data_4X93
#
_model_server_result.job_id            g0MfBhyKeF-MmYvA9xNNJg 
_model_server_result.datetime_utc      '2024-11-13 01:09:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4x93 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    4X93 
#
_exptl.entry_id    4X93 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4X93 
_cell.length_a            86.82 
_cell.length_b            86.82 
_cell.length_c            365.848 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4X93 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,O 1 1 
B,H,I,J,K,L,M,N,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 33 A CYS 32 1_555 A SG CYS 57 A CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf2 B SG CYS 33 B CYS 32 1_555 B SG CYS 57 B CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
covale ? covale1 A ND2 ASN 67 A ASN 66 1_555 C C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale2 A ND2 ASN 241 A ASN 240 1_555 D C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale3 A ND2 ASN 257 A ASN 256 1_555 E C1 NAG . A NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale4 A ND2 ASN 366 A ASN 365 1_555 F C1 NAG . A NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale5 B ND2 ASN 67 B ASN 66 1_555 H C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale6 B ND2 ASN 241 B ASN 240 1_555 I C1 NAG . B NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
covale ? covale7 B ND2 ASN 257 B ASN 256 1_555 J C1 NAG . B NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale8 B ND2 ASN 366 B ASN 365 1_555 K C1 NAG . B NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 270 n n 
C1 O1 NAG sing 271 n n 
C1 O5 NAG sing 272 n n 
C1 H1 NAG sing 273 n n 
C2 C3 NAG sing 274 n n 
C2 N2 NAG sing 275 n n 
C2 H2 NAG sing 276 n n 
C3 C4 NAG sing 277 n n 
C3 O3 NAG sing 278 n n 
C3 H3 NAG sing 279 n n 
C4 C5 NAG sing 280 n n 
C4 O4 NAG sing 281 n n 
C4 H4 NAG sing 282 n n 
C5 C6 NAG sing 283 n n 
C5 O5 NAG sing 284 n n 
C5 H5 NAG sing 285 n n 
C6 O6 NAG sing 286 n n 
C6 H61 NAG sing 287 n n 
C6 H62 NAG sing 288 n n 
C7 C8 NAG sing 289 n n 
C7 N2 NAG sing 290 n n 
C7 O7 NAG doub 291 n n 
C8 H81 NAG sing 292 n n 
C8 H82 NAG sing 293 n n 
C8 H83 NAG sing 294 n n 
N2 HN2 NAG sing 295 n n 
O1 HO1 NAG sing 296 n n 
O3 HO3 NAG sing 297 n n 
O4 HO4 NAG sing 298 n n 
O6 HO6 NAG sing 299 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4X93 
_atom_sites.fract_transf_matrix[1][1]    0.011518 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011518 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002733 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 401 380 NAG NAG . 
D 2 NAG A 1 402 381 NAG NAG . 
E 2 NAG A 1 403 382 NAG NAG . 
F 2 NAG A 1 404 383 NAG NAG . 
G 3 EPE A 1 405 385 EPE EPE . 
H 2 NAG B 1 401 380 NAG NAG . 
I 2 NAG B 1 402 381 NAG NAG . 
J 2 NAG B 1 403 382 NAG NAG . 
K 2 NAG B 1 404 383 NAG NAG . 
L 3 EPE B 1 405 385 EPE EPE . 
M 4 PEG B 1 406 391 PEG PEG . 
N 5 PE8 B 1 407 397 PE8 PE8 . 
O 6 HOH A 1 501 39 HOH HOH . 
O 6 HOH A 2 502 38 HOH HOH . 
O 6 HOH A 3 503 87 HOH HOH . 
O 6 HOH A 4 504 64 HOH HOH . 
O 6 HOH A 5 505 1 HOH HOH . 
O 6 HOH A 6 506 2 HOH HOH . 
O 6 HOH A 7 507 3 HOH HOH . 
O 6 HOH A 8 508 4 HOH HOH . 
O 6 HOH A 9 509 5 HOH HOH . 
O 6 HOH A 10 510 6 HOH HOH . 
O 6 HOH A 11 511 8 HOH HOH . 
O 6 HOH A 12 512 9 HOH HOH . 
O 6 HOH A 13 513 10 HOH HOH . 
O 6 HOH A 14 514 11 HOH HOH . 
O 6 HOH A 15 515 13 HOH HOH . 
O 6 HOH A 16 516 14 HOH HOH . 
O 6 HOH A 17 517 16 HOH HOH . 
O 6 HOH A 18 518 17 HOH HOH . 
O 6 HOH A 19 519 20 HOH HOH . 
O 6 HOH A 20 520 23 HOH HOH . 
O 6 HOH A 21 521 29 HOH HOH . 
O 6 HOH A 22 522 32 HOH HOH . 
O 6 HOH A 23 523 41 HOH HOH . 
O 6 HOH A 24 524 42 HOH HOH . 
O 6 HOH A 25 525 44 HOH HOH . 
O 6 HOH A 26 526 46 HOH HOH . 
O 6 HOH A 27 527 47 HOH HOH . 
O 6 HOH A 28 528 49 HOH HOH . 
O 6 HOH A 29 529 50 HOH HOH . 
O 6 HOH A 30 530 53 HOH HOH . 
O 6 HOH A 31 531 56 HOH HOH . 
O 6 HOH A 32 532 59 HOH HOH . 
O 6 HOH A 33 533 60 HOH HOH . 
O 6 HOH A 34 534 61 HOH HOH . 
O 6 HOH A 35 535 63 HOH HOH . 
O 6 HOH A 36 536 70 HOH HOH . 
O 6 HOH A 37 537 74 HOH HOH . 
O 6 HOH A 38 538 75 HOH HOH . 
O 6 HOH A 39 539 77 HOH HOH . 
O 6 HOH A 40 540 78 HOH HOH . 
O 6 HOH A 41 541 80 HOH HOH . 
O 6 HOH A 42 542 83 HOH HOH . 
O 6 HOH A 43 543 84 HOH HOH . 
O 6 HOH A 44 544 86 HOH HOH . 
O 6 HOH A 45 545 88 HOH HOH . 
P 6 HOH B 1 501 91 HOH HOH . 
P 6 HOH B 2 502 36 HOH HOH . 
P 6 HOH B 3 503 73 HOH HOH . 
P 6 HOH B 4 504 22 HOH HOH . 
P 6 HOH B 5 505 65 HOH HOH . 
P 6 HOH B 6 506 18 HOH HOH . 
P 6 HOH B 7 507 89 HOH HOH . 
P 6 HOH B 8 508 7 HOH HOH . 
P 6 HOH B 9 509 12 HOH HOH . 
P 6 HOH B 10 510 15 HOH HOH . 
P 6 HOH B 11 511 19 HOH HOH . 
P 6 HOH B 12 512 21 HOH HOH . 
P 6 HOH B 13 513 24 HOH HOH . 
P 6 HOH B 14 514 25 HOH HOH . 
P 6 HOH B 15 515 26 HOH HOH . 
P 6 HOH B 16 516 27 HOH HOH . 
P 6 HOH B 17 517 28 HOH HOH . 
P 6 HOH B 18 518 30 HOH HOH . 
P 6 HOH B 19 519 31 HOH HOH . 
P 6 HOH B 20 520 33 HOH HOH . 
P 6 HOH B 21 521 34 HOH HOH . 
P 6 HOH B 22 522 35 HOH HOH . 
P 6 HOH B 23 523 37 HOH HOH . 
P 6 HOH B 24 524 40 HOH HOH . 
P 6 HOH B 25 525 43 HOH HOH . 
P 6 HOH B 26 526 45 HOH HOH . 
P 6 HOH B 27 527 48 HOH HOH . 
P 6 HOH B 28 528 51 HOH HOH . 
P 6 HOH B 29 529 52 HOH HOH . 
P 6 HOH B 30 530 54 HOH HOH . 
P 6 HOH B 31 531 55 HOH HOH . 
P 6 HOH B 32 532 57 HOH HOH . 
P 6 HOH B 33 533 58 HOH HOH . 
P 6 HOH B 34 534 62 HOH HOH . 
P 6 HOH B 35 535 66 HOH HOH . 
P 6 HOH B 36 536 67 HOH HOH . 
P 6 HOH B 37 537 68 HOH HOH . 
P 6 HOH B 38 538 69 HOH HOH . 
P 6 HOH B 39 539 71 HOH HOH . 
P 6 HOH B 40 540 72 HOH HOH . 
P 6 HOH B 41 541 76 HOH HOH . 
P 6 HOH B 42 542 79 HOH HOH . 
P 6 HOH B 43 543 81 HOH HOH . 
P 6 HOH B 44 544 82 HOH HOH . 
P 6 HOH B 45 545 85 HOH HOH . 
P 6 HOH B 46 546 90 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . D 2 28.625 66.162 68.403 1 91.37 ? C1 NAG 402 A 1 
HETATM 2 C C2 NAG . . . D 2 27.793 64.902 68.428 1 97.05 ? C2 NAG 402 A 1 
HETATM 3 C C3 NAG . . . D 2 27.074 64.725 67.106 1 97.83 ? C3 NAG 402 A 1 
HETATM 4 C C4 NAG . . . D 2 26.274 65.992 66.814 1 97.05 ? C4 NAG 402 A 1 
HETATM 5 C C5 NAG . . . D 2 27.102 67.273 66.96 1 94.38 ? C5 NAG 402 A 1 
HETATM 6 C C6 NAG . . . D 2 26.186 68.497 66.907 1 91.82 ? C6 NAG 402 A 1 
HETATM 7 C C7 NAG . . . D 2 28.548 63.108 69.946 1 101.7 ? C7 NAG 402 A 1 
HETATM 8 C C8 NAG . . . D 2 27.457 63.426 70.936 1 101.36 ? C8 NAG 402 A 1 
HETATM 9 N N2 NAG . . . D 2 28.657 63.798 68.806 1 100.34 ? N2 NAG 402 A 1 
HETATM 10 O O3 NAG . . . D 2 26.178 63.655 67.251 1 98.72 ? O3 NAG 402 A 1 
HETATM 11 O O4 NAG . . . D 2 25.737 65.93 65.512 1 99.49 ? O4 NAG 402 A 1 
HETATM 12 O O5 NAG . . . D 2 27.821 67.297 68.181 1 94.54 ? O5 NAG 402 A 1 
HETATM 13 O O6 NAG . . . D 2 26.931 69.682 67.095 1 85.23 ? O6 NAG 402 A 1 
HETATM 14 O O7 NAG . . . D 2 29.332 62.198 70.197 1 103.28 ? O7 NAG 402 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#