data_4X6I # _model_server_result.job_id QNDdQ2wuN8Mj0-HPH8IP5A _model_server_result.datetime_utc '2024-11-17 03:33:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x6i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4X6I # _exptl.entry_id 4X6I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 379.252 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-amino-4-bromo-N-{1-[(cyanomethyl)carbamoyl]cyclohexyl}benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4X6I _cell.length_a 36.459 _cell.length_b 54.45 _cell.length_c 87.87 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X6I _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf3 A SG CYS 155 A CYS 155 1_555 A SG CYS 204 A CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? # _chem_comp.formula 'C16 H19 Br N4 O2' _chem_comp.formula_weight 379.252 _chem_comp.id 3Y1 _chem_comp.mon_nstd_flag . _chem_comp.name 2-amino-4-bromo-N-{1-[(cyanomethyl)carbamoyl]cyclohexyl}benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C10 3Y1 sing 1 n n C9 C8 3Y1 sing 2 n n C10 C11 3Y1 sing 3 n n C8 C7 3Y1 sing 4 n n C11 C6 3Y1 sing 5 n n C7 C6 3Y1 sing 6 n n C6 N12 3Y1 sing 7 n n C6 C4 3Y1 sing 8 n n N12 C13 3Y1 sing 9 n n C4 N3 3Y1 sing 10 n n C4 O5 3Y1 doub 11 n n C20 C19 3Y1 doub 12 n y C20 C15 3Y1 sing 13 n y N3 C2 3Y1 sing 14 n n C13 C15 3Y1 sing 15 n n C13 O14 3Y1 doub 16 n n C19 C18 3Y1 sing 17 n y C15 C16 3Y1 doub 18 n y C2 C1 3Y1 sing 19 n n C18 BR2 3Y1 sing 20 n n C18 C17 3Y1 doub 21 n y C16 C17 3Y1 sing 22 n y C16 N21 3Y1 sing 23 n n C1 N1 3Y1 trip 24 n n C2 H1 3Y1 sing 25 n n C2 H2 3Y1 sing 26 n n C8 H3 3Y1 sing 27 n n C8 H4 3Y1 sing 28 n n C9 H5 3Y1 sing 29 n n C9 H6 3Y1 sing 30 n n C10 H7 3Y1 sing 31 n n C10 H8 3Y1 sing 32 n n C11 H9 3Y1 sing 33 n n C11 H10 3Y1 sing 34 n n C20 H11 3Y1 sing 35 n n N3 H12 3Y1 sing 36 n n C7 H13 3Y1 sing 37 n n C7 H14 3Y1 sing 38 n n N12 H15 3Y1 sing 39 n n C17 H16 3Y1 sing 40 n n C19 H17 3Y1 sing 41 n n N21 H18 3Y1 sing 42 n n N21 H19 3Y1 sing 43 n n # _atom_sites.entry_id 4X6I _atom_sites.fract_transf_matrix[1][1] 0.027428 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018365 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01138 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3Y1 A 1 301 1 3Y1 30A . C 3 SO4 A 1 302 1 SO4 SO4 . D 3 SO4 A 1 303 2 SO4 SO4 . E 3 SO4 A 1 304 3 SO4 SO4 . F 3 SO4 A 1 305 4 SO4 SO4 . G 3 SO4 A 1 306 5 SO4 SO4 . H 4 HOH A 1 401 11 HOH HOH . H 4 HOH A 2 402 68 HOH HOH . H 4 HOH A 3 403 51 HOH HOH . H 4 HOH A 4 404 1 HOH HOH . H 4 HOH A 5 405 40 HOH HOH . H 4 HOH A 6 406 95 HOH HOH . H 4 HOH A 7 407 55 HOH HOH . H 4 HOH A 8 408 43 HOH HOH . H 4 HOH A 9 409 67 HOH HOH . H 4 HOH A 10 410 122 HOH HOH . H 4 HOH A 11 411 171 HOH HOH . H 4 HOH A 12 412 201 HOH HOH . H 4 HOH A 13 413 223 HOH HOH . H 4 HOH A 14 414 78 HOH HOH . H 4 HOH A 15 415 190 HOH HOH . H 4 HOH A 16 416 49 HOH HOH . H 4 HOH A 17 417 75 HOH HOH . H 4 HOH A 18 418 121 HOH HOH . H 4 HOH A 19 419 72 HOH HOH . H 4 HOH A 20 420 185 HOH HOH . H 4 HOH A 21 421 161 HOH HOH . H 4 HOH A 22 422 222 HOH HOH . H 4 HOH A 23 423 132 HOH HOH . H 4 HOH A 24 424 83 HOH HOH . H 4 HOH A 25 425 111 HOH HOH . H 4 HOH A 26 426 34 HOH HOH . H 4 HOH A 27 427 44 HOH HOH . H 4 HOH A 28 428 199 HOH HOH . H 4 HOH A 29 429 203 HOH HOH . H 4 HOH A 30 430 16 HOH HOH . H 4 HOH A 31 431 38 HOH HOH . H 4 HOH A 32 432 227 HOH HOH . H 4 HOH A 33 433 63 HOH HOH . H 4 HOH A 34 434 14 HOH HOH . H 4 HOH A 35 435 133 HOH HOH . H 4 HOH A 36 436 120 HOH HOH . H 4 HOH A 37 437 149 HOH HOH . H 4 HOH A 38 438 9 HOH HOH . H 4 HOH A 39 439 76 HOH HOH . H 4 HOH A 40 440 36 HOH HOH . H 4 HOH A 41 441 131 HOH HOH . H 4 HOH A 42 442 42 HOH HOH . H 4 HOH A 43 443 141 HOH HOH . H 4 HOH A 44 444 2 HOH HOH . H 4 HOH A 45 445 207 HOH HOH . H 4 HOH A 46 446 23 HOH HOH . H 4 HOH A 47 447 17 HOH HOH . H 4 HOH A 48 448 129 HOH HOH . H 4 HOH A 49 449 103 HOH HOH . H 4 HOH A 50 450 4 HOH HOH . H 4 HOH A 51 451 13 HOH HOH . H 4 HOH A 52 452 97 HOH HOH . H 4 HOH A 53 453 79 HOH HOH . H 4 HOH A 54 454 65 HOH HOH . H 4 HOH A 55 455 153 HOH HOH . H 4 HOH A 56 456 47 HOH HOH . H 4 HOH A 57 457 29 HOH HOH . H 4 HOH A 58 458 6 HOH HOH . H 4 HOH A 59 459 110 HOH HOH . H 4 HOH A 60 460 62 HOH HOH . H 4 HOH A 61 461 19 HOH HOH . H 4 HOH A 62 462 46 HOH HOH . H 4 HOH A 63 463 64 HOH HOH . H 4 HOH A 64 464 86 HOH HOH . H 4 HOH A 65 465 82 HOH HOH . H 4 HOH A 66 466 27 HOH HOH . H 4 HOH A 67 467 202 HOH HOH . H 4 HOH A 68 468 7 HOH HOH . H 4 HOH A 69 469 39 HOH HOH . H 4 HOH A 70 470 125 HOH HOH . H 4 HOH A 71 471 215 HOH HOH . H 4 HOH A 72 472 115 HOH HOH . H 4 HOH A 73 473 60 HOH HOH . H 4 HOH A 74 474 114 HOH HOH . H 4 HOH A 75 475 134 HOH HOH . H 4 HOH A 76 476 109 HOH HOH . H 4 HOH A 77 477 145 HOH HOH . H 4 HOH A 78 478 73 HOH HOH . H 4 HOH A 79 479 5 HOH HOH . H 4 HOH A 80 480 24 HOH HOH . H 4 HOH A 81 481 71 HOH HOH . H 4 HOH A 82 482 159 HOH HOH . H 4 HOH A 83 483 48 HOH HOH . H 4 HOH A 84 484 81 HOH HOH . H 4 HOH A 85 485 146 HOH HOH . H 4 HOH A 86 486 198 HOH HOH . H 4 HOH A 87 487 18 HOH HOH . H 4 HOH A 88 488 56 HOH HOH . H 4 HOH A 89 489 156 HOH HOH . H 4 HOH A 90 490 108 HOH HOH . H 4 HOH A 91 491 183 HOH HOH . H 4 HOH A 92 492 12 HOH HOH . H 4 HOH A 93 493 77 HOH HOH . H 4 HOH A 94 494 148 HOH HOH . H 4 HOH A 95 495 3 HOH HOH . H 4 HOH A 96 496 138 HOH HOH . H 4 HOH A 97 497 69 HOH HOH . H 4 HOH A 98 498 214 HOH HOH . H 4 HOH A 99 499 130 HOH HOH . H 4 HOH A 100 500 218 HOH HOH . H 4 HOH A 101 501 61 HOH HOH . H 4 HOH A 102 502 158 HOH HOH . H 4 HOH A 103 503 165 HOH HOH . H 4 HOH A 104 504 74 HOH HOH . H 4 HOH A 105 505 20 HOH HOH . H 4 HOH A 106 506 80 HOH HOH . H 4 HOH A 107 507 144 HOH HOH . H 4 HOH A 108 508 189 HOH HOH . H 4 HOH A 109 509 219 HOH HOH . H 4 HOH A 110 510 25 HOH HOH . H 4 HOH A 111 511 105 HOH HOH . H 4 HOH A 112 512 172 HOH HOH . H 4 HOH A 113 513 58 HOH HOH . H 4 HOH A 114 514 211 HOH HOH . H 4 HOH A 115 515 137 HOH HOH . H 4 HOH A 116 516 175 HOH HOH . H 4 HOH A 117 517 209 HOH HOH . H 4 HOH A 118 518 50 HOH HOH . H 4 HOH A 119 519 57 HOH HOH . H 4 HOH A 120 520 10 HOH HOH . H 4 HOH A 121 521 26 HOH HOH . H 4 HOH A 122 522 113 HOH HOH . H 4 HOH A 123 523 136 HOH HOH . H 4 HOH A 124 524 162 HOH HOH . H 4 HOH A 125 525 147 HOH HOH . H 4 HOH A 126 526 152 HOH HOH . H 4 HOH A 127 527 164 HOH HOH . H 4 HOH A 128 528 166 HOH HOH . H 4 HOH A 129 529 192 HOH HOH . H 4 HOH A 130 530 204 HOH HOH . H 4 HOH A 131 531 32 HOH HOH . H 4 HOH A 132 532 28 HOH HOH . H 4 HOH A 133 533 101 HOH HOH . H 4 HOH A 134 534 226 HOH HOH . H 4 HOH A 135 535 96 HOH HOH . H 4 HOH A 136 536 167 HOH HOH . H 4 HOH A 137 537 107 HOH HOH . H 4 HOH A 138 538 117 HOH HOH . H 4 HOH A 139 539 127 HOH HOH . H 4 HOH A 140 540 188 HOH HOH . H 4 HOH A 141 541 66 HOH HOH . H 4 HOH A 142 542 128 HOH HOH . H 4 HOH A 143 543 112 HOH HOH . H 4 HOH A 144 544 52 HOH HOH . H 4 HOH A 145 545 53 HOH HOH . H 4 HOH A 146 546 8 HOH HOH . H 4 HOH A 147 547 217 HOH HOH . H 4 HOH A 148 548 155 HOH HOH . H 4 HOH A 149 549 33 HOH HOH . H 4 HOH A 150 550 220 HOH HOH . H 4 HOH A 151 551 160 HOH HOH . H 4 HOH A 152 552 123 HOH HOH . H 4 HOH A 153 553 124 HOH HOH . H 4 HOH A 154 554 94 HOH HOH . H 4 HOH A 155 555 142 HOH HOH . H 4 HOH A 156 556 216 HOH HOH . H 4 HOH A 157 557 21 HOH HOH . H 4 HOH A 158 558 151 HOH HOH . H 4 HOH A 159 559 30 HOH HOH . H 4 HOH A 160 560 87 HOH HOH . H 4 HOH A 161 561 93 HOH HOH . H 4 HOH A 162 562 194 HOH HOH . H 4 HOH A 163 563 191 HOH HOH . H 4 HOH A 164 564 154 HOH HOH . H 4 HOH A 165 565 59 HOH HOH . H 4 HOH A 166 566 70 HOH HOH . H 4 HOH A 167 567 118 HOH HOH . H 4 HOH A 168 568 135 HOH HOH . H 4 HOH A 169 569 143 HOH HOH . H 4 HOH A 170 570 180 HOH HOH . H 4 HOH A 171 571 195 HOH HOH . H 4 HOH A 172 572 37 HOH HOH . H 4 HOH A 173 573 179 HOH HOH . H 4 HOH A 174 574 139 HOH HOH . H 4 HOH A 175 575 157 HOH HOH . H 4 HOH A 176 576 54 HOH HOH . H 4 HOH A 177 577 15 HOH HOH . H 4 HOH A 178 578 177 HOH HOH . H 4 HOH A 179 579 31 HOH HOH . H 4 HOH A 180 580 45 HOH HOH . H 4 HOH A 181 581 35 HOH HOH . H 4 HOH A 182 582 176 HOH HOH . H 4 HOH A 183 583 126 HOH HOH . H 4 HOH A 184 584 178 HOH HOH . H 4 HOH A 185 585 140 HOH HOH . H 4 HOH A 186 586 173 HOH HOH . H 4 HOH A 187 587 212 HOH HOH . H 4 HOH A 188 588 187 HOH HOH . H 4 HOH A 189 589 168 HOH HOH . H 4 HOH A 190 590 224 HOH HOH . H 4 HOH A 191 591 169 HOH HOH . H 4 HOH A 192 592 208 HOH HOH . H 4 HOH A 193 593 186 HOH HOH . H 4 HOH A 194 594 206 HOH HOH . H 4 HOH A 195 595 193 HOH HOH . H 4 HOH A 196 596 197 HOH HOH . H 4 HOH A 197 597 116 HOH HOH . H 4 HOH A 198 598 170 HOH HOH . H 4 HOH A 199 599 181 HOH HOH . H 4 HOH A 200 600 228 HOH HOH . H 4 HOH A 201 601 213 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3Y1 . . . B 2 13.341 10.15 -19.133 1 9.03 ? C1 3Y1 301 A 1 HETATM 2 C C2 3Y1 . . . B 2 13.086 8.735 -18.981 1 9.03 ? C2 3Y1 301 A 1 HETATM 3 C C4 3Y1 . . . B 2 15.285 7.642 -18.935 1 8.33 ? C4 3Y1 301 A 1 HETATM 4 C C6 3Y1 . . . B 2 16.208 6.571 -19.551 1 7.76 ? C6 3Y1 301 A 1 HETATM 5 C C8 3Y1 . . . B 2 16.833 4.099 -19.103 1 7.79 ? C8 3Y1 301 A 1 HETATM 6 C C9 3Y1 . . . B 2 16.532 3.767 -20.563 1 7.56 ? C9 3Y1 301 A 1 HETATM 7 C C10 3Y1 . . . B 2 16.743 4.976 -21.478 1 7.51 ? C10 3Y1 301 A 1 HETATM 8 C C11 3Y1 . . . B 2 15.836 6.135 -20.989 1 7.64 ? C11 3Y1 301 A 1 HETATM 9 C C13 3Y1 . . . B 2 17.983 8.222 -20.133 1 8.07 ? C13 3Y1 301 A 1 HETATM 10 C C15 3Y1 . . . B 2 19.279 8.73 -19.576 1 8.05 ? C15 3Y1 301 A 1 HETATM 11 C C16 3Y1 . . . B 2 19.53 10.091 -19.498 1 8.96 ? C16 3Y1 301 A 1 HETATM 12 C C20 3Y1 . . . B 2 20.18 7.817 -18.973 1 8.84 ? C20 3Y1 301 A 1 HETATM 13 N N1 3Y1 . . . B 2 13.573 11.269 -19.218 1 9.38 ? N1 3Y1 301 A 1 HETATM 14 N N3 3Y1 . . . B 2 14.111 7.883 -19.527 1 8.52 ? N3 3Y1 301 A 1 HETATM 15 O O5 3Y1 . . . B 2 15.576 8.217 -17.878 1 8.05 ? O5 3Y1 301 A 1 HETATM 16 C C7 3Y1 . . . B 2 16.052 5.351 -18.637 1 7.83 ? C7 3Y1 301 A 1 HETATM 17 N N12 3Y1 . . . B 2 17.602 7.035 -19.568 1 7.35 ? N12 3Y1 301 A 1 HETATM 18 O O14 3Y1 . . . B 2 17.19 8.95 -20.788 1 7.35 ? O14 3Y1 301 A 1 HETATM 19 C C17 3Y1 . . . B 2 20.658 10.542 -18.85 1 9.94 ? C17 3Y1 301 A 1 HETATM 20 C C18 3Y1 . . . B 2 21.528 9.641 -18.246 1 11.44 ? C18 3Y1 301 A 1 HETATM 21 C C19 3Y1 . . . B 2 21.319 8.269 -18.302 1 10.24 ? C19 3Y1 301 A 1 HETATM 22 N N21 3Y1 . . . B 2 18.704 11.138 -20.075 1 8.33 ? N21 3Y1 301 A 1 HETATM 23 BR BR2 3Y1 . . . B 2 23.014 10.388 -17.323 1 17.65 ? BR2 3Y1 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 23 #