data_4X8A # _model_server_result.job_id rOVLSwQCDdldkfDbO_X8pw _model_server_result.datetime_utc '2025-04-03 13:34:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x8a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":305}' # _entry.id 4X8A # _exptl.entry_id 4X8A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4X8A _cell.length_a 80.09 _cell.length_b 332.35 _cell.length_c 80.09 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X8A _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,R,S 1 1,2 C,D,M,N,O,P,Q,T,U 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -80.09 0 40.045 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 N N N ? 4 O N N # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4X8A _atom_sites.fract_transf_matrix[1][1] 0.012486 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003009 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012486 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 2CV A 1 301 300 2CV 2CV . F 3 2PE A 1 302 350 2PE 12P . G 4 NA A 1 303 401 NA NA . H 4 NA A 1 304 402 NA NA . I 4 NA A 1 305 403 NA NA . J 2 2CV B 1 301 300 2CV 2CV . K 2 2CV B 1 302 301 2CV 2CV . L 3 2PE B 1 303 350 2PE 12P . M 2 2CV C 1 301 300 2CV 2CV . N 4 NA C 1 302 401 NA NA . O 4 NA C 1 303 402 NA NA . P 2 2CV D 1 301 300 2CV 2CV . Q 3 2PE D 1 302 350 2PE 12P . R 5 HOH A 1 401 16 HOH HOH . R 5 HOH A 2 402 3 HOH HOH . R 5 HOH A 3 403 4 HOH HOH . R 5 HOH A 4 404 7 HOH HOH . R 5 HOH A 5 405 10 HOH HOH . S 5 HOH B 1 401 17 HOH HOH . S 5 HOH B 2 402 1 HOH HOH . S 5 HOH B 3 403 5 HOH HOH . S 5 HOH B 4 404 6 HOH HOH . S 5 HOH B 5 405 2 HOH HOH . T 5 HOH C 1 401 12 HOH HOH . T 5 HOH C 2 402 15 HOH HOH . T 5 HOH C 3 403 11 HOH HOH . T 5 HOH C 4 404 8 HOH HOH . U 5 HOH D 1 401 13 HOH HOH . U 5 HOH D 2 402 14 HOH HOH . U 5 HOH D 3 403 9 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 4 _atom_site.Cartn_x -40.029 _atom_site.Cartn_y -61.394 _atom_site.Cartn_z 20.024 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 30.35 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 305 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #