n n C4 C5 PAM sing 353 n n C4 H41 PAM sing 354 n n C4 H42 PAM sing 355 n n C5 C6 PAM sing 356 n n C5 H51 PAM sing 357 n n C5 H52 PAM sing 358 n n C6 C7 PAM sing 359 n n C6 H61 PAM sing 360 n n C6 H62 PAM sing 361 n n C7 C8 PAM sing 362 n n C7 H71 PAM sing 363 n n C7 H72 PAM sing 364 n n C8 C9 PAM sing 365 n n C8 H81 PAM sing 366 n n C8 H82 PAM sing 367 n n C9 C10 PAM doub 368 z n C9 H9 PAM sing 369 n n C10 C11 PAM sing 370 n n C10 H10 PAM sing 371 n n C11 C12 PAM sing 372 n n C11 H111 PAM sing 373 n n C11 H112 PAM sing 374 n n C12 C13 PAM sing 375 n n C12 H121 PAM sing 376 n n C12 H122 PAM sing 377 n n C13 C14 PAM sing 378 n n C13 H131 PAM sing 379 n n C13 H132 PAM sing 380 n n C14 C15 PAM sing 381 n n C14 H141 PAM sing 382 n n C14 H142 PAM sing 383 n n C15 C16 PAM sing 384 n n C15 H151 PAM sing 385 n n C15 H152 PAM sing 386 n n C16 H161 PAM sing 387 n n C16 H162 PAM sing 388 n n C16 H163 PAM sing 389 n n # _atom_sites.entry_id 4X6D _atom_sites.fract_transf_matrix[1][1] 0.011095 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007916 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004408 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 6 OLA A 1 304 304 OLA OLA . L 7 PAM C 1 304 304 PAM PAM . M 8 HOH H 1 301 301 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PAM . . . L 7 -22.095 -69.453 -10.512 1 156.41 ? C1 PAM 304 C 1 HETATM 2 O O1 PAM . . . L 7 -20.984 -69.021 -10.875 1 163.46 ? O1 PAM 304 C 1 HETATM 3 O O2 PAM . . . L 7 -23.07 -69.328 -11.283 1 159.63 ? O2 PAM 304 C 1 HETATM 4 C C2 PAM . . . L 7 -22.246 -70.107 -9.16 1 145.48 ? C2 PAM 304 C 1 HETATM 5 C C3 PAM . . . L 7 -21.746 -69.153 -8.087 1 132.49 ? C3 PAM 304 C 1 HETATM 6 C C4 PAM . . . L 7 -20.99 -69.885 -6.992 1 119.81 ? C4 PAM 304 C 1 HETATM 7 C C5 PAM . . . L 7 -20.415 -68.865 -6.023 1 107.15 ? C5 PAM 304 C 1 HETATM 8 C C6 PAM . . . L 7 -21.499 -68.364 -5.085 1 95.95 ? C6 PAM 304 C 1 HETATM 9 C C7 PAM . . . L 7 -20.955 -67.432 -4.011 1 86.77 ? C7 PAM 304 C 1 HETATM 10 C C8 PAM . . . L 7 -21.992 -66.339 -3.796 1 82.68 ? C8 PAM 304 C 1 HETATM 11 C C9 PAM . . . L 7 -21.88 -65.724 -2.422 1 83.09 ? C9 PAM 304 C 1 HETATM 12 C C10 PAM . . . L 7 -23.08 -65.604 -1.578 1 78.58 ? C10 PAM 304 C 1 HETATM 13 C C11 PAM . . . L 7 -24.43 -65.893 -2.183 1 82.26 ? C11 PAM 304 C 1 HETATM 14 C C12 PAM . . . L 7 -25.268 -66.756 -1.244 1 85.99 ? C12 PAM 304 C 1 HETATM 15 C C13 PAM . . . L 7 -26.238 -67.623 -2.047 1 87.69 ? C13 PAM 304 C 1 HETATM 16 C C14 PAM . . . L 7 -27.142 -68.452 -1.135 1 90.76 ? C14 PAM 304 C 1 HETATM 17 C C15 PAM . . . L 7 -28.485 -68.768 -1.798 1 90.09 ? C15 PAM 304 C 1 HETATM 18 C C16 PAM . . . L 7 -28.372 -69.821 -2.897 1 86.14 ? C16 PAM 304 C 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 41 _model_server_stats.create_model_time_ms 50 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 18 #