data_4X6E
#
_model_server_result.job_id            ippv9k1E3nMPwuGaTimz-Q 
_model_server_result.datetime_utc      '2025-07-17 22:20:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4x6e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    4X6E 
#
_exptl.entry_id    4X6E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              134.087 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            D-MALATE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4X6E 
_cell.length_a            42.299 
_cell.length_b            90.663 
_cell.length_c            108.066 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4X6E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 99 A CYS 102 1_555 A SG CYS 163 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf2 A SG CYS 203 A CYS 206 1_555 A SG CYS 258 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
#
_chem_comp.formula           'C4 H6 O5' 
_chem_comp.formula_weight    134.087 
_chem_comp.id                MLT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              D-MALATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(2R)-2-HYDROXYBUTANEDIOIC ACID;2-HYDROXY-SUCCINIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 MLT doub 324 n n 
C1 O2 MLT sing 325 n n 
C1 C2 MLT sing 326 n n 
C2 O3 MLT sing 327 n n 
C2 C3 MLT sing 328 n n 
C2 H2 MLT sing 329 n n 
O3 HO3 MLT sing 330 n n 
C3 C4 MLT sing 331 n n 
C3 H31 MLT sing 332 n n 
C3 H32 MLT sing 333 n n 
C4 O4 MLT doub 334 n n 
C4 O5 MLT sing 335 n n 
O5 HO5 MLT sing 336 n n 
O2 H6 MLT sing 337 n n 
#
_atom_sites.entry_id                     4X6E 
_atom_sites.fract_transf_matrix[1][1]    0.023641 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01103 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009254 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MLT A 1 301 1 MLT MLT . 
D 4 42H A 1 302 901 42H LPC . 
E 5 HOH A 1 401 96 HOH HOH . 
E 5 HOH A 2 402 115 HOH HOH . 
E 5 HOH A 3 403 178 HOH HOH . 
E 5 HOH A 4 404 10 HOH HOH . 
E 5 HOH A 5 405 87 HOH HOH . 
E 5 HOH A 6 406 13 HOH HOH . 
E 5 HOH A 7 407 4 HOH HOH . 
E 5 HOH A 8 408 116 HOH HOH . 
E 5 HOH A 9 409 136 HOH HOH . 
E 5 HOH A 10 410 52 HOH HOH . 
E 5 HOH A 11 411 92 HOH HOH . 
E 5 HOH A 12 412 82 HOH HOH . 
E 5 HOH A 13 413 43 HOH HOH . 
E 5 HOH A 14 414 14 HOH HOH . 
E 5 HOH A 15 415 111 HOH HOH . 
E 5 HOH A 16 416 21 HOH HOH . 
E 5 HOH A 17 417 53 HOH HOH . 
E 5 HOH A 18 418 157 HOH HOH . 
E 5 HOH A 19 419 37 HOH HOH . 
E 5 HOH A 20 420 158 HOH HOH . 
E 5 HOH A 21 421 26 HOH HOH . 
E 5 HOH A 22 422 15 HOH HOH . 
E 5 HOH A 23 423 112 HOH HOH . 
E 5 HOH A 24 424 74 HOH HOH . 
E 5 HOH A 25 425 138 HOH HOH . 
E 5 HOH A 26 426 105 HOH HOH . 
E 5 HOH A 27 427 61 HOH HOH . 
E 5 HOH A 28 428 127 HOH HOH . 
E 5 HOH A 29 429 141 HOH HOH . 
E 5 HOH A 30 430 131 HOH HOH . 
E 5 HOH A 31 431 66 HOH HOH . 
E 5 HOH A 32 432 124 HOH HOH . 
E 5 HOH A 33 433 2 HOH HOH . 
E 5 HOH A 34 434 3 HOH HOH . 
E 5 HOH A 35 435 6 HOH HOH . 
E 5 HOH A 36 436 7 HOH HOH . 
E 5 HOH A 37 437 12 HOH HOH . 
E 5 HOH A 38 438 16 HOH HOH . 
E 5 HOH A 39 439 20 HOH HOH . 
E 5 HOH A 40 440 22 HOH HOH . 
E 5 HOH A 41 441 23 HOH HOH . 
E 5 HOH A 42 442 25 HOH HOH . 
E 5 HOH A 43 443 28 HOH HOH . 
E 5 HOH A 44 444 29 HOH HOH . 
E 5 HOH A 45 445 35 HOH HOH . 
E 5 HOH A 46 446 39 HOH HOH . 
E 5 HOH A 47 447 40 HOH HOH . 
E 5 HOH A 48 448 44 HOH HOH . 
E 5 HOH A 49 449 48 HOH HOH . 
E 5 HOH A 50 450 50 HOH HOH . 
E 5 HOH A 51 451 54 HOH HOH . 
E 5 HOH A 52 452 56 HOH HOH . 
E 5 HOH A 53 453 65 HOH HOH . 
E 5 HOH A 54 454 70 HOH HOH . 
E 5 HOH A 55 455 72 HOH HOH . 
E 5 HOH A 56 456 73 HOH HOH . 
E 5 HOH A 57 457 79 HOH HOH . 
E 5 HOH A 58 458 80 HOH HOH . 
E 5 HOH A 59 459 83 HOH HOH . 
E 5 HOH A 60 460 89 HOH HOH . 
E 5 HOH A 61 461 97 HOH HOH . 
E 5 HOH A 62 462 99 HOH HOH . 
E 5 HOH A 63 463 100 HOH HOH . 
E 5 HOH A 64 464 113 HOH HOH . 
E 5 HOH A 65 465 120 HOH HOH . 
E 5 HOH A 66 466 121 HOH HOH . 
E 5 HOH A 67 467 125 HOH HOH . 
E 5 HOH A 68 468 129 HOH HOH . 
E 5 HOH A 69 469 130 HOH HOH . 
E 5 HOH A 70 470 132 HOH HOH . 
E 5 HOH A 71 471 135 HOH HOH . 
E 5 HOH A 72 472 146 HOH HOH . 
E 5 HOH A 73 473 150 HOH HOH . 
E 5 HOH A 74 474 159 HOH HOH . 
E 5 HOH A 75 475 162 HOH HOH . 
E 5 HOH A 76 476 163 HOH HOH . 
E 5 HOH A 77 477 168 HOH HOH . 
F 5 HOH B 1 201 68 HOH HOH . 
F 5 HOH B 2 202 60 HOH HOH . 
F 5 HOH B 3 203 62 HOH HOH . 
F 5 HOH B 4 204 81 HOH HOH . 
F 5 HOH B 5 205 34 HOH HOH . 
F 5 HOH B 6 206 143 HOH HOH . 
F 5 HOH B 7 207 1 HOH HOH . 
F 5 HOH B 8 208 5 HOH HOH . 
F 5 HOH B 9 209 9 HOH HOH . 
F 5 HOH B 10 210 11 HOH HOH . 
F 5 HOH B 11 211 17 HOH HOH . 
F 5 HOH B 12 212 19 HOH HOH . 
F 5 HOH B 13 213 24 HOH HOH . 
F 5 HOH B 14 214 27 HOH HOH . 
F 5 HOH B 15 215 30 HOH HOH . 
F 5 HOH B 16 216 31 HOH HOH . 
F 5 HOH B 17 217 32 HOH HOH . 
F 5 HOH B 18 218 36 HOH HOH . 
F 5 HOH B 19 219 38 HOH HOH . 
F 5 HOH B 20 220 41 HOH HOH . 
F 5 HOH B 21 221 45 HOH HOH . 
F 5 HOH B 22 222 46 HOH HOH . 
F 5 HOH B 23 223 47 HOH HOH . 
F 5 HOH B 24 224 49 HOH HOH . 
F 5 HOH B 25 225 51 HOH HOH . 
F 5 HOH B 26 226 57 HOH HOH . 
F 5 HOH B 27 227 58 HOH HOH . 
F 5 HOH B 28 228 59 HOH HOH . 
F 5 HOH B 29 229 64 HOH HOH . 
F 5 HOH B 30 230 67 HOH HOH . 
F 5 HOH B 31 231 71 HOH HOH . 
F 5 HOH B 32 232 75 HOH HOH . 
F 5 HOH B 33 233 77 HOH HOH . 
F 5 HOH B 34 234 78 HOH HOH . 
F 5 HOH B 35 235 84 HOH HOH . 
F 5 HOH B 36 236 85 HOH HOH . 
F 5 HOH B 37 237 88 HOH HOH . 
F 5 HOH B 38 238 93 HOH HOH . 
F 5 HOH B 39 239 104 HOH HOH . 
F 5 HOH B 40 240 107 HOH HOH . 
F 5 HOH B 41 241 108 HOH HOH . 
F 5 HOH B 42 242 117 HOH HOH . 
F 5 HOH B 43 243 119 HOH HOH . 
F 5 HOH B 44 244 128 HOH HOH . 
F 5 HOH B 45 245 133 HOH HOH . 
F 5 HOH B 46 246 137 HOH HOH . 
F 5 HOH B 47 247 139 HOH HOH . 
F 5 HOH B 48 248 149 HOH HOH . 
F 5 HOH B 49 249 156 HOH HOH . 
F 5 HOH B 50 250 161 HOH HOH . 
F 5 HOH B 51 251 175 HOH HOH . 
F 5 HOH B 52 252 180 HOH HOH . 
F 5 HOH B 53 253 181 HOH HOH . 
F 5 HOH B 54 254 182 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLT . . . C 3 23.968 105.767 34.841 1 81.61 ? C1 MLT 301 A 1 
HETATM 2 O O1 MLT . . . C 3 23.483 104.946 34.029 1 79 ? O1 MLT 301 A 1 
HETATM 3 O O2 MLT . . . C 3 24.018 105.451 36.049 1 83.19 ? O2 MLT 301 A 1 
HETATM 4 C C2 MLT . . . C 3 24.481 107.113 34.385 1 80.19 ? C2 MLT 301 A 1 
HETATM 5 O O3 MLT . . . C 3 24.474 107.229 32.978 1 76.05 ? O3 MLT 301 A 1 
HETATM 6 C C3 MLT . . . C 3 25.846 107.441 35.003 1 81.12 ? C3 MLT 301 A 1 
HETATM 7 C C4 MLT . . . C 3 27.023 107.327 34.047 1 82.56 ? C4 MLT 301 A 1 
HETATM 8 O O4 MLT . . . C 3 26.991 106.569 33.05 1 81.22 ? O4 MLT 301 A 1 
HETATM 9 O O5 MLT . . . C 3 28.068 107.994 34.252 1 82.3 ? O5 MLT 301 A 1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           9 
#