data_4X89 # _model_server_result.job_id 3UfM3zqJxVBC0ISsV65oXA _model_server_result.datetime_utc '2024-11-24 10:00:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x89 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":306}' # _entry.id 4X89 # _exptl.entry_id 4X89 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4X89 _cell.length_a 80 _cell.length_b 329.24 _cell.length_c 80.02 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X89 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA Tetrameric 4 author_and_software_defined_assembly 1 PISA Tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,U,V 1 1,2 C,D,M,N,O,P,Q,R,S,T,W,X 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -80 0 40.01 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 O N N ? 4 P N N ? 4 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 W O HOH . C HOH 428 1_555 T NA NA . D NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.956 ? metalc ? metalc2 W O HOH . C HOH 428 3_455 T NA NA . D NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.956 ? metalc ? metalc3 T NA NA . D NA 303 1_555 X O HOH . D HOH 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.961 ? metalc ? metalc4 T NA NA . D NA 303 1_555 X O HOH . D HOH 438 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.961 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4X89 _atom_sites.fract_transf_matrix[1][1] 0.0125 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003037 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012497 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 2CV A 1 301 300 2CV 2CV . F 3 1PE A 1 302 350 1PE 12P . G 4 NA A 1 303 401 NA NA . H 4 NA A 1 304 402 NA NA . I 4 NA A 1 305 403 NA NA . J 4 NA A 1 306 404 NA NA . K 2 2CV B 1 301 300 2CV 2CV . L 3 1PE B 1 302 350 1PE 12P . M 2 2CV C 1 301 300 2CV 2CV . N 3 1PE C 1 302 350 1PE 12P . O 4 NA C 1 303 401 NA NA . P 4 NA C 1 304 402 NA NA . Q 5 AG C 1 305 501 AG AG . R 2 2CV D 1 301 300 2CV 2CV . S 3 1PE D 1 302 350 1PE 12P . T 4 NA D 1 303 403 NA NA . U 6 HOH A 1 401 1 HOH HOH . U 6 HOH A 2 402 4 HOH HOH . U 6 HOH A 3 403 82 HOH HOH . U 6 HOH A 4 404 138 HOH HOH . U 6 HOH A 5 405 134 HOH HOH . U 6 HOH A 6 406 226 HOH HOH . U 6 HOH A 7 407 227 HOH HOH . U 6 HOH A 8 408 249 HOH HOH . U 6 HOH A 9 409 6 HOH HOH . U 6 HOH A 10 410 76 HOH HOH . U 6 HOH A 11 411 165 HOH HOH . U 6 HOH A 12 412 18 HOH HOH . U 6 HOH A 13 413 183 HOH HOH . U 6 HOH A 14 414 181 HOH HOH . U 6 HOH A 15 415 131 HOH HOH . U 6 HOH A 16 416 52 HOH HOH . U 6 HOH A 17 417 88 HOH HOH . U 6 HOH A 18 418 51 HOH HOH . U 6 HOH A 19 419 20 HOH HOH . U 6 HOH A 20 420 262 HOH HOH . U 6 HOH A 21 421 170 HOH HOH . U 6 HOH A 22 422 201 HOH HOH . U 6 HOH A 23 423 173 HOH HOH . U 6 HOH A 24 424 223 HOH HOH . U 6 HOH A 25 425 242 HOH HOH . U 6 HOH A 26 426 198 HOH HOH . U 6 HOH A 27 427 257 HOH HOH . U 6 HOH A 28 428 9 HOH HOH . U 6 HOH A 29 429 35 HOH HOH . U 6 HOH A 30 430 29 HOH HOH . U 6 HOH A 31 431 230 HOH HOH . U 6 HOH A 32 432 49 HOH HOH . U 6 HOH A 33 433 108 HOH HOH . U 6 HOH A 34 434 96 HOH HOH . U 6 HOH A 35 435 28 HOH HOH . U 6 HOH A 36 436 61 HOH HOH . U 6 HOH A 37 437 122 HOH HOH . U 6 HOH A 38 438 48 HOH HOH . U 6 HOH A 39 439 153 HOH HOH . U 6 HOH A 40 440 98 HOH HOH . U 6 HOH A 41 441 202 HOH HOH . U 6 HOH A 42 442 229 HOH HOH . U 6 HOH A 43 443 139 HOH HOH . U 6 HOH A 44 444 104 HOH HOH . U 6 HOH A 45 445 191 HOH HOH . U 6 HOH A 46 446 120 HOH HOH . U 6 HOH A 47 447 115 HOH HOH . U 6 HOH A 48 448 219 HOH HOH . U 6 HOH A 49 449 193 HOH HOH . U 6 HOH A 50 450 253 HOH HOH . U 6 HOH A 51 451 178 HOH HOH . U 6 HOH A 52 452 72 HOH HOH . U 6 HOH A 53 453 261 HOH HOH . U 6 HOH A 54 454 182 HOH HOH . U 6 HOH A 55 455 216 HOH HOH . U 6 HOH A 56 456 203 HOH HOH . V 6 HOH B 1 401 129 HOH HOH . V 6 HOH B 2 402 2 HOH HOH . V 6 HOH B 3 403 140 HOH HOH . V 6 HOH B 4 404 215 HOH HOH . V 6 HOH B 5 405 188 HOH HOH . V 6 HOH B 6 406 31 HOH HOH . V 6 HOH B 7 407 128 HOH HOH . V 6 HOH B 8 408 132 HOH HOH . V 6 HOH B 9 409 3 HOH HOH . V 6 HOH B 10 410 53 HOH HOH . V 6 HOH B 11 411 154 HOH HOH . V 6 HOH B 12 412 213 HOH HOH . V 6 HOH B 13 413 13 HOH HOH . V 6 HOH B 14 414 126 HOH HOH . V 6 HOH B 15 415 71 HOH HOH . V 6 HOH B 16 416 93 HOH HOH . V 6 HOH B 17 417 24 HOH HOH . V 6 HOH B 18 418 179 HOH HOH . V 6 HOH B 19 419 25 HOH HOH . V 6 HOH B 20 420 161 HOH HOH . V 6 HOH B 21 421 141 HOH HOH . V 6 HOH B 22 422 50 HOH HOH . V 6 HOH B 23 423 21 HOH HOH . V 6 HOH B 24 424 5 HOH HOH . V 6 HOH B 25 425 117 HOH HOH . V 6 HOH B 26 426 119 HOH HOH . V 6 HOH B 27 427 58 HOH HOH . V 6 HOH B 28 428 197 HOH HOH . V 6 HOH B 29 429 94 HOH HOH . V 6 HOH B 30 430 196 HOH HOH . V 6 HOH B 31 431 41 HOH HOH . V 6 HOH B 32 432 210 HOH HOH . V 6 HOH B 33 433 177 HOH HOH . V 6 HOH B 34 434 116 HOH HOH . V 6 HOH B 35 435 246 HOH HOH . V 6 HOH B 36 436 207 HOH HOH . V 6 HOH B 37 437 54 HOH HOH . V 6 HOH B 38 438 86 HOH HOH . V 6 HOH B 39 439 156 HOH HOH . V 6 HOH B 40 440 55 HOH HOH . V 6 HOH B 41 441 60 HOH HOH . V 6 HOH B 42 442 176 HOH HOH . V 6 HOH B 43 443 80 HOH HOH . V 6 HOH B 44 444 224 HOH HOH . V 6 HOH B 45 445 232 HOH HOH . V 6 HOH B 46 446 225 HOH HOH . V 6 HOH B 47 447 256 HOH HOH . V 6 HOH B 48 448 234 HOH HOH . V 6 HOH B 49 449 217 HOH HOH . V 6 HOH B 50 450 168 HOH HOH . V 6 HOH B 51 451 175 HOH HOH . V 6 HOH B 52 452 260 HOH HOH . V 6 HOH B 53 453 149 HOH HOH . V 6 HOH B 54 454 105 HOH HOH . V 6 HOH B 55 455 97 HOH HOH . V 6 HOH B 56 456 171 HOH HOH . V 6 HOH B 57 457 233 HOH HOH . V 6 HOH B 58 458 258 HOH HOH . V 6 HOH B 59 459 264 HOH HOH . V 6 HOH B 60 460 221 HOH HOH . V 6 HOH B 61 461 102 HOH HOH . W 6 HOH C 1 401 39 HOH HOH . W 6 HOH C 2 402 12 HOH HOH . W 6 HOH C 3 403 160 HOH HOH . W 6 HOH C 4 404 135 HOH HOH . W 6 HOH C 5 405 63 HOH HOH . W 6 HOH C 6 406 19 HOH HOH . W 6 HOH C 7 407 112 HOH HOH . W 6 HOH C 8 408 74 HOH HOH . W 6 HOH C 9 409 11 HOH HOH . W 6 HOH C 10 410 32 HOH HOH . W 6 HOH C 11 411 8 HOH HOH . W 6 HOH C 12 412 90 HOH HOH . W 6 HOH C 13 413 10 HOH HOH . W 6 HOH C 14 414 110 HOH HOH . W 6 HOH C 15 415 259 HOH HOH . W 6 HOH C 16 416 127 HOH HOH . W 6 HOH C 17 417 27 HOH HOH . W 6 HOH C 18 418 145 HOH HOH . W 6 HOH C 19 419 37 HOH HOH . W 6 HOH C 20 420 172 HOH HOH . W 6 HOH C 21 421 146 HOH HOH . W 6 HOH C 22 422 77 HOH HOH . W 6 HOH C 23 423 155 HOH HOH . W 6 HOH C 24 424 251 HOH HOH . W 6 HOH C 25 425 36 HOH HOH . W 6 HOH C 26 426 38 HOH HOH . W 6 HOH C 27 427 205 HOH HOH . W 6 HOH C 28 428 30 HOH HOH . W 6 HOH C 29 429 118 HOH HOH . W 6 HOH C 30 430 44 HOH HOH . W 6 HOH C 31 431 91 HOH HOH . W 6 HOH C 32 432 59 HOH HOH . W 6 HOH C 33 433 136 HOH HOH . W 6 HOH C 34 434 142 HOH HOH . W 6 HOH C 35 435 95 HOH HOH . W 6 HOH C 36 436 87 HOH HOH . W 6 HOH C 37 437 248 HOH HOH . W 6 HOH C 38 438 206 HOH HOH . W 6 HOH C 39 439 143 HOH HOH . W 6 HOH C 40 440 185 HOH HOH . W 6 HOH C 41 441 56 HOH HOH . W 6 HOH C 42 442 200 HOH HOH . W 6 HOH C 43 443 212 HOH HOH . W 6 HOH C 44 444 243 HOH HOH . W 6 HOH C 45 445 47 HOH HOH . W 6 HOH C 46 446 101 HOH HOH . W 6 HOH C 47 447 214 HOH HOH . W 6 HOH C 48 448 151 HOH HOH . W 6 HOH C 49 449 78 HOH HOH . W 6 HOH C 50 450 100 HOH HOH . W 6 HOH C 51 451 241 HOH HOH . W 6 HOH C 52 452 113 HOH HOH . W 6 HOH C 53 453 103 HOH HOH . W 6 HOH C 54 454 211 HOH HOH . W 6 HOH C 55 455 62 HOH HOH . W 6 HOH C 56 456 239 HOH HOH . W 6 HOH C 57 457 45 HOH HOH . W 6 HOH C 58 458 174 HOH HOH . W 6 HOH C 59 459 121 HOH HOH . W 6 HOH C 60 460 40 HOH HOH . W 6 HOH C 61 461 194 HOH HOH . W 6 HOH C 62 462 123 HOH HOH . W 6 HOH C 63 463 109 HOH HOH . W 6 HOH C 64 464 157 HOH HOH . W 6 HOH C 65 465 235 HOH HOH . W 6 HOH C 66 466 228 HOH HOH . W 6 HOH C 67 467 43 HOH HOH . W 6 HOH C 68 468 247 HOH HOH . W 6 HOH C 69 469 222 HOH HOH . W 6 HOH C 70 470 85 HOH HOH . X 6 HOH D 1 401 69 HOH HOH . X 6 HOH D 2 402 137 HOH HOH . X 6 HOH D 3 403 46 HOH HOH . X 6 HOH D 4 404 7 HOH HOH . X 6 HOH D 5 405 130 HOH HOH . X 6 HOH D 6 406 133 HOH HOH . X 6 HOH D 7 407 144 HOH HOH . X 6 HOH D 8 408 163 HOH HOH . X 6 HOH D 9 409 148 HOH HOH . X 6 HOH D 10 410 124 HOH HOH . X 6 HOH D 11 411 16 HOH HOH . X 6 HOH D 12 412 152 HOH HOH . X 6 HOH D 13 413 15 HOH HOH . X 6 HOH D 14 414 23 HOH HOH . X 6 HOH D 15 415 252 HOH HOH . X 6 HOH D 16 416 22 HOH HOH . X 6 HOH D 17 417 14 HOH HOH . X 6 HOH D 18 418 99 HOH HOH . X 6 HOH D 19 419 240 HOH HOH . X 6 HOH D 20 420 84 HOH HOH . X 6 HOH D 21 421 17 HOH HOH . X 6 HOH D 22 422 75 HOH HOH . X 6 HOH D 23 423 81 HOH HOH . X 6 HOH D 24 424 266 HOH HOH . X 6 HOH D 25 425 199 HOH HOH . X 6 HOH D 26 426 147 HOH HOH . X 6 HOH D 27 427 83 HOH HOH . X 6 HOH D 28 428 204 HOH HOH . X 6 HOH D 29 429 66 HOH HOH . X 6 HOH D 30 430 79 HOH HOH . X 6 HOH D 31 431 34 HOH HOH . X 6 HOH D 32 432 70 HOH HOH . X 6 HOH D 33 433 189 HOH HOH . X 6 HOH D 34 434 184 HOH HOH . X 6 HOH D 35 435 190 HOH HOH . X 6 HOH D 36 436 106 HOH HOH . X 6 HOH D 37 437 114 HOH HOH . X 6 HOH D 38 438 33 HOH HOH . X 6 HOH D 39 439 231 HOH HOH . X 6 HOH D 40 440 267 HOH HOH . X 6 HOH D 41 441 169 HOH HOH . X 6 HOH D 42 442 26 HOH HOH . X 6 HOH D 43 443 89 HOH HOH . X 6 HOH D 44 444 150 HOH HOH . X 6 HOH D 45 445 164 HOH HOH . X 6 HOH D 46 446 250 HOH HOH . X 6 HOH D 47 447 64 HOH HOH . X 6 HOH D 48 448 158 HOH HOH . X 6 HOH D 49 449 238 HOH HOH . X 6 HOH D 50 450 186 HOH HOH . X 6 HOH D 51 451 263 HOH HOH . X 6 HOH D 52 452 111 HOH HOH . X 6 HOH D 53 453 68 HOH HOH . X 6 HOH D 54 454 65 HOH HOH . X 6 HOH D 55 455 265 HOH HOH . X 6 HOH D 56 456 244 HOH HOH . X 6 HOH D 57 457 92 HOH HOH . X 6 HOH D 58 458 192 HOH HOH . X 6 HOH D 59 459 255 HOH HOH . X 6 HOH D 60 460 195 HOH HOH . X 6 HOH D 61 461 187 HOH HOH . X 6 HOH D 62 462 159 HOH HOH . X 6 HOH D 63 463 162 HOH HOH . X 6 HOH D 64 464 67 HOH HOH . X 6 HOH D 65 465 218 HOH HOH . X 6 HOH D 66 466 167 HOH HOH . X 6 HOH D 67 467 237 HOH HOH . X 6 HOH D 68 468 57 HOH HOH . X 6 HOH D 69 469 254 HOH HOH . X 6 HOH D 70 470 220 HOH HOH . X 6 HOH D 71 471 236 HOH HOH . X 6 HOH D 72 472 107 HOH HOH . X 6 HOH D 73 473 208 HOH HOH . X 6 HOH D 74 474 180 HOH HOH . X 6 HOH D 75 475 42 HOH HOH . X 6 HOH D 76 476 166 HOH HOH . X 6 HOH D 77 477 209 HOH HOH . X 6 HOH D 78 478 245 HOH HOH . X 6 HOH D 79 479 73 HOH HOH . X 6 HOH D 80 480 125 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 4 _atom_site.Cartn_x -40 _atom_site.Cartn_y -60.124 _atom_site.Cartn_z 20.005 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 90.15 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 306 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #