data_4X9N # _model_server_result.job_id DjmYz79eNyGxcjKvGfOg5w _model_server_result.datetime_utc '2024-11-05 01:15:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x9n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 4X9N # _exptl.entry_id 4X9N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4X9N _cell.length_a 111.605 _cell.length_b 111.605 _cell.length_c 111.605 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X9N _symmetry.cell_setting ? _symmetry.Int_Tables_number 195 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 328 A CYS 294 1_555 A SG CYS 328 A CYS 294 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc1 A NE2 HIS 93 A HIS 59 1_555 C NI NI . A NI 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc2 A NE2 HIS 93 A HIS 59 1_555 C NI NI . A NI 402 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc3 C NI NI . A NI 402 1_555 D O HOH . A HOH 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? metalc ? metalc4 C NI NI . A NI 402 1_555 D O HOH . A HOH 538 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4X9N _atom_sites.fract_transf_matrix[1][1] 0.00896 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00896 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00896 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 401 600 FAD FAD . C 3 NI A 1 402 1 NI NI . D 4 HOH A 1 501 47 HOH HOH . D 4 HOH A 2 502 134 HOH HOH . D 4 HOH A 3 503 186 HOH HOH . D 4 HOH A 4 504 68 HOH HOH . D 4 HOH A 5 505 56 HOH HOH . D 4 HOH A 6 506 14 HOH HOH . D 4 HOH A 7 507 180 HOH HOH . D 4 HOH A 8 508 107 HOH HOH . D 4 HOH A 9 509 38 HOH HOH . D 4 HOH A 10 510 120 HOH HOH . D 4 HOH A 11 511 90 HOH HOH . D 4 HOH A 12 512 113 HOH HOH . D 4 HOH A 13 513 129 HOH HOH . D 4 HOH A 14 514 87 HOH HOH . D 4 HOH A 15 515 40 HOH HOH . D 4 HOH A 16 516 48 HOH HOH . D 4 HOH A 17 517 12 HOH HOH . D 4 HOH A 18 518 99 HOH HOH . D 4 HOH A 19 519 121 HOH HOH . D 4 HOH A 20 520 114 HOH HOH . D 4 HOH A 21 521 125 HOH HOH . D 4 HOH A 22 522 157 HOH HOH . D 4 HOH A 23 523 54 HOH HOH . D 4 HOH A 24 524 165 HOH HOH . D 4 HOH A 25 525 95 HOH HOH . D 4 HOH A 26 526 172 HOH HOH . D 4 HOH A 27 527 109 HOH HOH . D 4 HOH A 28 528 108 HOH HOH . D 4 HOH A 29 529 137 HOH HOH . D 4 HOH A 30 530 88 HOH HOH . D 4 HOH A 31 531 105 HOH HOH . D 4 HOH A 32 532 168 HOH HOH . D 4 HOH A 33 533 85 HOH HOH . D 4 HOH A 34 534 69 HOH HOH . D 4 HOH A 35 535 94 HOH HOH . D 4 HOH A 36 536 82 HOH HOH . D 4 HOH A 37 537 46 HOH HOH . D 4 HOH A 38 538 201 HOH HOH . D 4 HOH A 39 539 72 HOH HOH . D 4 HOH A 40 540 162 HOH HOH . D 4 HOH A 41 541 128 HOH HOH . D 4 HOH A 42 542 149 HOH HOH . D 4 HOH A 43 543 111 HOH HOH . D 4 HOH A 44 544 73 HOH HOH . D 4 HOH A 45 545 200 HOH HOH . D 4 HOH A 46 546 181 HOH HOH . D 4 HOH A 47 547 89 HOH HOH . D 4 HOH A 48 548 1 HOH HOH . D 4 HOH A 49 549 2 HOH HOH . D 4 HOH A 50 550 3 HOH HOH . D 4 HOH A 51 551 4 HOH HOH . D 4 HOH A 52 552 5 HOH HOH . D 4 HOH A 53 553 6 HOH HOH . D 4 HOH A 54 554 7 HOH HOH . D 4 HOH A 55 555 8 HOH HOH . D 4 HOH A 56 556 9 HOH HOH . D 4 HOH A 57 557 10 HOH HOH . D 4 HOH A 58 558 11 HOH HOH . D 4 HOH A 59 559 13 HOH HOH . D 4 HOH A 60 560 15 HOH HOH . D 4 HOH A 61 561 16 HOH HOH . D 4 HOH A 62 562 17 HOH HOH . D 4 HOH A 63 563 18 HOH HOH . D 4 HOH A 64 564 19 HOH HOH . D 4 HOH A 65 565 20 HOH HOH . D 4 HOH A 66 566 21 HOH HOH . D 4 HOH A 67 567 22 HOH HOH . D 4 HOH A 68 568 23 HOH HOH . D 4 HOH A 69 569 24 HOH HOH . D 4 HOH A 70 570 25 HOH HOH . D 4 HOH A 71 571 26 HOH HOH . D 4 HOH A 72 572 27 HOH HOH . D 4 HOH A 73 573 28 HOH HOH . D 4 HOH A 74 574 29 HOH HOH . D 4 HOH A 75 575 30 HOH HOH . D 4 HOH A 76 576 31 HOH HOH . D 4 HOH A 77 577 32 HOH HOH . D 4 HOH A 78 578 33 HOH HOH . D 4 HOH A 79 579 34 HOH HOH . D 4 HOH A 80 580 35 HOH HOH . D 4 HOH A 81 581 36 HOH HOH . D 4 HOH A 82 582 37 HOH HOH . D 4 HOH A 83 583 39 HOH HOH . D 4 HOH A 84 584 41 HOH HOH . D 4 HOH A 85 585 42 HOH HOH . D 4 HOH A 86 586 43 HOH HOH . D 4 HOH A 87 587 44 HOH HOH . D 4 HOH A 88 588 45 HOH HOH . D 4 HOH A 89 589 49 HOH HOH . D 4 HOH A 90 590 50 HOH HOH . D 4 HOH A 91 591 51 HOH HOH . D 4 HOH A 92 592 52 HOH HOH . D 4 HOH A 93 593 53 HOH HOH . D 4 HOH A 94 594 55 HOH HOH . D 4 HOH A 95 595 57 HOH HOH . D 4 HOH A 96 596 58 HOH HOH . D 4 HOH A 97 597 59 HOH HOH . D 4 HOH A 98 598 60 HOH HOH . D 4 HOH A 99 599 61 HOH HOH . D 4 HOH A 100 600 62 HOH HOH . D 4 HOH A 101 601 63 HOH HOH . D 4 HOH A 102 602 64 HOH HOH . D 4 HOH A 103 603 65 HOH HOH . D 4 HOH A 104 604 66 HOH HOH . D 4 HOH A 105 605 67 HOH HOH . D 4 HOH A 106 606 70 HOH HOH . D 4 HOH A 107 607 71 HOH HOH . D 4 HOH A 108 608 74 HOH HOH . D 4 HOH A 109 609 75 HOH HOH . D 4 HOH A 110 610 76 HOH HOH . D 4 HOH A 111 611 77 HOH HOH . D 4 HOH A 112 612 78 HOH HOH . D 4 HOH A 113 613 79 HOH HOH . D 4 HOH A 114 614 80 HOH HOH . D 4 HOH A 115 615 81 HOH HOH . D 4 HOH A 116 616 83 HOH HOH . D 4 HOH A 117 617 84 HOH HOH . D 4 HOH A 118 618 86 HOH HOH . D 4 HOH A 119 619 91 HOH HOH . D 4 HOH A 120 620 92 HOH HOH . D 4 HOH A 121 621 93 HOH HOH . D 4 HOH A 122 622 96 HOH HOH . D 4 HOH A 123 623 97 HOH HOH . D 4 HOH A 124 624 98 HOH HOH . D 4 HOH A 125 625 100 HOH HOH . D 4 HOH A 126 626 101 HOH HOH . D 4 HOH A 127 627 102 HOH HOH . D 4 HOH A 128 628 103 HOH HOH . D 4 HOH A 129 629 104 HOH HOH . D 4 HOH A 130 630 106 HOH HOH . D 4 HOH A 131 631 110 HOH HOH . D 4 HOH A 132 632 112 HOH HOH . D 4 HOH A 133 633 115 HOH HOH . D 4 HOH A 134 634 116 HOH HOH . D 4 HOH A 135 635 117 HOH HOH . D 4 HOH A 136 636 118 HOH HOH . D 4 HOH A 137 637 119 HOH HOH . D 4 HOH A 138 638 122 HOH HOH . D 4 HOH A 139 639 123 HOH HOH . D 4 HOH A 140 640 124 HOH HOH . D 4 HOH A 141 641 126 HOH HOH . D 4 HOH A 142 642 127 HOH HOH . D 4 HOH A 143 643 130 HOH HOH . D 4 HOH A 144 644 131 HOH HOH . D 4 HOH A 145 645 132 HOH HOH . D 4 HOH A 146 646 133 HOH HOH . D 4 HOH A 147 647 135 HOH HOH . D 4 HOH A 148 648 136 HOH HOH . D 4 HOH A 149 649 138 HOH HOH . D 4 HOH A 150 650 139 HOH HOH . D 4 HOH A 151 651 140 HOH HOH . D 4 HOH A 152 652 141 HOH HOH . D 4 HOH A 153 653 142 HOH HOH . D 4 HOH A 154 654 143 HOH HOH . D 4 HOH A 155 655 144 HOH HOH . D 4 HOH A 156 656 145 HOH HOH . D 4 HOH A 157 657 146 HOH HOH . D 4 HOH A 158 658 147 HOH HOH . D 4 HOH A 159 659 148 HOH HOH . D 4 HOH A 160 660 150 HOH HOH . D 4 HOH A 161 661 151 HOH HOH . D 4 HOH A 162 662 152 HOH HOH . D 4 HOH A 163 663 153 HOH HOH . D 4 HOH A 164 664 154 HOH HOH . D 4 HOH A 165 665 155 HOH HOH . D 4 HOH A 166 666 156 HOH HOH . D 4 HOH A 167 667 158 HOH HOH . D 4 HOH A 168 668 159 HOH HOH . D 4 HOH A 169 669 160 HOH HOH . D 4 HOH A 170 670 161 HOH HOH . D 4 HOH A 171 671 163 HOH HOH . D 4 HOH A 172 672 164 HOH HOH . D 4 HOH A 173 673 166 HOH HOH . D 4 HOH A 174 674 167 HOH HOH . D 4 HOH A 175 675 169 HOH HOH . D 4 HOH A 176 676 170 HOH HOH . D 4 HOH A 177 677 171 HOH HOH . D 4 HOH A 178 678 173 HOH HOH . D 4 HOH A 179 679 174 HOH HOH . D 4 HOH A 180 680 175 HOH HOH . D 4 HOH A 181 681 176 HOH HOH . D 4 HOH A 182 682 177 HOH HOH . D 4 HOH A 183 683 178 HOH HOH . D 4 HOH A 184 684 179 HOH HOH . D 4 HOH A 185 685 182 HOH HOH . D 4 HOH A 186 686 183 HOH HOH . D 4 HOH A 187 687 184 HOH HOH . D 4 HOH A 188 688 185 HOH HOH . D 4 HOH A 189 689 187 HOH HOH . D 4 HOH A 190 690 188 HOH HOH . D 4 HOH A 191 691 189 HOH HOH . D 4 HOH A 192 692 190 HOH HOH . D 4 HOH A 193 693 191 HOH HOH . D 4 HOH A 194 694 192 HOH HOH . D 4 HOH A 195 695 193 HOH HOH . D 4 HOH A 196 696 194 HOH HOH . D 4 HOH A 197 697 195 HOH HOH . D 4 HOH A 198 698 196 HOH HOH . D 4 HOH A 199 699 197 HOH HOH . D 4 HOH A 200 700 198 HOH HOH . D 4 HOH A 201 701 199 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 22.322 _atom_site.Cartn_y -22.322 _atom_site.Cartn_z 22.322 _atom_site.occupancy 0.33 _atom_site.B_iso_or_equiv 51.14 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #