data_4X9D # _model_server_result.job_id UsKo3isdONMuzn7RNgtuoQ _model_server_result.datetime_utc '2025-09-22 02:35:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x9d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":103}' # _entry.id 4X9D # _exptl.entry_id 4X9D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 35.453 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLORIDE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4X9D _cell.length_a 57.741 _cell.length_b 66.874 _cell.length_c 109.31 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X9D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 Q N N ? 8 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O TYR 48 A TYR 48 1_555 I NA NA . A NA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc2 I NA NA . A NA 103 1_555 N O3' U5P . B U5P 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.153 ? metalc ? metalc3 I NA NA . A NA 103 1_555 N O2' U5P . B U5P 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.157 ? metalc ? metalc4 J O3' U5P . A U5P 104 1_555 Z NA NA . F NA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.907 ? metalc ? metalc5 B O TYR 48 B TYR 48 1_555 M NA NA . B NA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? metalc ? metalc6 L NA NA . B NA 102 1_555 CA O HOH . B HOH 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.811 ? metalc ? metalc7 L NA NA . B NA 102 1_555 R O3P U5P . C U5P 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc8 L NA NA . B NA 102 1_555 DA O HOH . C HOH 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? metalc ? metalc9 L NA NA . B NA 102 1_555 DA O HOH . C HOH 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc10 L NA NA . B NA 102 1_555 DA O HOH . C HOH 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.9 ? metalc ? metalc11 M NA NA . B NA 103 1_555 R O3' U5P . C U5P 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.982 ? metalc ? metalc12 C O TYR 48 C TYR 48 1_555 P NA NA . C NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.841 ? metalc ? metalc13 P NA NA . C NA 102 1_555 S O3' U5P . D U5P 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? metalc ? metalc14 F O TYR 48 F TYR 48 1_555 Z NA NA . F NA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? # _chem_comp.formula 'Cl -1' _chem_comp.formula_weight 35.453 _chem_comp.id CL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4X9D _atom_sites.fract_transf_matrix[1][1] 0.017319 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014953 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009148 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 PGE A 1 101 5 PGE PGE . H 3 SO4 A 1 102 8 SO4 SO4 . I 4 NA A 1 103 15 NA NA . J 5 U5P A 1 104 101 U5P U . K 6 EDO B 1 101 4 EDO EDO . L 4 NA B 1 102 10 NA NA . M 4 NA B 1 103 13 NA NA . N 5 U5P B 1 104 101 U5P U . O 7 PG4 C 1 101 2 PG4 PG4 . P 4 NA C 1 102 11 NA NA . Q 8 CL C 1 103 16 CL CL . R 5 U5P C 1 104 101 U5P U . S 5 U5P D 1 101 101 U5P U . T 7 PG4 E 1 101 1 PG4 PG4 . U 2 PGE E 1 102 6 PGE PGE . V 8 CL E 1 103 9 CL CL . W 5 U5P E 1 104 101 U5P U . X 9 PEG F 1 101 3 PEG PEG . Y 3 SO4 F 1 102 7 SO4 SO4 . Z 4 NA F 1 103 14 NA NA . AA 5 U5P F 1 104 101 U5P U . BA 10 HOH A 1 201 181 HOH HOH . BA 10 HOH A 2 202 65 HOH HOH . BA 10 HOH A 3 203 194 HOH HOH . BA 10 HOH A 4 204 44 HOH HOH . BA 10 HOH A 5 205 51 HOH HOH . BA 10 HOH A 6 206 108 HOH HOH . BA 10 HOH A 7 207 166 HOH HOH . BA 10 HOH A 8 208 45 HOH HOH . BA 10 HOH A 9 209 8 HOH HOH . BA 10 HOH A 10 210 16 HOH HOH . BA 10 HOH A 11 211 36 HOH HOH . BA 10 HOH A 12 212 39 HOH HOH . BA 10 HOH A 13 213 47 HOH HOH . BA 10 HOH A 14 214 55 HOH HOH . BA 10 HOH A 15 215 64 HOH HOH . BA 10 HOH A 16 216 70 HOH HOH . BA 10 HOH A 17 217 88 HOH HOH . BA 10 HOH A 18 218 137 HOH HOH . BA 10 HOH A 19 219 145 HOH HOH . BA 10 HOH A 20 220 147 HOH HOH . BA 10 HOH A 21 221 165 HOH HOH . BA 10 HOH A 22 222 193 HOH HOH . BA 10 HOH A 23 223 196 HOH HOH . BA 10 HOH A 24 224 199 HOH HOH . BA 10 HOH A 25 225 218 HOH HOH . BA 10 HOH A 26 226 225 HOH HOH . BA 10 HOH A 27 227 230 HOH HOH . BA 10 HOH A 28 228 235 HOH HOH . CA 10 HOH B 1 201 221 HOH HOH . CA 10 HOH B 2 202 130 HOH HOH . CA 10 HOH B 3 203 163 HOH HOH . CA 10 HOH B 4 204 195 HOH HOH . CA 10 HOH B 5 205 72 HOH HOH . CA 10 HOH B 6 206 226 HOH HOH . CA 10 HOH B 7 207 15 HOH HOH . CA 10 HOH B 8 208 18 HOH HOH . CA 10 HOH B 9 209 19 HOH HOH . CA 10 HOH B 10 210 26 HOH HOH . CA 10 HOH B 11 211 29 HOH HOH . CA 10 HOH B 12 212 31 HOH HOH . CA 10 HOH B 13 213 52 HOH HOH . CA 10 HOH B 14 214 54 HOH HOH . CA 10 HOH B 15 215 56 HOH HOH . CA 10 HOH B 16 216 62 HOH HOH . CA 10 HOH B 17 217 71 HOH HOH . CA 10 HOH B 18 218 93 HOH HOH . CA 10 HOH B 19 219 97 HOH HOH . CA 10 HOH B 20 220 100 HOH HOH . CA 10 HOH B 21 221 105 HOH HOH . CA 10 HOH B 22 222 115 HOH HOH . CA 10 HOH B 23 223 117 HOH HOH . CA 10 HOH B 24 224 118 HOH HOH . CA 10 HOH B 25 225 134 HOH HOH . CA 10 HOH B 26 226 151 HOH HOH . CA 10 HOH B 27 227 155 HOH HOH . CA 10 HOH B 28 228 157 HOH HOH . CA 10 HOH B 29 229 170 HOH HOH . CA 10 HOH B 30 230 176 HOH HOH . CA 10 HOH B 31 231 184 HOH HOH . CA 10 HOH B 32 232 201 HOH HOH . CA 10 HOH B 33 233 202 HOH HOH . CA 10 HOH B 34 234 209 HOH HOH . CA 10 HOH B 35 235 214 HOH HOH . CA 10 HOH B 36 236 216 HOH HOH . CA 10 HOH B 37 237 223 HOH HOH . CA 10 HOH B 38 238 237 HOH HOH . CA 10 HOH B 39 239 241 HOH HOH . DA 10 HOH C 1 201 77 HOH HOH . DA 10 HOH C 2 202 20 HOH HOH . DA 10 HOH C 3 203 101 HOH HOH . DA 10 HOH C 4 204 2 HOH HOH . DA 10 HOH C 5 205 208 HOH HOH . DA 10 HOH C 6 206 179 HOH HOH . DA 10 HOH C 7 207 168 HOH HOH . DA 10 HOH C 8 208 177 HOH HOH . DA 10 HOH C 9 209 85 HOH HOH . DA 10 HOH C 10 210 183 HOH HOH . DA 10 HOH C 11 211 66 HOH HOH . DA 10 HOH C 12 212 200 HOH HOH . DA 10 HOH C 13 213 12 HOH HOH . DA 10 HOH C 14 214 37 HOH HOH . DA 10 HOH C 15 215 40 HOH HOH . DA 10 HOH C 16 216 46 HOH HOH . DA 10 HOH C 17 217 67 HOH HOH . DA 10 HOH C 18 218 68 HOH HOH . DA 10 HOH C 19 219 74 HOH HOH . DA 10 HOH C 20 220 79 HOH HOH . DA 10 HOH C 21 221 81 HOH HOH . DA 10 HOH C 22 222 82 HOH HOH . DA 10 HOH C 23 223 90 HOH HOH . DA 10 HOH C 24 224 94 HOH HOH . DA 10 HOH C 25 225 99 HOH HOH . DA 10 HOH C 26 226 125 HOH HOH . DA 10 HOH C 27 227 132 HOH HOH . DA 10 HOH C 28 228 138 HOH HOH . DA 10 HOH C 29 229 140 HOH HOH . DA 10 HOH C 30 230 146 HOH HOH . DA 10 HOH C 31 231 153 HOH HOH . DA 10 HOH C 32 232 154 HOH HOH . DA 10 HOH C 33 233 161 HOH HOH . DA 10 HOH C 34 234 171 HOH HOH . DA 10 HOH C 35 235 173 HOH HOH . DA 10 HOH C 36 236 211 HOH HOH . DA 10 HOH C 37 237 224 HOH HOH . DA 10 HOH C 38 238 228 HOH HOH . DA 10 HOH C 39 239 231 HOH HOH . DA 10 HOH C 40 240 236 HOH HOH . DA 10 HOH C 41 241 239 HOH HOH . EA 10 HOH D 1 201 229 HOH HOH . EA 10 HOH D 2 202 205 HOH HOH . EA 10 HOH D 3 203 169 HOH HOH . EA 10 HOH D 4 204 58 HOH HOH . EA 10 HOH D 5 205 80 HOH HOH . EA 10 HOH D 6 206 142 HOH HOH . EA 10 HOH D 7 207 131 HOH HOH . EA 10 HOH D 8 208 48 HOH HOH . EA 10 HOH D 9 209 141 HOH HOH . EA 10 HOH D 10 210 28 HOH HOH . EA 10 HOH D 11 211 73 HOH HOH . EA 10 HOH D 12 212 30 HOH HOH . EA 10 HOH D 13 213 35 HOH HOH . EA 10 HOH D 14 214 187 HOH HOH . EA 10 HOH D 15 215 95 HOH HOH . EA 10 HOH D 16 216 206 HOH HOH . EA 10 HOH D 17 217 128 HOH HOH . EA 10 HOH D 18 218 192 HOH HOH . EA 10 HOH D 19 219 188 HOH HOH . EA 10 HOH D 20 220 162 HOH HOH . EA 10 HOH D 21 221 13 HOH HOH . EA 10 HOH D 22 222 27 HOH HOH . EA 10 HOH D 23 223 49 HOH HOH . EA 10 HOH D 24 224 78 HOH HOH . EA 10 HOH D 25 225 87 HOH HOH . EA 10 HOH D 26 226 107 HOH HOH . EA 10 HOH D 27 227 112 HOH HOH . EA 10 HOH D 28 228 119 HOH HOH . EA 10 HOH D 29 229 122 HOH HOH . EA 10 HOH D 30 230 158 HOH HOH . EA 10 HOH D 31 231 175 HOH HOH . EA 10 HOH D 32 232 182 HOH HOH . EA 10 HOH D 33 233 190 HOH HOH . EA 10 HOH D 34 234 212 HOH HOH . EA 10 HOH D 35 235 215 HOH HOH . EA 10 HOH D 36 236 220 HOH HOH . EA 10 HOH D 37 237 232 HOH HOH . EA 10 HOH D 38 238 234 HOH HOH . FA 10 HOH E 1 201 217 HOH HOH . FA 10 HOH E 2 202 136 HOH HOH . FA 10 HOH E 3 203 180 HOH HOH . FA 10 HOH E 4 204 178 HOH HOH . FA 10 HOH E 5 205 227 HOH HOH . FA 10 HOH E 6 206 124 HOH HOH . FA 10 HOH E 7 207 172 HOH HOH . FA 10 HOH E 8 208 160 HOH HOH . FA 10 HOH E 9 209 129 HOH HOH . FA 10 HOH E 10 210 222 HOH HOH . FA 10 HOH E 11 211 109 HOH HOH . FA 10 HOH E 12 212 10 HOH HOH . FA 10 HOH E 13 213 207 HOH HOH . FA 10 HOH E 14 214 143 HOH HOH . FA 10 HOH E 15 215 59 HOH HOH . FA 10 HOH E 16 216 4 HOH HOH . FA 10 HOH E 17 217 23 HOH HOH . FA 10 HOH E 18 218 219 HOH HOH . FA 10 HOH E 19 219 43 HOH HOH . FA 10 HOH E 20 220 24 HOH HOH . FA 10 HOH E 21 221 75 HOH HOH . FA 10 HOH E 22 222 102 HOH HOH . FA 10 HOH E 23 223 104 HOH HOH . FA 10 HOH E 24 224 135 HOH HOH . FA 10 HOH E 25 225 6 HOH HOH . FA 10 HOH E 26 226 14 HOH HOH . FA 10 HOH E 27 227 21 HOH HOH . FA 10 HOH E 28 228 22 HOH HOH . FA 10 HOH E 29 229 34 HOH HOH . FA 10 HOH E 30 230 57 HOH HOH . FA 10 HOH E 31 231 61 HOH HOH . FA 10 HOH E 32 232 69 HOH HOH . FA 10 HOH E 33 233 76 HOH HOH . FA 10 HOH E 34 234 83 HOH HOH . FA 10 HOH E 35 235 86 HOH HOH . FA 10 HOH E 36 236 103 HOH HOH . FA 10 HOH E 37 237 111 HOH HOH . FA 10 HOH E 38 238 113 HOH HOH . FA 10 HOH E 39 239 116 HOH HOH . FA 10 HOH E 40 240 126 HOH HOH . FA 10 HOH E 41 241 127 HOH HOH . FA 10 HOH E 42 242 148 HOH HOH . FA 10 HOH E 43 243 152 HOH HOH . FA 10 HOH E 44 244 159 HOH HOH . FA 10 HOH E 45 245 167 HOH HOH . FA 10 HOH E 46 246 191 HOH HOH . FA 10 HOH E 47 247 198 HOH HOH . FA 10 HOH E 48 248 203 HOH HOH . FA 10 HOH E 49 249 204 HOH HOH . FA 10 HOH E 50 250 238 HOH HOH . GA 10 HOH F 1 201 114 HOH HOH . GA 10 HOH F 2 202 156 HOH HOH . GA 10 HOH F 3 203 38 HOH HOH . GA 10 HOH F 4 204 233 HOH HOH . GA 10 HOH F 5 205 84 HOH HOH . GA 10 HOH F 6 206 91 HOH HOH . GA 10 HOH F 7 207 32 HOH HOH . GA 10 HOH F 8 208 7 HOH HOH . GA 10 HOH F 9 209 98 HOH HOH . GA 10 HOH F 10 210 164 HOH HOH . GA 10 HOH F 11 211 53 HOH HOH . GA 10 HOH F 12 212 17 HOH HOH . GA 10 HOH F 13 213 92 HOH HOH . GA 10 HOH F 14 214 96 HOH HOH . GA 10 HOH F 15 215 63 HOH HOH . GA 10 HOH F 16 216 9 HOH HOH . GA 10 HOH F 17 217 3 HOH HOH . GA 10 HOH F 18 218 1 HOH HOH . GA 10 HOH F 19 219 41 HOH HOH . GA 10 HOH F 20 220 121 HOH HOH . GA 10 HOH F 21 221 139 HOH HOH . GA 10 HOH F 22 222 197 HOH HOH . GA 10 HOH F 23 223 5 HOH HOH . GA 10 HOH F 24 224 11 HOH HOH . GA 10 HOH F 25 225 25 HOH HOH . GA 10 HOH F 26 226 33 HOH HOH . GA 10 HOH F 27 227 42 HOH HOH . GA 10 HOH F 28 228 50 HOH HOH . GA 10 HOH F 29 229 60 HOH HOH . GA 10 HOH F 30 230 89 HOH HOH . GA 10 HOH F 31 231 106 HOH HOH . GA 10 HOH F 32 232 110 HOH HOH . GA 10 HOH F 33 233 120 HOH HOH . GA 10 HOH F 34 234 123 HOH HOH . GA 10 HOH F 35 235 133 HOH HOH . GA 10 HOH F 36 236 144 HOH HOH . GA 10 HOH F 37 237 149 HOH HOH . GA 10 HOH F 38 238 150 HOH HOH . GA 10 HOH F 39 239 174 HOH HOH . GA 10 HOH F 40 240 185 HOH HOH . GA 10 HOH F 41 241 186 HOH HOH . GA 10 HOH F 42 242 189 HOH HOH . GA 10 HOH F 43 243 210 HOH HOH . GA 10 HOH F 44 244 213 HOH HOH . GA 10 HOH F 45 245 240 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CL _atom_site.label_atom_id CL _atom_site.label_comp_id CL _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id V _atom_site.label_entity_id 8 _atom_site.Cartn_x 119.042 _atom_site.Cartn_y 9.235 _atom_site.Cartn_z -2.026 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 57.27 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CL _atom_site.auth_comp_id CL _atom_site.auth_seq_id 103 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #