data_4X95
#
_model_server_result.job_id            5cdB8a1AzRl33B3Xk8HkAg 
_model_server_result.datetime_utc      '2024-11-24 05:12:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4x95 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":405}' 
#
_entry.id    4X95 
#
_exptl.entry_id    4X95 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4X95 
_cell.length_a            72.385 
_cell.length_b            125.275 
_cell.length_c            140.215 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4X95 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,H 1 1 
B,D,I,J,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n C NAG 1 C 1 NAG A 380 NAG 
2 n C NAG 2 C 2 NAG A 384 NAG 
2 n C BMA 3 C 3 BMA A 385 MAN 
2 n D NAG 1 D 1 NAG B 380 NAG 
2 n D NAG 2 D 2 NAG B 384 NAG 
2 n D BMA 3 D 3 BMA B 385 MAN 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 33 A CYS 32 1_555 A SG CYS 57 A CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 B SG CYS 33 B CYS 32 1_555 B SG CYS 57 B CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
covale ? covale1 A ND2 ASN 67 A ASN 66 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? 
covale ? covale2 A OG SER 166 A SER 165 1_555 H P1 MAY . A MAY 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.629 ? 
covale ? covale3 A ND2 ASN 241 A ASN 240 1_555 E C1 NAG . A NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? 
covale ? covale4 A ND2 ASN 257 A ASN 256 1_555 F C1 NAG . A NAG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? 
covale ? covale5 A ND2 ASN 366 A ASN 365 1_555 G C1 NAG . A NAG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale6 B ND2 ASN 67 B ASN 66 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.476 ? 
covale ? covale7 B OG SER 166 B SER 165 1_555 L P1 MAY . B MAY 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.622 ? 
covale ? covale8 B ND2 ASN 241 B ASN 240 1_555 I C1 NAG . B NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? 
covale ? covale9 B ND2 ASN 257 B ASN 256 1_555 J C1 NAG . B NAG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? 
covale ? covale10 B ND2 ASN 366 B ASN 365 1_555 K C1 NAG . B NAG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? 
covale ? covale11 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale12 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? 
covale ? covale13 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale14 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 319 n n 
C1 O1 NAG sing 320 n n 
C1 O5 NAG sing 321 n n 
C1 H1 NAG sing 322 n n 
C2 C3 NAG sing 323 n n 
C2 N2 NAG sing 324 n n 
C2 H2 NAG sing 325 n n 
C3 C4 NAG sing 326 n n 
C3 O3 NAG sing 327 n n 
C3 H3 NAG sing 328 n n 
C4 C5 NAG sing 329 n n 
C4 O4 NAG sing 330 n n 
C4 H4 NAG sing 331 n n 
C5 C6 NAG sing 332 n n 
C5 O5 NAG sing 333 n n 
C5 H5 NAG sing 334 n n 
C6 O6 NAG sing 335 n n 
C6 H61 NAG sing 336 n n 
C6 H62 NAG sing 337 n n 
C7 C8 NAG sing 338 n n 
C7 N2 NAG sing 339 n n 
C7 O7 NAG doub 340 n n 
C8 H81 NAG sing 341 n n 
C8 H82 NAG sing 342 n n 
C8 H83 NAG sing 343 n n 
N2 HN2 NAG sing 344 n n 
O1 HO1 NAG sing 345 n n 
O3 HO3 NAG sing 346 n n 
O4 HO4 NAG sing 347 n n 
O6 HO6 NAG sing 348 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4X95 
_atom_sites.fract_transf_matrix[1][1]    0.013815 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007982 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007132 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NAG A 1 404 381 NAG NAG . 
F 3 NAG A 1 405 382 NAG NAG . 
G 3 NAG A 1 406 383 NAG NAG . 
H 4 MAY A 1 407 386 MAY MAY . 
I 3 NAG B 1 404 381 NAG NAG . 
J 3 NAG B 1 405 382 NAG NAG . 
K 3 NAG B 1 406 383 NAG NAG . 
L 4 MAY B 1 407 386 MAY MAY . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . F 3 -12.631 -16.837 26.929 1 190.87 ? C1 NAG 405 A 1 
HETATM 2 C C2 NAG . . . F 3 -12.729 -18.213 26.267 1 194.62 ? C2 NAG 405 A 1 
HETATM 3 C C3 NAG . . . F 3 -14.167 -18.547 25.865 1 197.59 ? C3 NAG 405 A 1 
HETATM 4 C C4 NAG . . . F 3 -15.213 -18.118 26.891 1 201.05 ? C4 NAG 405 A 1 
HETATM 5 C C5 NAG . . . F 3 -14.938 -16.715 27.43 1 198 ? C5 NAG 405 A 1 
HETATM 6 C C6 NAG . . . F 3 -15.9 -16.329 28.553 1 198.02 ? C6 NAG 405 A 1 
HETATM 7 C C7 NAG . . . F 3 -10.844 -19.068 24.924 1 193.74 ? C7 NAG 405 A 1 
HETATM 8 C C8 NAG . . . F 3 -10.111 -18.974 23.619 1 190.28 ? C8 NAG 405 A 1 
HETATM 9 N N2 NAG . . . F 3 -11.899 -18.258 25.07 1 193.57 ? N2 NAG 405 A 1 
HETATM 10 O O3 NAG . . . F 3 -14.289 -19.933 25.632 1 198.37 ? O3 NAG 405 A 1 
HETATM 11 O O4 NAG . . . F 3 -16.481 -18.159 26.275 1 204.44 ? O4 NAG 405 A 1 
HETATM 12 O O5 NAG . . . F 3 -13.619 -16.663 27.924 1 196.09 ? O5 NAG 405 A 1 
HETATM 13 O O6 NAG . . . F 3 -15.6 -17.048 29.731 1 195.48 ? O6 NAG 405 A 1 
HETATM 14 O O7 NAG . . . F 3 -10.453 -19.859 25.782 1 196.27 ? O7 NAG 405 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           14 
#