data_4X93
#
_model_server_result.job_id            LpmPD0qstMwUxhJxSYElTA 
_model_server_result.datetime_utc      '2024-11-13 01:23:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4x93 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":407}' 
#
_entry.id    4X93 
#
_exptl.entry_id    4X93 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              370.436 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4X93 
_cell.length_a            86.82 
_cell.length_b            86.82 
_cell.length_c            365.848 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4X93 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,O 1 1 
B,H,I,J,K,L,M,N,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             N 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 33 A CYS 32 1_555 A SG CYS 57 A CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf2 B SG CYS 33 B CYS 32 1_555 B SG CYS 57 B CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
covale ? covale1 A ND2 ASN 67 A ASN 66 1_555 C C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale2 A ND2 ASN 241 A ASN 240 1_555 D C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale3 A ND2 ASN 257 A ASN 256 1_555 E C1 NAG . A NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale4 A ND2 ASN 366 A ASN 365 1_555 F C1 NAG . A NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale5 B ND2 ASN 67 B ASN 66 1_555 H C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale6 B ND2 ASN 241 B ASN 240 1_555 I C1 NAG . B NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
covale ? covale7 B ND2 ASN 257 B ASN 256 1_555 J C1 NAG . B NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale8 B ND2 ASN 366 B ASN 365 1_555 K C1 NAG . B NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
#
_chem_comp.formula           'C16 H34 O9' 
_chem_comp.formula_weight    370.436 
_chem_comp.id                PE8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C2 PE8 sing 300 n n 
O1 HO1 PE8 sing 301 n n 
C2 C3 PE8 sing 302 n n 
C2 H21 PE8 sing 303 n n 
C2 H22 PE8 sing 304 n n 
C3 O4 PE8 sing 305 n n 
C3 H31 PE8 sing 306 n n 
C3 H32 PE8 sing 307 n n 
O4 C5 PE8 sing 308 n n 
C5 C6 PE8 sing 309 n n 
C5 H51 PE8 sing 310 n n 
C5 H52 PE8 sing 311 n n 
C6 O7 PE8 sing 312 n n 
C6 H61 PE8 sing 313 n n 
C6 H62 PE8 sing 314 n n 
O7 C8 PE8 sing 315 n n 
C8 C9 PE8 sing 316 n n 
C8 H81 PE8 sing 317 n n 
C8 H82 PE8 sing 318 n n 
C9 O10 PE8 sing 319 n n 
C9 H91 PE8 sing 320 n n 
C9 H92 PE8 sing 321 n n 
O10 C11 PE8 sing 322 n n 
C11 C12 PE8 sing 323 n n 
C11 H111 PE8 sing 324 n n 
C11 H112 PE8 sing 325 n n 
C12 O13 PE8 sing 326 n n 
C12 H121 PE8 sing 327 n n 
C12 H122 PE8 sing 328 n n 
O13 C14 PE8 sing 329 n n 
C14 C15 PE8 sing 330 n n 
C14 H141 PE8 sing 331 n n 
C14 H142 PE8 sing 332 n n 
C15 O16 PE8 sing 333 n n 
C15 H151 PE8 sing 334 n n 
C15 H152 PE8 sing 335 n n 
O16 C17 PE8 sing 336 n n 
C17 C18 PE8 sing 337 n n 
C17 H171 PE8 sing 338 n n 
C17 H172 PE8 sing 339 n n 
C18 O19 PE8 sing 340 n n 
C18 H181 PE8 sing 341 n n 
C18 H182 PE8 sing 342 n n 
O19 C20 PE8 sing 343 n n 
C20 C21 PE8 sing 344 n n 
C20 H201 PE8 sing 345 n n 
C20 H202 PE8 sing 346 n n 
C21 O22 PE8 sing 347 n n 
C21 H211 PE8 sing 348 n n 
C21 H212 PE8 sing 349 n n 
O22 C23 PE8 sing 350 n n 
C23 C24 PE8 sing 351 n n 
C23 H231 PE8 sing 352 n n 
C23 H232 PE8 sing 353 n n 
C24 O25 PE8 sing 354 n n 
C24 H241 PE8 sing 355 n n 
C24 H242 PE8 sing 356 n n 
O25 H25 PE8 sing 357 n n 
#
_atom_sites.entry_id                     4X93 
_atom_sites.fract_transf_matrix[1][1]    0.011518 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011518 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002733 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 401 380 NAG NAG . 
D 2 NAG A 1 402 381 NAG NAG . 
E 2 NAG A 1 403 382 NAG NAG . 
F 2 NAG A 1 404 383 NAG NAG . 
G 3 EPE A 1 405 385 EPE EPE . 
H 2 NAG B 1 401 380 NAG NAG . 
I 2 NAG B 1 402 381 NAG NAG . 
J 2 NAG B 1 403 382 NAG NAG . 
K 2 NAG B 1 404 383 NAG NAG . 
L 3 EPE B 1 405 385 EPE EPE . 
M 4 PEG B 1 406 391 PEG PEG . 
N 5 PE8 B 1 407 397 PE8 PE8 . 
O 6 HOH A 1 501 39 HOH HOH . 
O 6 HOH A 2 502 38 HOH HOH . 
O 6 HOH A 3 503 87 HOH HOH . 
O 6 HOH A 4 504 64 HOH HOH . 
O 6 HOH A 5 505 1 HOH HOH . 
O 6 HOH A 6 506 2 HOH HOH . 
O 6 HOH A 7 507 3 HOH HOH . 
O 6 HOH A 8 508 4 HOH HOH . 
O 6 HOH A 9 509 5 HOH HOH . 
O 6 HOH A 10 510 6 HOH HOH . 
O 6 HOH A 11 511 8 HOH HOH . 
O 6 HOH A 12 512 9 HOH HOH . 
O 6 HOH A 13 513 10 HOH HOH . 
O 6 HOH A 14 514 11 HOH HOH . 
O 6 HOH A 15 515 13 HOH HOH . 
O 6 HOH A 16 516 14 HOH HOH . 
O 6 HOH A 17 517 16 HOH HOH . 
O 6 HOH A 18 518 17 HOH HOH . 
O 6 HOH A 19 519 20 HOH HOH . 
O 6 HOH A 20 520 23 HOH HOH . 
O 6 HOH A 21 521 29 HOH HOH . 
O 6 HOH A 22 522 32 HOH HOH . 
O 6 HOH A 23 523 41 HOH HOH . 
O 6 HOH A 24 524 42 HOH HOH . 
O 6 HOH A 25 525 44 HOH HOH . 
O 6 HOH A 26 526 46 HOH HOH . 
O 6 HOH A 27 527 47 HOH HOH . 
O 6 HOH A 28 528 49 HOH HOH . 
O 6 HOH A 29 529 50 HOH HOH . 
O 6 HOH A 30 530 53 HOH HOH . 
O 6 HOH A 31 531 56 HOH HOH . 
O 6 HOH A 32 532 59 HOH HOH . 
O 6 HOH A 33 533 60 HOH HOH . 
O 6 HOH A 34 534 61 HOH HOH . 
O 6 HOH A 35 535 63 HOH HOH . 
O 6 HOH A 36 536 70 HOH HOH . 
O 6 HOH A 37 537 74 HOH HOH . 
O 6 HOH A 38 538 75 HOH HOH . 
O 6 HOH A 39 539 77 HOH HOH . 
O 6 HOH A 40 540 78 HOH HOH . 
O 6 HOH A 41 541 80 HOH HOH . 
O 6 HOH A 42 542 83 HOH HOH . 
O 6 HOH A 43 543 84 HOH HOH . 
O 6 HOH A 44 544 86 HOH HOH . 
O 6 HOH A 45 545 88 HOH HOH . 
P 6 HOH B 1 501 91 HOH HOH . 
P 6 HOH B 2 502 36 HOH HOH . 
P 6 HOH B 3 503 73 HOH HOH . 
P 6 HOH B 4 504 22 HOH HOH . 
P 6 HOH B 5 505 65 HOH HOH . 
P 6 HOH B 6 506 18 HOH HOH . 
P 6 HOH B 7 507 89 HOH HOH . 
P 6 HOH B 8 508 7 HOH HOH . 
P 6 HOH B 9 509 12 HOH HOH . 
P 6 HOH B 10 510 15 HOH HOH . 
P 6 HOH B 11 511 19 HOH HOH . 
P 6 HOH B 12 512 21 HOH HOH . 
P 6 HOH B 13 513 24 HOH HOH . 
P 6 HOH B 14 514 25 HOH HOH . 
P 6 HOH B 15 515 26 HOH HOH . 
P 6 HOH B 16 516 27 HOH HOH . 
P 6 HOH B 17 517 28 HOH HOH . 
P 6 HOH B 18 518 30 HOH HOH . 
P 6 HOH B 19 519 31 HOH HOH . 
P 6 HOH B 20 520 33 HOH HOH . 
P 6 HOH B 21 521 34 HOH HOH . 
P 6 HOH B 22 522 35 HOH HOH . 
P 6 HOH B 23 523 37 HOH HOH . 
P 6 HOH B 24 524 40 HOH HOH . 
P 6 HOH B 25 525 43 HOH HOH . 
P 6 HOH B 26 526 45 HOH HOH . 
P 6 HOH B 27 527 48 HOH HOH . 
P 6 HOH B 28 528 51 HOH HOH . 
P 6 HOH B 29 529 52 HOH HOH . 
P 6 HOH B 30 530 54 HOH HOH . 
P 6 HOH B 31 531 55 HOH HOH . 
P 6 HOH B 32 532 57 HOH HOH . 
P 6 HOH B 33 533 58 HOH HOH . 
P 6 HOH B 34 534 62 HOH HOH . 
P 6 HOH B 35 535 66 HOH HOH . 
P 6 HOH B 36 536 67 HOH HOH . 
P 6 HOH B 37 537 68 HOH HOH . 
P 6 HOH B 38 538 69 HOH HOH . 
P 6 HOH B 39 539 71 HOH HOH . 
P 6 HOH B 40 540 72 HOH HOH . 
P 6 HOH B 41 541 76 HOH HOH . 
P 6 HOH B 42 542 79 HOH HOH . 
P 6 HOH B 43 543 81 HOH HOH . 
P 6 HOH B 44 544 82 HOH HOH . 
P 6 HOH B 45 545 85 HOH HOH . 
P 6 HOH B 46 546 90 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 PE8 . . . N 5 42.61 75.183 -2.201 1 85.77 ? O1 PE8 407 B 1 
HETATM 2 C C2 PE8 . . . N 5 41.906 76.272 -1.594 1 85.24 ? C2 PE8 407 B 1 
HETATM 3 C C3 PE8 . . . N 5 40.592 75.78 -0.989 1 86.13 ? C3 PE8 407 B 1 
HETATM 4 O O4 PE8 . . . N 5 39.48 76.251 -1.754 1 90.04 ? O4 PE8 407 B 1 
HETATM 5 C C5 PE8 . . . N 5 39.11 77.603 -1.466 1 91.55 ? C5 PE8 407 B 1 
HETATM 6 C C6 PE8 . . . N 5 38.481 78.279 -2.688 1 95.13 ? C6 PE8 407 B 1 
HETATM 7 O O7 PE8 . . . N 5 38.777 79.683 -2.688 1 95.94 ? O7 PE8 407 B 1 
HETATM 8 C C8 PE8 . . . N 5 39.815 80.061 -3.605 1 96.22 ? C8 PE8 407 B 1 
HETATM 9 C C9 PE8 . . . N 5 40.348 81.451 -3.254 1 93.85 ? C9 PE8 407 B 1 
HETATM 10 O O10 PE8 . . . N 5 41.646 81.64 -3.832 1 89.7 ? O10 PE8 407 B 1 
HETATM 11 C C11 PE8 . . . N 5 42.51 82.515 -3.098 1 87.9 ? C11 PE8 407 B 1 
HETATM 12 C C12 PE8 . . . N 5 43.756 81.737 -2.678 1 86 ? C12 PE8 407 B 1 
HETATM 13 O O13 PE8 . . . N 5 44.675 82.574 -1.974 1 84.09 ? O13 PE8 407 B 1 
HETATM 14 C C14 PE8 . . . N 5 44.446 82.653 -0.569 1 88.22 ? C14 PE8 407 B 1 
HETATM 15 C C15 PE8 . . . N 5 45.554 83.473 0.073 1 90.08 ? C15 PE8 407 B 1 
HETATM 16 O O16 PE8 . . . N 5 46.779 83.18 -0.604 1 94.97 ? O16 PE8 407 B 1 
HETATM 17 C C17 PE8 . . . N 5 47.603 84.324 -0.851 1 95.5 ? C17 PE8 407 B 1 
HETATM 18 C C18 PE8 . . . N 5 48.926 83.889 -1.482 1 93.72 ? C18 PE8 407 B 1 
HETATM 19 O O19 PE8 . . . N 5 49.489 84.996 -2.185 1 93.46 ? O19 PE8 407 B 1 
HETATM 20 C C20 PE8 . . . N 5 50.542 84.654 -3.086 1 91.95 ? C20 PE8 407 B 1 
HETATM 21 C C21 PE8 . . . N 5 50.735 85.803 -4.071 1 92.95 ? C21 PE8 407 B 1 
HETATM 22 O O22 PE8 . . . N 5 49.456 86.347 -4.399 1 94.45 ? O22 PE8 407 B 1 
HETATM 23 C C23 PE8 . . . N 5 49.512 87.481 -5.265 1 96.12 ? C23 PE8 407 B 1 
HETATM 24 C C24 PE8 . . . N 5 49.545 88.759 -4.44 1 96.35 ? C24 PE8 407 B 1 
HETATM 25 O O25 PE8 . . . N 5 50.91 89.141 -4.25 1 97.47 ? O25 PE8 407 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           25 
#