data_4X8A # _model_server_result.job_id qX3M1adl52iIew9xnwmBjw _model_server_result.datetime_utc '2025-04-03 13:56:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x8a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":303}' # _entry.id 4X8A # _exptl.entry_id 4X8A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.488 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NONAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4X8A _cell.length_a 80.09 _cell.length_b 332.35 _cell.length_c 80.09 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X8A _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,R,S 1 1,2 C,D,M,N,O,P,Q,T,U 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -80.09 0 40.045 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 L N N ? 3 Q N N # _chem_comp.formula 'C18 H38 O10' _chem_comp.formula_weight 414.488 _chem_comp.id 2PE _chem_comp.mon_nstd_flag . _chem_comp.name 'NONAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 2PE sing 63 n n O1 HO1 2PE sing 64 n n C2 C3 2PE sing 65 n n C2 H21 2PE sing 66 n n C2 H22 2PE sing 67 n n C3 O4 2PE sing 68 n n C3 H31 2PE sing 69 n n C3 H32 2PE sing 70 n n O4 C5 2PE sing 71 n n C5 C6 2PE sing 72 n n C5 H51 2PE sing 73 n n C5 H52 2PE sing 74 n n C6 O7 2PE sing 75 n n C6 H61 2PE sing 76 n n C6 H62 2PE sing 77 n n O7 C8 2PE sing 78 n n C8 C9 2PE sing 79 n n C8 H81 2PE sing 80 n n C8 H82 2PE sing 81 n n C9 O10 2PE sing 82 n n C9 H91 2PE sing 83 n n C9 H92 2PE sing 84 n n O10 C11 2PE sing 85 n n C11 C12 2PE sing 86 n n C11 H111 2PE sing 87 n n C11 H112 2PE sing 88 n n C12 O13 2PE sing 89 n n C12 H121 2PE sing 90 n n C12 H122 2PE sing 91 n n O13 C14 2PE sing 92 n n C14 C15 2PE sing 93 n n C14 H141 2PE sing 94 n n C14 H142 2PE sing 95 n n C15 O16 2PE sing 96 n n C15 H151 2PE sing 97 n n C15 H152 2PE sing 98 n n O16 C17 2PE sing 99 n n C17 C18 2PE sing 100 n n C17 H171 2PE sing 101 n n C17 H172 2PE sing 102 n n C18 O19 2PE sing 103 n n C18 H181 2PE sing 104 n n C18 H182 2PE sing 105 n n O19 C20 2PE sing 106 n n C20 C21 2PE sing 107 n n C20 H201 2PE sing 108 n n C20 H202 2PE sing 109 n n C21 O22 2PE sing 110 n n C21 H211 2PE sing 111 n n C21 H212 2PE sing 112 n n O22 C23 2PE sing 113 n n C23 C24 2PE sing 114 n n C23 H231 2PE sing 115 n n C23 H232 2PE sing 116 n n C24 O25 2PE sing 117 n n C24 H241 2PE sing 118 n n C24 H242 2PE sing 119 n n O25 C26 2PE sing 120 n n C26 C27 2PE sing 121 n n C26 H261 2PE sing 122 n n C26 H262 2PE sing 123 n n C27 O28 2PE sing 124 n n C27 H271 2PE sing 125 n n C27 H272 2PE sing 126 n n O28 HO2 2PE sing 127 n n # _atom_sites.entry_id 4X8A _atom_sites.fract_transf_matrix[1][1] 0.012486 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003009 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012486 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 2CV A 1 301 300 2CV 2CV . F 3 2PE A 1 302 350 2PE 12P . G 4 NA A 1 303 401 NA NA . H 4 NA A 1 304 402 NA NA . I 4 NA A 1 305 403 NA NA . J 2 2CV B 1 301 300 2CV 2CV . K 2 2CV B 1 302 301 2CV 2CV . L 3 2PE B 1 303 350 2PE 12P . M 2 2CV C 1 301 300 2CV 2CV . N 4 NA C 1 302 401 NA NA . O 4 NA C 1 303 402 NA NA . P 2 2CV D 1 301 300 2CV 2CV . Q 3 2PE D 1 302 350 2PE 12P . R 5 HOH A 1 401 16 HOH HOH . R 5 HOH A 2 402 3 HOH HOH . R 5 HOH A 3 403 4 HOH HOH . R 5 HOH A 4 404 7 HOH HOH . R 5 HOH A 5 405 10 HOH HOH . S 5 HOH B 1 401 17 HOH HOH . S 5 HOH B 2 402 1 HOH HOH . S 5 HOH B 3 403 5 HOH HOH . S 5 HOH B 4 404 6 HOH HOH . S 5 HOH B 5 405 2 HOH HOH . T 5 HOH C 1 401 12 HOH HOH . T 5 HOH C 2 402 15 HOH HOH . T 5 HOH C 3 403 11 HOH HOH . T 5 HOH C 4 404 8 HOH HOH . U 5 HOH D 1 401 13 HOH HOH . U 5 HOH D 2 402 14 HOH HOH . U 5 HOH D 3 403 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 2PE . . . L 3 -31.376 -60.14 38.603 1 56.89 ? O4 2PE 303 B 1 HETATM 2 C C5 2PE . . . L 3 -32.641 -60.46 39.154 1 57.07 ? C5 2PE 303 B 1 HETATM 3 C C6 2PE . . . L 3 -32.458 -61.069 40.5 1 59.36 ? C6 2PE 303 B 1 HETATM 4 O O7 2PE . . . L 3 -33.712 -61.484 41.025 1 61.88 ? O7 2PE 303 B 1 HETATM 5 C C8 2PE . . . L 3 -33.936 -61.057 42.364 1 62.48 ? C8 2PE 303 B 1 HETATM 6 C C9 2PE . . . L 3 -34.408 -62.202 43.201 1 63.13 ? C9 2PE 303 B 1 HETATM 7 O O10 2PE . . . L 3 -33.425 -63.232 43.241 1 64.04 ? O10 2PE 303 B 1 HETATM 8 C C11 2PE . . . L 3 -33.695 -64.214 44.235 1 63.75 ? C11 2PE 303 B 1 HETATM 9 C C12 2PE . . . L 3 -33.487 -65.587 43.687 1 63.09 ? C12 2PE 303 B 1 HETATM 10 O O13 2PE . . . L 3 -34.37 -66.501 44.33 1 62.58 ? O13 2PE 303 B 1 HETATM 11 C C14 2PE . . . L 3 -33.914 -67.849 44.311 1 61.72 ? C14 2PE 303 B 1 HETATM 12 C C15 2PE . . . L 3 -34.781 -68.692 43.417 1 60.79 ? C15 2PE 303 B 1 HETATM 13 O O16 2PE . . . L 3 -34.33 -70.042 43.359 1 59.95 ? O16 2PE 303 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 13 #