data_4X8W
#
_model_server_result.job_id            -m7RYpIEtVWLqRl0fF7uXw 
_model_server_result.datetime_utc      '2024-11-05 00:28:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4x8w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":501}' 
#
_entry.id    4X8W 
#
_exptl.entry_id    4X8W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4X8W 
_cell.length_a            66.018 
_cell.length_b            112.97 
_cell.length_c            114.049 
_cell.Z_PDB               28 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4X8W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 software_defined_assembly 1 
PISA trimeric 3 software_defined_assembly 2 
PISA monomeric 1 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,D,E,I,J,K,M,N 1 1 
C,F,G,L,O,P 2 1 
H,Q 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             I 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ILE 7 A ILE 395 1_555 A N MLY 8 A MLY 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale2 A C MLY 8 A MLY 396 1_555 A N LEU 9 A LEU 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale3 A C GLU 28 A GLU 416 1_555 A N MLY 29 A MLY 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 A C MLY 29 A MLY 417 1_555 A N THR 30 A THR 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale5 A C LEU 71 A LEU 459 1_555 A N MLY 72 A MLY 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale6 A C MLY 72 A MLY 460 1_555 A N ILE 73 A ILE 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale7 B C ILE 7 B ILE 395 1_555 B N MLY 8 B MLY 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale8 B C MLY 8 B MLY 396 1_555 B N LEU 9 B LEU 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale9 B C GLU 28 B GLU 416 1_555 B N MLY 29 B MLY 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale10 B C MLY 29 B MLY 417 1_555 B N THR 30 B THR 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale11 B C LEU 71 B LEU 459 1_555 B N MLY 72 B MLY 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale12 B C MLY 72 B MLY 460 1_555 B N ILE 73 B ILE 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale13 C C ILE 7 C ILE 395 1_555 C N MLY 8 C MLY 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale14 C C MLY 8 C MLY 396 1_555 C N LEU 9 C LEU 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale15 C C GLU 28 C GLU 416 1_555 C N MLY 29 C MLY 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale16 C C MLY 29 C MLY 417 1_555 C N THR 30 C THR 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale17 C C LEU 71 C LEU 459 1_555 C N MLY 72 C MLY 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale18 C C MLY 72 C MLY 460 1_555 C N ILE 73 C ILE 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale19 D C ILE 7 D ILE 395 1_555 D N MLY 8 D MLY 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale20 D C MLY 8 D MLY 396 1_555 D N LEU 9 D LEU 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale21 D C GLU 28 D GLU 416 1_555 D N MLY 29 D MLY 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale22 D C MLY 29 D MLY 417 1_555 D N THR 30 D THR 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale23 D C LEU 71 D LEU 459 1_555 D N MLY 72 D MLY 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale24 D C MLY 72 D MLY 460 1_555 D N ILE 73 D ILE 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale25 E C ILE 7 E ILE 395 1_555 E N MLY 8 E MLY 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale26 E C MLY 8 E MLY 396 1_555 E N LEU 9 E LEU 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale27 E C GLU 28 E GLU 416 1_555 E N MLY 29 E MLY 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale28 E C MLY 29 E MLY 417 1_555 E N THR 30 E THR 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale29 E C LEU 71 E LEU 459 1_555 E N MLY 72 E MLY 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale30 E C MLY 72 E MLY 460 1_555 E N ILE 73 E ILE 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale31 F C LEU 71 F LEU 459 1_555 F N MLY 72 F MLY 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale32 F C MLY 72 F MLY 460 1_555 F N ILE 73 F ILE 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale33 G C ILE 7 G ILE 395 1_555 G N MLY 8 G MLY 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale34 G C MLY 8 G MLY 396 1_555 G N LEU 9 G LEU 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale35 G C GLU 28 G GLU 416 1_555 G N MLY 29 G MLY 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale36 G C MLY 29 G MLY 417 1_555 G N THR 30 G THR 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
_atom_sites.entry_id                     4X8W 
_atom_sites.fract_transf_matrix[1][1]    0.015147 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008852 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008768 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 GOL A 1 501 1 GOL GOL . 
J 4 HOH A 1 601 52 HOH HOH . 
J 4 HOH A 2 602 42 HOH HOH . 
J 4 HOH A 3 603 3 HOH HOH . 
J 4 HOH A 4 604 2 HOH HOH . 
J 4 HOH A 5 605 40 HOH HOH . 
J 4 HOH A 6 606 41 HOH HOH . 
J 4 HOH A 7 607 30 HOH HOH . 
J 4 HOH A 8 608 37 HOH HOH . 
J 4 HOH A 9 609 43 HOH HOH . 
J 4 HOH A 10 610 27 HOH HOH . 
J 4 HOH A 11 611 38 HOH HOH . 
J 4 HOH A 12 612 32 HOH HOH . 
J 4 HOH A 13 613 59 HOH HOH . 
J 4 HOH A 14 614 54 HOH HOH . 
J 4 HOH A 15 615 63 HOH HOH . 
K 4 HOH B 1 501 13 HOH HOH . 
K 4 HOH B 2 502 31 HOH HOH . 
K 4 HOH B 3 503 55 HOH HOH . 
K 4 HOH B 4 504 8 HOH HOH . 
K 4 HOH B 5 505 45 HOH HOH . 
K 4 HOH B 6 506 36 HOH HOH . 
K 4 HOH B 7 507 65 HOH HOH . 
L 4 HOH C 1 501 22 HOH HOH . 
L 4 HOH C 2 502 48 HOH HOH . 
L 4 HOH C 3 503 9 HOH HOH . 
L 4 HOH C 4 504 1 HOH HOH . 
L 4 HOH C 5 505 17 HOH HOH . 
L 4 HOH C 6 506 24 HOH HOH . 
L 4 HOH C 7 507 25 HOH HOH . 
L 4 HOH C 8 508 44 HOH HOH . 
L 4 HOH C 9 509 47 HOH HOH . 
L 4 HOH C 10 510 19 HOH HOH . 
L 4 HOH C 11 511 21 HOH HOH . 
L 4 HOH C 12 512 53 HOH HOH . 
L 4 HOH C 13 513 51 HOH HOH . 
L 4 HOH C 14 514 33 HOH HOH . 
L 4 HOH C 15 515 66 HOH HOH . 
L 4 HOH C 16 516 64 HOH HOH . 
L 4 HOH C 17 517 23 HOH HOH . 
L 4 HOH C 18 518 34 HOH HOH . 
M 4 HOH D 1 501 16 HOH HOH . 
M 4 HOH D 2 502 11 HOH HOH . 
M 4 HOH D 3 503 6 HOH HOH . 
M 4 HOH D 4 504 56 HOH HOH . 
M 4 HOH D 5 505 28 HOH HOH . 
M 4 HOH D 6 506 49 HOH HOH . 
M 4 HOH D 7 507 12 HOH HOH . 
M 4 HOH D 8 508 50 HOH HOH . 
N 4 HOH E 1 501 7 HOH HOH . 
N 4 HOH E 2 502 5 HOH HOH . 
N 4 HOH E 3 503 35 HOH HOH . 
N 4 HOH E 4 504 57 HOH HOH . 
N 4 HOH E 5 505 67 HOH HOH . 
O 4 HOH F 1 501 10 HOH HOH . 
O 4 HOH F 2 502 4 HOH HOH . 
O 4 HOH F 3 503 15 HOH HOH . 
O 4 HOH F 4 504 18 HOH HOH . 
O 4 HOH F 5 505 20 HOH HOH . 
O 4 HOH F 6 506 39 HOH HOH . 
P 4 HOH G 1 501 14 HOH HOH . 
P 4 HOH G 2 502 58 HOH HOH . 
P 4 HOH G 3 503 26 HOH HOH . 
P 4 HOH G 4 504 60 HOH HOH . 
P 4 HOH G 5 505 61 HOH HOH . 
P 4 HOH G 6 506 29 HOH HOH . 
Q 4 HOH H 1 401 62 HOH HOH . 
Q 4 HOH H 2 402 46 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 3 -14.313 22.362 34.595 1 78.31 ? C1 GOL 501 A 1 
HETATM 2 O O1 GOL . . . I 3 -13.217 22.614 33.741 1 83.1 ? O1 GOL 501 A 1 
HETATM 3 C C2 GOL . . . I 3 -13.882 21.486 35.768 1 75.44 ? C2 GOL 501 A 1 
HETATM 4 O O2 GOL . . . I 3 -14.741 21.695 36.87 1 70.15 ? O2 GOL 501 A 1 
HETATM 5 C C3 GOL . . . I 3 -12.443 21.814 36.151 1 83.83 ? C3 GOL 501 A 1 
HETATM 6 O O3 GOL . . . I 3 -12.361 23.078 36.775 1 84.05 ? O3 GOL 501 A 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#