data_4X95 # _model_server_result.job_id GyTDwFs9Yp7pgOPhITSw0Q _model_server_result.datetime_utc '2024-11-21 17:20:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x95 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":407}' # _entry.id 4X95 # _exptl.entry_id 4X95 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 370.482 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'METHYL ARACHIDONYL FLUOROPHOSPHONATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4X95 _cell.length_a 72.385 _cell.length_b 125.275 _cell.length_c 140.215 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X95 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H 1 1 B,D,I,J,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 L N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 380 NAG 2 n C NAG 2 C 2 NAG A 384 NAG 2 n C BMA 3 C 3 BMA A 385 MAN 2 n D NAG 1 D 1 NAG B 380 NAG 2 n D NAG 2 D 2 NAG B 384 NAG 2 n D BMA 3 D 3 BMA B 385 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 33 A CYS 32 1_555 A SG CYS 57 A CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 B SG CYS 33 B CYS 32 1_555 B SG CYS 57 B CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 67 A ASN 66 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale2 A OG SER 166 A SER 165 1_555 H P1 MAY . A MAY 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.629 ? covale ? covale3 A ND2 ASN 241 A ASN 240 1_555 E C1 NAG . A NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale4 A ND2 ASN 257 A ASN 256 1_555 F C1 NAG . A NAG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale5 A ND2 ASN 366 A ASN 365 1_555 G C1 NAG . A NAG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale6 B ND2 ASN 67 B ASN 66 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.476 ? covale ? covale7 B OG SER 166 B SER 165 1_555 L P1 MAY . B MAY 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.622 ? covale ? covale8 B ND2 ASN 241 B ASN 240 1_555 I C1 NAG . B NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale9 B ND2 ASN 257 B ASN 256 1_555 J C1 NAG . B NAG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale10 B ND2 ASN 366 B ASN 365 1_555 K C1 NAG . B NAG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale11 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale12 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale13 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale14 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C21 H36 F O2 P' _chem_comp.formula_weight 370.482 _chem_comp.id MAY _chem_comp.mon_nstd_flag . _chem_comp.name 'METHYL ARACHIDONYL FLUOROPHOSPHONATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MAFP # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 F MAY sing 240 n n C1 P1 MAY sing 241 n n C1 C2 MAY sing 242 n n C1 H1 MAY sing 243 n n C1 H1A MAY sing 244 n n O1 P1 MAY doub 245 n n P1 O2 MAY sing 246 n n C2 C3 MAY sing 247 n n C2 H2 MAY sing 248 n n C2 H2A MAY sing 249 n n O2 CM MAY sing 250 n n C4 C3 MAY sing 251 n n C3 H3 MAY sing 252 n n C3 H3A MAY sing 253 n n C4 C5 MAY sing 254 n n C4 H4 MAY sing 255 n n C4 H4A MAY sing 256 n n C5 C6 MAY doub 257 z n C5 H5 MAY sing 258 n n C7 C6 MAY sing 259 n n C6 H6 MAY sing 260 n n C7 C8 MAY sing 261 n n C7 H7 MAY sing 262 n n C7 H7A MAY sing 263 n n C9 C8 MAY doub 264 n n C8 H8 MAY sing 265 z n C10 C9 MAY sing 266 n n C9 H9 MAY sing 267 n n CM HM MAY sing 268 n n CM HMA MAY sing 269 n n CM HMB MAY sing 270 n n C11 C10 MAY sing 271 n n C10 H10 MAY sing 272 n n C10 H10A MAY sing 273 n n C12 C11 MAY doub 274 n n C11 H11 MAY sing 275 z n C13 C12 MAY sing 276 n n C12 H12 MAY sing 277 n n C14 C13 MAY sing 278 n n C13 H13 MAY sing 279 n n C13 H13A MAY sing 280 n n C15 C14 MAY doub 281 n n C14 H14 MAY sing 282 z n C16 C15 MAY sing 283 n n C15 H15 MAY sing 284 n n C17 C16 MAY sing 285 n n C16 H16 MAY sing 286 n n C16 H16A MAY sing 287 n n C17 C18 MAY sing 288 n n C17 H17 MAY sing 289 n n C17 H17A MAY sing 290 n n C19 C18 MAY sing 291 n n C18 H18 MAY sing 292 n n C18 H18A MAY sing 293 n n C19 C20 MAY sing 294 n n C19 H19 MAY sing 295 n n C19 H19A MAY sing 296 n n C20 H20 MAY sing 297 n n C20 H20A MAY sing 298 n n C20 H20B MAY sing 299 n n # _atom_sites.entry_id 4X95 _atom_sites.fract_transf_matrix[1][1] 0.013815 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007982 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007132 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 404 381 NAG NAG . F 3 NAG A 1 405 382 NAG NAG . G 3 NAG A 1 406 383 NAG NAG . H 4 MAY A 1 407 386 MAY MAY . I 3 NAG B 1 404 381 NAG NAG . J 3 NAG B 1 405 382 NAG NAG . K 3 NAG B 1 406 383 NAG NAG . L 4 MAY B 1 407 386 MAY MAY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAY . . . L 4 25.777 35.159 -2.792 1 179.1 ? C1 MAY 407 B 1 HETATM 2 O O1 MAY . . . L 4 25.4 33.628 -5.015 1 181.6 ? O1 MAY 407 B 1 HETATM 3 P P1 MAY . . . L 4 25.698 35.019 -4.607 1 184.45 ? P1 MAY 407 B 1 HETATM 4 C C2 MAY . . . L 4 26.656 34.095 -2.133 1 175.55 ? C2 MAY 407 B 1 HETATM 5 O O2 MAY . . . L 4 27.06 35.549 -5.307 1 189.07 ? O2 MAY 407 B 1 HETATM 6 C C3 MAY . . . L 4 27.398 34.627 -0.911 1 171.09 ? C3 MAY 407 B 1 HETATM 7 C CM MAY . . . L 4 28.365 35.302 -4.777 1 190.94 ? CM MAY 407 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #