data_4X6E
#
_model_server_result.job_id            aUZFkSmZJRmRjoOkChCznA 
_model_server_result.datetime_utc      '2025-06-26 07:24:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4x6e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    4X6E 
#
_exptl.entry_id    4X6E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.675 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(4R,7R,18Z)-4,7-dihydroxy-N,N,N-trimethyl-10-oxo-3,5,9-trioxa-4-phosphaheptacos-18-en-1-aminium 4-oxide' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4X6E 
_cell.length_a            42.299 
_cell.length_b            90.663 
_cell.length_c            108.066 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4X6E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 99 A CYS 102 1_555 A SG CYS 163 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf2 A SG CYS 203 A CYS 206 1_555 A SG CYS 258 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
#
_chem_comp.formula           'C26 H53 N O7 P 1' 
_chem_comp.formula_weight    522.675 
_chem_comp.id                42H 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(4R,7R,18Z)-4,7-dihydroxy-N,N,N-trimethyl-10-oxo-3,5,9-trioxa-4-phosphaheptacos-18-en-1-aminium 4-oxide' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C19 C18 42H sing 1 n n 
C19 C20 42H sing 2 n n 
C18 C17 42H sing 3 n n 
C17 C16 42H doub 4 z n 
C20 C21 42H sing 5 n n 
C21 C22 42H sing 6 n n 
C22 C23 42H sing 7 n n 
C16 C15 42H sing 8 n n 
C23 C24 42H sing 9 n n 
C15 C14 42H sing 10 n n 
C24 C25 42H sing 11 n n 
C14 C13 42H sing 12 n n 
C12 C13 42H sing 13 n n 
C12 C11 42H sing 14 n n 
C11 C10 42H sing 15 n n 
C10 C9 42H sing 16 n n 
O6 C8 42H doub 17 n n 
C8 O5 42H sing 18 n n 
C8 C9 42H sing 19 n n 
O5 C7 42H sing 20 n n 
C C7 42H sing 21 n n 
C O 42H sing 22 n n 
C C1 42H sing 23 n n 
O4 P 42H doub 24 n n 
C1 O1 42H sing 25 n n 
O1 P 42H sing 26 n n 
P O3 42H sing 27 n n 
P O2 42H sing 28 n n 
O3 C2 42H sing 29 n n 
C2 C3 42H sing 30 n n 
C3 N 42H sing 31 n n 
C5 N 42H sing 32 n n 
C6 N 42H sing 33 n n 
N C4 42H sing 34 n n 
C7 H1 42H sing 35 n n 
C7 H2 42H sing 36 n n 
C H3 42H sing 37 n n 
C1 H4 42H sing 38 n n 
C1 H5 42H sing 39 n n 
C2 H6 42H sing 40 n n 
C2 H7 42H sing 41 n n 
C3 H8 42H sing 42 n n 
C3 H9 42H sing 43 n n 
C6 H10 42H sing 44 n n 
C6 H11 42H sing 45 n n 
C6 H12 42H sing 46 n n 
C5 H13 42H sing 47 n n 
C5 H14 42H sing 48 n n 
C5 H15 42H sing 49 n n 
C4 H16 42H sing 50 n n 
C4 H17 42H sing 51 n n 
C4 H18 42H sing 52 n n 
O2 H19 42H sing 53 n n 
O H20 42H sing 54 n n 
C9 H21 42H sing 55 n n 
C9 H22 42H sing 56 n n 
C10 H23 42H sing 57 n n 
C10 H24 42H sing 58 n n 
C11 H25 42H sing 59 n n 
C11 H26 42H sing 60 n n 
C12 H27 42H sing 61 n n 
C12 H28 42H sing 62 n n 
C13 H29 42H sing 63 n n 
C13 H30 42H sing 64 n n 
C14 H31 42H sing 65 n n 
C14 H32 42H sing 66 n n 
C15 H33 42H sing 67 n n 
C15 H34 42H sing 68 n n 
C16 H35 42H sing 69 n n 
C17 H36 42H sing 70 n n 
C18 H37 42H sing 71 n n 
C18 H38 42H sing 72 n n 
C19 H39 42H sing 73 n n 
C19 H40 42H sing 74 n n 
C20 H41 42H sing 75 n n 
C20 H42 42H sing 76 n n 
C21 H43 42H sing 77 n n 
C21 H44 42H sing 78 n n 
C22 H45 42H sing 79 n n 
C22 H46 42H sing 80 n n 
C23 H47 42H sing 81 n n 
C23 H48 42H sing 82 n n 
C24 H49 42H sing 83 n n 
C24 H50 42H sing 84 n n 
C25 H51 42H sing 85 n n 
C25 H52 42H sing 86 n n 
C25 H53 42H sing 87 n n 
#
_atom_sites.entry_id                     4X6E 
_atom_sites.fract_transf_matrix[1][1]    0.023641 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01103 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009254 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MLT A 1 301 1 MLT MLT . 
D 4 42H A 1 302 901 42H LPC . 
E 5 HOH A 1 401 96 HOH HOH . 
E 5 HOH A 2 402 115 HOH HOH . 
E 5 HOH A 3 403 178 HOH HOH . 
E 5 HOH A 4 404 10 HOH HOH . 
E 5 HOH A 5 405 87 HOH HOH . 
E 5 HOH A 6 406 13 HOH HOH . 
E 5 HOH A 7 407 4 HOH HOH . 
E 5 HOH A 8 408 116 HOH HOH . 
E 5 HOH A 9 409 136 HOH HOH . 
E 5 HOH A 10 410 52 HOH HOH . 
E 5 HOH A 11 411 92 HOH HOH . 
E 5 HOH A 12 412 82 HOH HOH . 
E 5 HOH A 13 413 43 HOH HOH . 
E 5 HOH A 14 414 14 HOH HOH . 
E 5 HOH A 15 415 111 HOH HOH . 
E 5 HOH A 16 416 21 HOH HOH . 
E 5 HOH A 17 417 53 HOH HOH . 
E 5 HOH A 18 418 157 HOH HOH . 
E 5 HOH A 19 419 37 HOH HOH . 
E 5 HOH A 20 420 158 HOH HOH . 
E 5 HOH A 21 421 26 HOH HOH . 
E 5 HOH A 22 422 15 HOH HOH . 
E 5 HOH A 23 423 112 HOH HOH . 
E 5 HOH A 24 424 74 HOH HOH . 
E 5 HOH A 25 425 138 HOH HOH . 
E 5 HOH A 26 426 105 HOH HOH . 
E 5 HOH A 27 427 61 HOH HOH . 
E 5 HOH A 28 428 127 HOH HOH . 
E 5 HOH A 29 429 141 HOH HOH . 
E 5 HOH A 30 430 131 HOH HOH . 
E 5 HOH A 31 431 66 HOH HOH . 
E 5 HOH A 32 432 124 HOH HOH . 
E 5 HOH A 33 433 2 HOH HOH . 
E 5 HOH A 34 434 3 HOH HOH . 
E 5 HOH A 35 435 6 HOH HOH . 
E 5 HOH A 36 436 7 HOH HOH . 
E 5 HOH A 37 437 12 HOH HOH . 
E 5 HOH A 38 438 16 HOH HOH . 
E 5 HOH A 39 439 20 HOH HOH . 
E 5 HOH A 40 440 22 HOH HOH . 
E 5 HOH A 41 441 23 HOH HOH . 
E 5 HOH A 42 442 25 HOH HOH . 
E 5 HOH A 43 443 28 HOH HOH . 
E 5 HOH A 44 444 29 HOH HOH . 
E 5 HOH A 45 445 35 HOH HOH . 
E 5 HOH A 46 446 39 HOH HOH . 
E 5 HOH A 47 447 40 HOH HOH . 
E 5 HOH A 48 448 44 HOH HOH . 
E 5 HOH A 49 449 48 HOH HOH . 
E 5 HOH A 50 450 50 HOH HOH . 
E 5 HOH A 51 451 54 HOH HOH . 
E 5 HOH A 52 452 56 HOH HOH . 
E 5 HOH A 53 453 65 HOH HOH . 
E 5 HOH A 54 454 70 HOH HOH . 
E 5 HOH A 55 455 72 HOH HOH . 
E 5 HOH A 56 456 73 HOH HOH . 
E 5 HOH A 57 457 79 HOH HOH . 
E 5 HOH A 58 458 80 HOH HOH . 
E 5 HOH A 59 459 83 HOH HOH . 
E 5 HOH A 60 460 89 HOH HOH . 
E 5 HOH A 61 461 97 HOH HOH . 
E 5 HOH A 62 462 99 HOH HOH . 
E 5 HOH A 63 463 100 HOH HOH . 
E 5 HOH A 64 464 113 HOH HOH . 
E 5 HOH A 65 465 120 HOH HOH . 
E 5 HOH A 66 466 121 HOH HOH . 
E 5 HOH A 67 467 125 HOH HOH . 
E 5 HOH A 68 468 129 HOH HOH . 
E 5 HOH A 69 469 130 HOH HOH . 
E 5 HOH A 70 470 132 HOH HOH . 
E 5 HOH A 71 471 135 HOH HOH . 
E 5 HOH A 72 472 146 HOH HOH . 
E 5 HOH A 73 473 150 HOH HOH . 
E 5 HOH A 74 474 159 HOH HOH . 
E 5 HOH A 75 475 162 HOH HOH . 
E 5 HOH A 76 476 163 HOH HOH . 
E 5 HOH A 77 477 168 HOH HOH . 
F 5 HOH B 1 201 68 HOH HOH . 
F 5 HOH B 2 202 60 HOH HOH . 
F 5 HOH B 3 203 62 HOH HOH . 
F 5 HOH B 4 204 81 HOH HOH . 
F 5 HOH B 5 205 34 HOH HOH . 
F 5 HOH B 6 206 143 HOH HOH . 
F 5 HOH B 7 207 1 HOH HOH . 
F 5 HOH B 8 208 5 HOH HOH . 
F 5 HOH B 9 209 9 HOH HOH . 
F 5 HOH B 10 210 11 HOH HOH . 
F 5 HOH B 11 211 17 HOH HOH . 
F 5 HOH B 12 212 19 HOH HOH . 
F 5 HOH B 13 213 24 HOH HOH . 
F 5 HOH B 14 214 27 HOH HOH . 
F 5 HOH B 15 215 30 HOH HOH . 
F 5 HOH B 16 216 31 HOH HOH . 
F 5 HOH B 17 217 32 HOH HOH . 
F 5 HOH B 18 218 36 HOH HOH . 
F 5 HOH B 19 219 38 HOH HOH . 
F 5 HOH B 20 220 41 HOH HOH . 
F 5 HOH B 21 221 45 HOH HOH . 
F 5 HOH B 22 222 46 HOH HOH . 
F 5 HOH B 23 223 47 HOH HOH . 
F 5 HOH B 24 224 49 HOH HOH . 
F 5 HOH B 25 225 51 HOH HOH . 
F 5 HOH B 26 226 57 HOH HOH . 
F 5 HOH B 27 227 58 HOH HOH . 
F 5 HOH B 28 228 59 HOH HOH . 
F 5 HOH B 29 229 64 HOH HOH . 
F 5 HOH B 30 230 67 HOH HOH . 
F 5 HOH B 31 231 71 HOH HOH . 
F 5 HOH B 32 232 75 HOH HOH . 
F 5 HOH B 33 233 77 HOH HOH . 
F 5 HOH B 34 234 78 HOH HOH . 
F 5 HOH B 35 235 84 HOH HOH . 
F 5 HOH B 36 236 85 HOH HOH . 
F 5 HOH B 37 237 88 HOH HOH . 
F 5 HOH B 38 238 93 HOH HOH . 
F 5 HOH B 39 239 104 HOH HOH . 
F 5 HOH B 40 240 107 HOH HOH . 
F 5 HOH B 41 241 108 HOH HOH . 
F 5 HOH B 42 242 117 HOH HOH . 
F 5 HOH B 43 243 119 HOH HOH . 
F 5 HOH B 44 244 128 HOH HOH . 
F 5 HOH B 45 245 133 HOH HOH . 
F 5 HOH B 46 246 137 HOH HOH . 
F 5 HOH B 47 247 139 HOH HOH . 
F 5 HOH B 48 248 149 HOH HOH . 
F 5 HOH B 49 249 156 HOH HOH . 
F 5 HOH B 50 250 161 HOH HOH . 
F 5 HOH B 51 251 175 HOH HOH . 
F 5 HOH B 52 252 180 HOH HOH . 
F 5 HOH B 53 253 181 HOH HOH . 
F 5 HOH B 54 254 182 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O6 42H . . . D 4 30.252 105.921 22.945 1 79.65 ? O6 42H 302 A 1 
HETATM 2 C C8 42H . . . D 4 29.758 104.825 22.85 1 84.84 ? C8 42H 302 A 1 
HETATM 3 O O5 42H . . . D 4 28.845 104.489 21.934 1 100.8 ? O5 42H 302 A 1 
HETATM 4 C C7 42H . . . D 4 28.209 105.555 21.194 1 111.31 ? C7 42H 302 A 1 
HETATM 5 C C 42H . . . D 4 27.649 105.063 19.876 1 115.13 ? C 42H 302 A 1 
HETATM 6 C C1 42H . . . D 4 26.59 105.984 19.316 1 115.37 ? C1 42H 302 A 1 
HETATM 7 O O1 42H . . . D 4 27.172 107.105 18.607 1 115.6 ? O1 42H 302 A 1 
HETATM 8 P P 42H . . . D 4 28.653 107.723 18.594 1 234.91 ? P 42H 302 A 1 
HETATM 9 O O4 42H . . . D 4 28.7 108.82 17.602 1 234.74 ? O4 42H 302 A 1 
HETATM 10 O O3 42H . . . D 4 29.782 106.575 18.259 1 69.63 ? O3 42H 302 A 1 
HETATM 11 C C2 42H . . . D 4 31.135 106.528 18.79 1 69.84 ? C2 42H 302 A 1 
HETATM 12 C C3 42H . . . D 4 31.782 107.887 18.688 1 71.16 ? C3 42H 302 A 1 
HETATM 13 N N 42H . . . D 4 33.199 107.923 18.147 1 64.79 ? N 42H 302 A 1 
HETATM 14 C C6 42H . . . D 4 33.81 109.279 18.361 1 59.81 ? C6 42H 302 A 1 
HETATM 15 C C5 42H . . . D 4 34.011 106.896 18.866 1 62.85 ? C5 42H 302 A 1 
HETATM 16 C C4 42H . . . D 4 33.21 107.614 16.685 1 65.11 ? C4 42H 302 A 1 
HETATM 17 O O2 42H . . . D 4 28.939 108.307 19.977 1 234.76 ? O2 42H 302 A 1 
HETATM 18 O O 42H . . . D 4 27.111 103.74 20.006 1 114.95 ? O 42H 302 A 1 
HETATM 19 C C9 42H . . . D 4 30.062 103.658 23.738 1 74.45 ? C9 42H 302 A 1 
HETATM 20 C C10 42H . . . D 4 29.255 102.413 23.389 1 62.89 ? C10 42H 302 A 1 
HETATM 21 C C11 42H . . . D 4 27.83 102.424 23.915 1 50.95 ? C11 42H 302 A 1 
HETATM 22 C C12 42H . . . D 4 27.131 101.081 23.794 1 46.36 ? C12 42H 302 A 1 
HETATM 23 C C13 42H . . . D 4 26.366 100.697 25.049 1 46.1 ? C13 42H 302 A 1 
HETATM 24 C C14 42H . . . D 4 25.41 101.783 25.491 1 48.87 ? C14 42H 302 A 1 
HETATM 25 C C15 42H . . . D 4 24.873 101.621 26.898 1 48.89 ? C15 42H 302 A 1 
HETATM 26 C C16 42H . . . D 4 23.825 100.582 27.028 1 50.85 ? C16 42H 302 A 1 
HETATM 27 C C17 42H . . . D 4 22.529 100.765 26.882 1 50.88 ? C17 42H 302 A 1 
HETATM 28 C C18 42H . . . D 4 21.832 102.035 26.516 1 48.55 ? C18 42H 302 A 1 
HETATM 29 C C19 42H . . . D 4 20.364 101.755 26.19 1 46.52 ? C19 42H 302 A 1 
HETATM 30 C C20 42H . . . D 4 19.711 102.736 25.227 1 44.93 ? C20 42H 302 A 1 
HETATM 31 C C21 42H . . . D 4 20.224 102.67 23.794 1 44.08 ? C21 42H 302 A 1 
HETATM 32 C C22 42H . . . D 4 19.358 103.437 22.801 1 43.25 ? C22 42H 302 A 1 
HETATM 33 C C23 42H . . . D 4 19.906 103.437 21.382 1 44.09 ? C23 42H 302 A 1 
HETATM 34 C C24 42H . . . D 4 19.061 104.179 20.357 1 46.46 ? C24 42H 302 A 1 
HETATM 35 C C25 42H . . . D 4 18.871 105.624 20.7 1 49.34 ? C25 42H 302 A 1 
#
_model_server_stats.io_time_ms              42 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           353 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           35 
#