data_4X7M
#
_model_server_result.job_id            OAzCmXM2vG30Db0SwadSCA 
_model_server_result.datetime_utc      '2025-02-05 14:53:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4x7m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    4X7M 
#
_exptl.entry_id    4X7M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              607.354 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         109.27 
_cell.angle_beta          99.03 
_cell.angle_gamma         101.53 
_cell.entry_id            4X7M 
_cell.length_a            44.072 
_cell.length_b            90.944 
_cell.length_c            94.441 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4X7M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C17 H27 N3 O17 P2' 
_chem_comp.formula_weight    607.354 
_chem_comp.id                UD1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1' C2' UD1 sing 358 n n 
C1' O1' UD1 sing 359 n n 
C1' O5' UD1 sing 360 n n 
C1' H1' UD1 sing 361 n n 
C2' C3' UD1 sing 362 n n 
C2' N2' UD1 sing 363 n n 
C2' H2' UD1 sing 364 n n 
C3' C4' UD1 sing 365 n n 
C3' O3' UD1 sing 366 n n 
C3' H3' UD1 sing 367 n n 
C4' C5' UD1 sing 368 n n 
C4' O4' UD1 sing 369 n n 
C4' H4' UD1 sing 370 n n 
C5' C6' UD1 sing 371 n n 
C5' O5' UD1 sing 372 n n 
C5' H5' UD1 sing 373 n n 
C6' O6' UD1 sing 374 n n 
C6' "H6'1" UD1 sing 375 n n 
C6' "H6'2" UD1 sing 376 n n 
C7' C8' UD1 sing 377 n n 
C7' N2' UD1 sing 378 n n 
C7' O7' UD1 doub 379 n n 
C8' "H8'1" UD1 sing 380 n n 
C8' "H8'2" UD1 sing 381 n n 
C8' "H8'3" UD1 sing 382 n n 
N2' HN2' UD1 sing 383 n n 
O1' PB UD1 sing 384 n n 
O3' HO3' UD1 sing 385 n n 
O4' HO4' UD1 sing 386 n n 
O6' HO6' UD1 sing 387 n n 
N1 C2 UD1 sing 388 n n 
N1 C6 UD1 sing 389 n n 
N1 C1B UD1 sing 390 n n 
C2 N3 UD1 sing 391 n n 
C2 O2 UD1 doub 392 n n 
N3 C4 UD1 sing 393 n n 
N3 HN3 UD1 sing 394 n n 
C4 C5 UD1 sing 395 n n 
C4 O4 UD1 doub 396 n n 
C5 C6 UD1 doub 397 n n 
C5 H5 UD1 sing 398 n n 
C6 H6 UD1 sing 399 n n 
C1B C2B UD1 sing 400 n n 
C1B O4B UD1 sing 401 n n 
C1B H1B UD1 sing 402 n n 
C2B O2' UD1 sing 403 n n 
C2B C3B UD1 sing 404 n n 
C2B H2B UD1 sing 405 n n 
O2' HO2' UD1 sing 406 n n 
C3B C4B UD1 sing 407 n n 
C3B O3B UD1 sing 408 n n 
C3B H3B UD1 sing 409 n n 
C4B O4B UD1 sing 410 n n 
C4B C5B UD1 sing 411 n n 
C4B H4B UD1 sing 412 n n 
O3B HO3A UD1 sing 413 n n 
C5B O5B UD1 sing 414 n n 
C5B "H5'1" UD1 sing 415 n n 
C5B "H5'2" UD1 sing 416 n n 
O5B PA UD1 sing 417 n n 
PA O1A UD1 doub 418 n n 
PA O2A UD1 sing 419 n n 
PA O3A UD1 sing 420 n n 
O2A HOA2 UD1 sing 421 n n 
O3A PB UD1 sing 422 n n 
PB O1B UD1 doub 423 n n 
PB O2B UD1 sing 424 n n 
O2B HOB2 UD1 sing 425 n n 
#
_atom_sites.entry_id                     4X7M 
_atom_sites.fract_transf_matrix[1][1]    0.02269 
_atom_sites.fract_transf_matrix[1][2]    0.004629 
_atom_sites.fract_transf_matrix[1][3]    0.005751 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011222 
_atom_sites.fract_transf_matrix[2][3]    0.004518 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011558 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 UDP A 1 500 500 UDP UDP . 
D 3 UD1 B 1 501 1 UD1 UD1 . 
E 4 HOH A 1 601 11 HOH HOH . 
E 4 HOH A 2 602 36 HOH HOH . 
E 4 HOH A 3 603 14 HOH HOH . 
E 4 HOH A 4 604 41 HOH HOH . 
E 4 HOH A 5 605 35 HOH HOH . 
E 4 HOH A 6 606 50 HOH HOH . 
E 4 HOH A 7 607 49 HOH HOH . 
E 4 HOH A 8 608 9 HOH HOH . 
E 4 HOH A 9 609 10 HOH HOH . 
E 4 HOH A 10 610 15 HOH HOH . 
E 4 HOH A 11 611 17 HOH HOH . 
E 4 HOH A 12 612 18 HOH HOH . 
E 4 HOH A 13 613 19 HOH HOH . 
E 4 HOH A 14 614 20 HOH HOH . 
E 4 HOH A 15 615 24 HOH HOH . 
E 4 HOH A 16 616 25 HOH HOH . 
E 4 HOH A 17 617 26 HOH HOH . 
E 4 HOH A 18 618 33 HOH HOH . 
E 4 HOH A 19 619 34 HOH HOH . 
E 4 HOH A 20 620 52 HOH HOH . 
E 4 HOH A 21 621 53 HOH HOH . 
E 4 HOH A 22 622 54 HOH HOH . 
E 4 HOH A 23 623 55 HOH HOH . 
E 4 HOH A 24 624 56 HOH HOH . 
E 4 HOH A 25 625 57 HOH HOH . 
E 4 HOH A 26 626 58 HOH HOH . 
E 4 HOH A 27 627 59 HOH HOH . 
E 4 HOH A 28 628 60 HOH HOH . 
E 4 HOH A 29 629 61 HOH HOH . 
E 4 HOH A 30 630 62 HOH HOH . 
E 4 HOH A 31 631 63 HOH HOH . 
E 4 HOH A 32 632 64 HOH HOH . 
E 4 HOH A 33 633 65 HOH HOH . 
E 4 HOH A 34 634 66 HOH HOH . 
E 4 HOH A 35 635 67 HOH HOH . 
E 4 HOH A 36 636 68 HOH HOH . 
E 4 HOH A 37 637 69 HOH HOH . 
F 4 HOH B 1 601 51 HOH HOH . 
F 4 HOH B 2 602 2 HOH HOH . 
F 4 HOH B 3 603 3 HOH HOH . 
F 4 HOH B 4 604 4 HOH HOH . 
F 4 HOH B 5 605 5 HOH HOH . 
F 4 HOH B 6 606 8 HOH HOH . 
F 4 HOH B 7 607 16 HOH HOH . 
F 4 HOH B 8 608 21 HOH HOH . 
F 4 HOH B 9 609 23 HOH HOH . 
F 4 HOH B 10 610 27 HOH HOH . 
F 4 HOH B 11 611 28 HOH HOH . 
F 4 HOH B 12 612 29 HOH HOH . 
F 4 HOH B 13 613 30 HOH HOH . 
F 4 HOH B 14 614 31 HOH HOH . 
F 4 HOH B 15 615 38 HOH HOH . 
F 4 HOH B 16 616 40 HOH HOH . 
F 4 HOH B 17 617 42 HOH HOH . 
F 4 HOH B 18 618 43 HOH HOH . 
F 4 HOH B 19 619 44 HOH HOH . 
F 4 HOH B 20 620 45 HOH HOH . 
F 4 HOH B 21 621 47 HOH HOH . 
F 4 HOH B 22 622 48 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1' UD1 . . . D 3 -8.594 -26.016 -74.56 1 77.67 ? C1' UD1 501 B 1 
HETATM 2 C C2' UD1 . . . D 3 -9.056 -26.088 -76.056 1 83.45 ? C2' UD1 501 B 1 
HETATM 3 C C3' UD1 . . . D 3 -8.004 -26.906 -76.916 1 83.1 ? C3' UD1 501 B 1 
HETATM 4 C C4' UD1 . . . D 3 -6.552 -26.355 -76.779 1 80.21 ? C4' UD1 501 B 1 
HETATM 5 C C5' UD1 . . . D 3 -6.167 -26.179 -75.28 1 76 ? C5' UD1 501 B 1 
HETATM 6 C C6' UD1 . . . D 3 -4.858 -25.41 -75.096 1 73.04 ? C6' UD1 501 B 1 
HETATM 7 C C7' UD1 . . . D 3 -11.527 -26.158 -76.753 1 91.53 ? C7' UD1 501 B 1 
HETATM 8 C C8' UD1 . . . D 3 -11.384 -24.844 -77.525 1 91.01 ? C8' UD1 501 B 1 
HETATM 9 N N2' UD1 . . . D 3 -10.421 -26.672 -76.138 1 88.5 ? N2' UD1 501 B 1 
HETATM 10 O O1' UD1 . . . D 3 -8.55 -27.334 -73.91 1 73.13 ? O1' UD1 501 B 1 
HETATM 11 O O3' UD1 . . . D 3 -8.361 -26.947 -78.306 1 83.7 ? O3' UD1 501 B 1 
HETATM 12 O O4' UD1 . . . D 3 -5.619 -27.245 -77.443 1 80.55 ? O4' UD1 501 B 1 
HETATM 13 O O5' UD1 . . . D 3 -7.222 -25.455 -74.534 1 77.81 ? O5' UD1 501 B 1 
HETATM 14 O O6' UD1 . . . D 3 -4.014 -25.491 -76.247 1 72.42 ? O6' UD1 501 B 1 
HETATM 15 O O7' UD1 . . . D 3 -12.621 -26.73 -76.741 1 94.29 ? O7' UD1 501 B 1 
HETATM 16 N N1 UD1 . . . D 3 -7.337 -33.88 -68.354 1 65.59 ? N1 UD1 501 B 1 
HETATM 17 C C2 UD1 . . . D 3 -6.856 -34.686 -67.369 1 66.86 ? C2 UD1 501 B 1 
HETATM 18 N N3 UD1 . . . D 3 -7.727 -35.555 -66.689 1 66.73 ? N3 UD1 501 B 1 
HETATM 19 C C4 UD1 . . . D 3 -9.092 -35.631 -67.049 1 68.19 ? C4 UD1 501 B 1 
HETATM 20 C C5 UD1 . . . D 3 -9.605 -34.787 -68.035 1 64.66 ? C5 UD1 501 B 1 
HETATM 21 C C6 UD1 . . . D 3 -8.725 -33.933 -68.704 1 63.86 ? C6 UD1 501 B 1 
HETATM 22 O O2 UD1 . . . D 3 -5.675 -34.661 -67.022 1 68.51 ? O2 UD1 501 B 1 
HETATM 23 O O4 UD1 . . . D 3 -9.834 -36.412 -66.452 1 70.94 ? O4 UD1 501 B 1 
HETATM 24 C C1B UD1 . . . D 3 -6.428 -32.972 -69.115 1 64.54 ? C1B UD1 501 B 1 
HETATM 25 C C2B UD1 . . . D 3 -5.649 -33.746 -70.19 1 66.7 ? C2B UD1 501 B 1 
HETATM 26 O O2' UD1 . . . D 3 -4.299 -34.013 -69.717 1 72.83 ? O2' UD1 501 B 1 
HETATM 27 C C3B UD1 . . . D 3 -5.619 -32.811 -71.375 1 63.87 ? C3B UD1 501 B 1 
HETATM 28 C C4B UD1 . . . D 3 -6.417 -31.587 -70.928 1 62.58 ? C4B UD1 501 B 1 
HETATM 29 O O4B UD1 . . . D 3 -7.214 -32.026 -69.846 1 61.84 ? O4B UD1 501 B 1 
HETATM 30 O O3B UD1 . . . D 3 -4.272 -32.424 -71.715 1 62.73 ? O3B UD1 501 B 1 
HETATM 31 C C5B UD1 . . . D 3 -7.543 -31.26 -71.916 1 63.89 ? C5B UD1 501 B 1 
HETATM 32 O O5B UD1 . . . D 3 -7.054 -30.729 -73.156 1 65.35 ? O5B UD1 501 B 1 
HETATM 33 P PA UD1 . . . D 3 -8.108 -30.377 -74.346 1 69.48 ? PA UD1 501 B 1 
HETATM 34 O O1A UD1 . . . D 3 -7.335 -29.459 -75.25 1 63 ? O1A UD1 501 B 1 
HETATM 35 O O2A UD1 . . . D 3 -8.651 -31.65 -74.93 1 72.23 ? O2A UD1 501 B 1 
HETATM 36 O O3A UD1 . . . D 3 -9.466 -29.729 -73.538 1 69.44 ? O3A UD1 501 B 1 
HETATM 37 P PB UD1 . . . D 3 -9.742 -28.156 -73.111 1 72.47 ? PB UD1 501 B 1 
HETATM 38 O O1B UD1 . . . D 3 -11.073 -27.734 -73.595 1 73.22 ? O1B UD1 501 B 1 
HETATM 39 O O2B UD1 . . . D 3 -9.46 -28.053 -71.674 1 72.33 ? O2B UD1 501 B 1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           425 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           39 
#