data_4X8V # _model_server_result.job_id zrWIZRRSsgQYj8hGnFuDnA _model_server_result.datetime_utc '2024-11-22 07:29:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x8v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":307}' # _entry.id 4X8V # _exptl.entry_id 4X8V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4X8V _cell.length_a 95.3 _cell.length_b 95.3 _cell.length_c 116.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X8V _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 H CYS 22 1_555 A SG CYS 12 H CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf2 A SG CYS 26 H CYS 42 1_555 A SG CYS 42 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf3 A SG CYS 110 H CYS 122 1_555 B SG CYS 46 L CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 A SG CYS 158 H CYS 168 1_555 A SG CYS 177 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf5 A SG CYS 188 H CYS 191 1_555 A SG CYS 216 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf6 B SG CYS 2 L CYS 91 1_555 B SG CYS 13 L CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf7 B SG CYS 9 L CYS 98 1_555 B SG CYS 23 L CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf8 B SG CYS 25 L CYS 114 1_555 B SG CYS 38 L CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc1 A OE1 GLU 58 H GLU 70 1_555 D CA CA . H CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc2 A O ASP 60 H ASP 72 1_555 D CA CA . H CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc3 A O GLU 63 H GLU 75 1_555 D CA CA . H CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc4 A OE1 GLU 68 H GLU 80 1_555 D CA CA . H CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc5 D CA CA . H CA 302 1_555 J O HOH . H HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 220 n n C1 C2 GOL sing 221 n n C1 H11 GOL sing 222 n n C1 H12 GOL sing 223 n n O1 HO1 GOL sing 224 n n C2 O2 GOL sing 225 n n C2 C3 GOL sing 226 n n C2 H2 GOL sing 227 n n O2 HO2 GOL sing 228 n n C3 O3 GOL sing 229 n n C3 H31 GOL sing 230 n n C3 H32 GOL sing 231 n n O3 HO3 GOL sing 232 n n # _atom_sites.entry_id 4X8V _atom_sites.fract_transf_matrix[1][1] 0.010493 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010493 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008598 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 3Z9 H 1 301 1 3Z9 LG1 . D 4 CA H 1 302 401 CA CA . E 5 SO4 H 1 303 402 SO4 SO4 . F 5 SO4 H 1 304 403 SO4 SO4 . G 5 SO4 H 1 305 405 SO4 SO4 . H 6 GOL H 1 306 407 GOL GOL . I 6 GOL H 1 307 408 GOL GOL . J 7 HOH H 1 401 55 HOH HOH . J 7 HOH H 2 402 70 HOH HOH . J 7 HOH H 3 403 43 HOH HOH . J 7 HOH H 4 404 52 HOH HOH . J 7 HOH H 5 405 97 HOH HOH . J 7 HOH H 6 406 93 HOH HOH . J 7 HOH H 7 407 126 HOH HOH . J 7 HOH H 8 408 94 HOH HOH . J 7 HOH H 9 409 114 HOH HOH . J 7 HOH H 10 410 96 HOH HOH . J 7 HOH H 11 411 77 HOH HOH . J 7 HOH H 12 412 26 HOH HOH . J 7 HOH H 13 413 2 HOH HOH . J 7 HOH H 14 414 23 HOH HOH . J 7 HOH H 15 415 87 HOH HOH . J 7 HOH H 16 416 37 HOH HOH . J 7 HOH H 17 417 104 HOH HOH . J 7 HOH H 18 418 107 HOH HOH . J 7 HOH H 19 419 110 HOH HOH . J 7 HOH H 20 420 102 HOH HOH . J 7 HOH H 21 421 103 HOH HOH . J 7 HOH H 22 422 3 HOH HOH . J 7 HOH H 23 423 137 HOH HOH . J 7 HOH H 24 424 100 HOH HOH . J 7 HOH H 25 425 72 HOH HOH . J 7 HOH H 26 426 1 HOH HOH . J 7 HOH H 27 427 4 HOH HOH . J 7 HOH H 28 428 5 HOH HOH . J 7 HOH H 29 429 6 HOH HOH . J 7 HOH H 30 430 7 HOH HOH . J 7 HOH H 31 431 9 HOH HOH . J 7 HOH H 32 432 10 HOH HOH . J 7 HOH H 33 433 11 HOH HOH . J 7 HOH H 34 434 12 HOH HOH . J 7 HOH H 35 435 13 HOH HOH . J 7 HOH H 36 436 14 HOH HOH . J 7 HOH H 37 437 15 HOH HOH . J 7 HOH H 38 438 16 HOH HOH . J 7 HOH H 39 439 17 HOH HOH . J 7 HOH H 40 440 18 HOH HOH . J 7 HOH H 41 441 20 HOH HOH . J 7 HOH H 42 442 21 HOH HOH . J 7 HOH H 43 443 22 HOH HOH . J 7 HOH H 44 444 24 HOH HOH . J 7 HOH H 45 445 25 HOH HOH . J 7 HOH H 46 446 27 HOH HOH . J 7 HOH H 47 447 29 HOH HOH . J 7 HOH H 48 448 30 HOH HOH . J 7 HOH H 49 449 31 HOH HOH . J 7 HOH H 50 450 32 HOH HOH . J 7 HOH H 51 451 33 HOH HOH . J 7 HOH H 52 452 34 HOH HOH . J 7 HOH H 53 453 35 HOH HOH . J 7 HOH H 54 454 36 HOH HOH . J 7 HOH H 55 455 38 HOH HOH . J 7 HOH H 56 456 39 HOH HOH . J 7 HOH H 57 457 40 HOH HOH . J 7 HOH H 58 458 41 HOH HOH . J 7 HOH H 59 459 44 HOH HOH . J 7 HOH H 60 460 45 HOH HOH . J 7 HOH H 61 461 46 HOH HOH . J 7 HOH H 62 462 47 HOH HOH . J 7 HOH H 63 463 48 HOH HOH . J 7 HOH H 64 464 49 HOH HOH . J 7 HOH H 65 465 50 HOH HOH . J 7 HOH H 66 466 51 HOH HOH . J 7 HOH H 67 467 54 HOH HOH . J 7 HOH H 68 468 56 HOH HOH . J 7 HOH H 69 469 57 HOH HOH . J 7 HOH H 70 470 59 HOH HOH . J 7 HOH H 71 471 60 HOH HOH . J 7 HOH H 72 472 62 HOH HOH . J 7 HOH H 73 473 64 HOH HOH . J 7 HOH H 74 474 65 HOH HOH . J 7 HOH H 75 475 66 HOH HOH . J 7 HOH H 76 476 67 HOH HOH . J 7 HOH H 77 477 69 HOH HOH . J 7 HOH H 78 478 71 HOH HOH . J 7 HOH H 79 479 73 HOH HOH . J 7 HOH H 80 480 76 HOH HOH . J 7 HOH H 81 481 78 HOH HOH . J 7 HOH H 82 482 79 HOH HOH . J 7 HOH H 83 483 80 HOH HOH . J 7 HOH H 84 484 81 HOH HOH . J 7 HOH H 85 485 82 HOH HOH . J 7 HOH H 86 486 85 HOH HOH . J 7 HOH H 87 487 86 HOH HOH . J 7 HOH H 88 488 89 HOH HOH . J 7 HOH H 89 489 90 HOH HOH . J 7 HOH H 90 490 91 HOH HOH . J 7 HOH H 91 491 95 HOH HOH . J 7 HOH H 92 492 98 HOH HOH . J 7 HOH H 93 493 106 HOH HOH . J 7 HOH H 94 494 108 HOH HOH . J 7 HOH H 95 495 109 HOH HOH . J 7 HOH H 96 496 112 HOH HOH . J 7 HOH H 97 497 113 HOH HOH . J 7 HOH H 98 498 116 HOH HOH . J 7 HOH H 99 499 117 HOH HOH . J 7 HOH H 100 500 118 HOH HOH . J 7 HOH H 101 501 120 HOH HOH . J 7 HOH H 102 502 121 HOH HOH . J 7 HOH H 103 503 122 HOH HOH . J 7 HOH H 104 504 123 HOH HOH . J 7 HOH H 105 505 124 HOH HOH . J 7 HOH H 106 506 125 HOH HOH . J 7 HOH H 107 507 127 HOH HOH . J 7 HOH H 108 508 129 HOH HOH . J 7 HOH H 109 509 131 HOH HOH . J 7 HOH H 110 510 132 HOH HOH . J 7 HOH H 111 511 133 HOH HOH . J 7 HOH H 112 512 134 HOH HOH . J 7 HOH H 113 513 135 HOH HOH . J 7 HOH H 114 514 136 HOH HOH . J 7 HOH H 115 515 138 HOH HOH . J 7 HOH H 116 516 139 HOH HOH . K 7 HOH L 1 201 88 HOH HOH . K 7 HOH L 2 202 92 HOH HOH . K 7 HOH L 3 203 8 HOH HOH . K 7 HOH L 4 204 74 HOH HOH . K 7 HOH L 5 205 68 HOH HOH . K 7 HOH L 6 206 19 HOH HOH . K 7 HOH L 7 207 28 HOH HOH . K 7 HOH L 8 208 42 HOH HOH . K 7 HOH L 9 209 53 HOH HOH . K 7 HOH L 10 210 58 HOH HOH . K 7 HOH L 11 211 61 HOH HOH . K 7 HOH L 12 212 63 HOH HOH . K 7 HOH L 13 213 75 HOH HOH . K 7 HOH L 14 214 83 HOH HOH . K 7 HOH L 15 215 84 HOH HOH . K 7 HOH L 16 216 99 HOH HOH . K 7 HOH L 17 217 101 HOH HOH . K 7 HOH L 18 218 105 HOH HOH . K 7 HOH L 19 219 111 HOH HOH . K 7 HOH L 20 220 115 HOH HOH . K 7 HOH L 21 221 119 HOH HOH . K 7 HOH L 22 222 128 HOH HOH . K 7 HOH L 23 223 130 HOH HOH . K 7 HOH L 24 224 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 6 26.929 23.24 26.894 1 63.04 ? C1 GOL 307 H 1 HETATM 2 O O1 GOL . . . I 6 27.367 24.563 27.171 1 62.17 ? O1 GOL 307 H 1 HETATM 3 C C2 GOL . . . I 6 26.884 22.964 25.408 1 63.68 ? C2 GOL 307 H 1 HETATM 4 O O2 GOL . . . I 6 26.651 21.565 25.201 1 63.96 ? O2 GOL 307 H 1 HETATM 5 C C3 GOL . . . I 6 25.789 23.778 24.752 1 63.36 ? C3 GOL 307 H 1 HETATM 6 O O3 GOL . . . I 6 25.09 23.045 23.743 1 62.45 ? O3 GOL 307 H 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #