data_4X95 # _model_server_result.job_id hvz7Eyw-vqctgPGx9itzyQ _model_server_result.datetime_utc '2024-11-13 01:07:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x95 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":405}' # _entry.id 4X95 # _exptl.entry_id 4X95 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4X95 _cell.length_a 72.385 _cell.length_b 125.275 _cell.length_c 140.215 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X95 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H 1 1 B,D,I,J,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 I N N ? 3 J N N ? 3 K N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 380 NAG 2 n C NAG 2 C 2 NAG A 384 NAG 2 n C BMA 3 C 3 BMA A 385 MAN 2 n D NAG 1 D 1 NAG B 380 NAG 2 n D NAG 2 D 2 NAG B 384 NAG 2 n D BMA 3 D 3 BMA B 385 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 33 A CYS 32 1_555 A SG CYS 57 A CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 B SG CYS 33 B CYS 32 1_555 B SG CYS 57 B CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 67 A ASN 66 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale2 A OG SER 166 A SER 165 1_555 H P1 MAY . A MAY 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.629 ? covale ? covale3 A ND2 ASN 241 A ASN 240 1_555 E C1 NAG . A NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale4 A ND2 ASN 257 A ASN 256 1_555 F C1 NAG . A NAG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale5 A ND2 ASN 366 A ASN 365 1_555 G C1 NAG . A NAG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale6 B ND2 ASN 67 B ASN 66 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.476 ? covale ? covale7 B OG SER 166 B SER 165 1_555 L P1 MAY . B MAY 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.622 ? covale ? covale8 B ND2 ASN 241 B ASN 240 1_555 I C1 NAG . B NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale9 B ND2 ASN 257 B ASN 256 1_555 J C1 NAG . B NAG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale10 B ND2 ASN 366 B ASN 365 1_555 K C1 NAG . B NAG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale11 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale12 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale13 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale14 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 319 n n C1 O1 NAG sing 320 n n C1 O5 NAG sing 321 n n C1 H1 NAG sing 322 n n C2 C3 NAG sing 323 n n C2 N2 NAG sing 324 n n C2 H2 NAG sing 325 n n C3 C4 NAG sing 326 n n C3 O3 NAG sing 327 n n C3 H3 NAG sing 328 n n C4 C5 NAG sing 329 n n C4 O4 NAG sing 330 n n C4 H4 NAG sing 331 n n C5 C6 NAG sing 332 n n C5 O5 NAG sing 333 n n C5 H5 NAG sing 334 n n C6 O6 NAG sing 335 n n C6 H61 NAG sing 336 n n C6 H62 NAG sing 337 n n C7 C8 NAG sing 338 n n C7 N2 NAG sing 339 n n C7 O7 NAG doub 340 n n C8 H81 NAG sing 341 n n C8 H82 NAG sing 342 n n C8 H83 NAG sing 343 n n N2 HN2 NAG sing 344 n n O1 HO1 NAG sing 345 n n O3 HO3 NAG sing 346 n n O4 HO4 NAG sing 347 n n O6 HO6 NAG sing 348 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4X95 _atom_sites.fract_transf_matrix[1][1] 0.013815 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007982 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007132 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 404 381 NAG NAG . F 3 NAG A 1 405 382 NAG NAG . G 3 NAG A 1 406 383 NAG NAG . H 4 MAY A 1 407 386 MAY MAY . I 3 NAG B 1 404 381 NAG NAG . J 3 NAG B 1 405 382 NAG NAG . K 3 NAG B 1 406 383 NAG NAG . L 4 MAY B 1 407 386 MAY MAY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . J 3 50.31 48.819 -10.86 1 237.28 ? C1 NAG 405 B 1 HETATM 2 C C2 NAG . . . J 3 51.743 49.247 -11.183 1 243.08 ? C2 NAG 405 B 1 HETATM 3 C C3 NAG . . . J 3 52.017 50.653 -10.639 1 250.01 ? C3 NAG 405 B 1 HETATM 4 C C4 NAG . . . J 3 50.86 51.623 -10.894 1 249.88 ? C4 NAG 405 B 1 HETATM 5 C C5 NAG . . . J 3 49.528 50.991 -10.484 1 243.68 ? C5 NAG 405 B 1 HETATM 6 C C6 NAG . . . J 3 48.322 51.888 -10.75 1 241.74 ? C6 NAG 405 B 1 HETATM 7 C C7 NAG . . . J 3 52.981 47.119 -11.19 1 236.06 ? C7 NAG 405 B 1 HETATM 8 C C8 NAG . . . J 3 54.006 46.277 -10.489 1 236.31 ? C8 NAG 405 B 1 HETATM 9 N N2 NAG . . . J 3 52.71 48.303 -10.634 1 240.33 ? N2 NAG 405 B 1 HETATM 10 O O3 NAG . . . J 3 53.217 51.168 -11.176 1 256.14 ? O3 NAG 405 B 1 HETATM 11 O O4 NAG . . . J 3 51.082 52.821 -10.18 1 253.34 ? O4 NAG 405 B 1 HETATM 12 O O5 NAG . . . J 3 49.37 49.803 -11.223 1 238.87 ? O5 NAG 405 B 1 HETATM 13 O O6 NAG . . . J 3 47.127 51.172 -10.501 1 234.77 ? O6 NAG 405 B 1 HETATM 14 O O7 NAG . . . J 3 52.442 46.7 -12.214 1 232.84 ? O7 NAG 405 B 1 # _model_server_stats.io_time_ms 105 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 14 #