data_4X9P # _model_server_result.job_id pWAsC4dZv4xILSfeK_c4ww _model_server_result.datetime_utc '2024-12-21 12:33:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x9p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 4X9P # _exptl.entry_id 4X9P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4X9P _cell.length_a 48.315 _cell.length_b 63.274 _cell.length_c 117.334 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X9P _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 137 A CYS 133 1_555 A SG CYS 266 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc1 A O GLY 54 A GLY 50 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc2 A O VAL 55 A VAL 51 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc3 A OE1 GLU 57 A GLU 53 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc4 A O GLY 206 A GLY 202 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc5 A O ARG 209 A ARG 205 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc6 A O GLY 211 A GLY 207 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc7 A OG SER 238 A SER 234 1_555 B CA CA . A CA 401 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc8 A OE1 GLU 251 A GLU 247 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc9 A OE2 GLU 251 A GLU 247 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc10 A O MET 282 A MET 278 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc11 A O GLY 284 A GLY 280 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc12 A O GLY 286 A GLY 282 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc13 A OD1 ASP 326 A ASP 322 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc14 A OD2 ASP 326 A ASP 322 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc15 B CA CA . A CA 401 1_555 F O HOH . A HOH 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc16 C CA CA . A CA 402 1_555 F O HOH . A HOH 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4X9P _atom_sites.fract_transf_matrix[1][1] 0.020698 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015804 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008523 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 401 1 CA CA . C 2 CA A 1 402 2 CA CA . D 2 CA A 1 403 3 CA CA . E 3 CL A 1 404 4 CL CL . F 4 HOH A 1 501 150 HOH HOH . F 4 HOH A 2 502 106 HOH HOH . F 4 HOH A 3 503 103 HOH HOH . F 4 HOH A 4 504 259 HOH HOH . F 4 HOH A 5 505 154 HOH HOH . F 4 HOH A 6 506 34 HOH HOH . F 4 HOH A 7 507 253 HOH HOH . F 4 HOH A 8 508 89 HOH HOH . F 4 HOH A 9 509 13 HOH HOH . F 4 HOH A 10 510 188 HOH HOH . F 4 HOH A 11 511 98 HOH HOH . F 4 HOH A 12 512 109 HOH HOH . F 4 HOH A 13 513 133 HOH HOH . F 4 HOH A 14 514 59 HOH HOH . F 4 HOH A 15 515 136 HOH HOH . F 4 HOH A 16 516 121 HOH HOH . F 4 HOH A 17 517 85 HOH HOH . F 4 HOH A 18 518 179 HOH HOH . F 4 HOH A 19 519 236 HOH HOH . F 4 HOH A 20 520 258 HOH HOH . F 4 HOH A 21 521 66 HOH HOH . F 4 HOH A 22 522 118 HOH HOH . F 4 HOH A 23 523 226 HOH HOH . F 4 HOH A 24 524 114 HOH HOH . F 4 HOH A 25 525 248 HOH HOH . F 4 HOH A 26 526 16 HOH HOH . F 4 HOH A 27 527 28 HOH HOH . F 4 HOH A 28 528 17 HOH HOH . F 4 HOH A 29 529 25 HOH HOH . F 4 HOH A 30 530 92 HOH HOH . F 4 HOH A 31 531 197 HOH HOH . F 4 HOH A 32 532 37 HOH HOH . F 4 HOH A 33 533 57 HOH HOH . F 4 HOH A 34 534 156 HOH HOH . F 4 HOH A 35 535 67 HOH HOH . F 4 HOH A 36 536 186 HOH HOH . F 4 HOH A 37 537 157 HOH HOH . F 4 HOH A 38 538 249 HOH HOH . F 4 HOH A 39 539 52 HOH HOH . F 4 HOH A 40 540 69 HOH HOH . F 4 HOH A 41 541 142 HOH HOH . F 4 HOH A 42 542 149 HOH HOH . F 4 HOH A 43 543 141 HOH HOH . F 4 HOH A 44 544 53 HOH HOH . F 4 HOH A 45 545 242 HOH HOH . F 4 HOH A 46 546 198 HOH HOH . F 4 HOH A 47 547 187 HOH HOH . F 4 HOH A 48 548 99 HOH HOH . F 4 HOH A 49 549 152 HOH HOH . F 4 HOH A 50 550 126 HOH HOH . F 4 HOH A 51 551 155 HOH HOH . F 4 HOH A 52 552 30 HOH HOH . F 4 HOH A 53 553 243 HOH HOH . F 4 HOH A 54 554 104 HOH HOH . F 4 HOH A 55 555 206 HOH HOH . F 4 HOH A 56 556 20 HOH HOH . F 4 HOH A 57 557 185 HOH HOH . F 4 HOH A 58 558 31 HOH HOH . F 4 HOH A 59 559 234 HOH HOH . F 4 HOH A 60 560 86 HOH HOH . F 4 HOH A 61 561 250 HOH HOH . F 4 HOH A 62 562 22 HOH HOH . F 4 HOH A 63 563 68 HOH HOH . F 4 HOH A 64 564 75 HOH HOH . F 4 HOH A 65 565 32 HOH HOH . F 4 HOH A 66 566 115 HOH HOH . F 4 HOH A 67 567 124 HOH HOH . F 4 HOH A 68 568 237 HOH HOH . F 4 HOH A 69 569 143 HOH HOH . F 4 HOH A 70 570 79 HOH HOH . F 4 HOH A 71 571 189 HOH HOH . F 4 HOH A 72 572 254 HOH HOH . F 4 HOH A 73 573 132 HOH HOH . F 4 HOH A 74 574 200 HOH HOH . F 4 HOH A 75 575 264 HOH HOH . F 4 HOH A 76 576 146 HOH HOH . F 4 HOH A 77 577 77 HOH HOH . F 4 HOH A 78 578 70 HOH HOH . F 4 HOH A 79 579 54 HOH HOH . F 4 HOH A 80 580 63 HOH HOH . F 4 HOH A 81 581 207 HOH HOH . F 4 HOH A 82 582 214 HOH HOH . F 4 HOH A 83 583 135 HOH HOH . F 4 HOH A 84 584 252 HOH HOH . F 4 HOH A 85 585 223 HOH HOH . F 4 HOH A 86 586 76 HOH HOH . F 4 HOH A 87 587 158 HOH HOH . F 4 HOH A 88 588 72 HOH HOH . F 4 HOH A 89 589 224 HOH HOH . F 4 HOH A 90 590 255 HOH HOH . F 4 HOH A 91 591 139 HOH HOH . F 4 HOH A 92 592 1 HOH HOH . F 4 HOH A 93 593 2 HOH HOH . F 4 HOH A 94 594 3 HOH HOH . F 4 HOH A 95 595 4 HOH HOH . F 4 HOH A 96 596 5 HOH HOH . F 4 HOH A 97 597 6 HOH HOH . F 4 HOH A 98 598 7 HOH HOH . F 4 HOH A 99 599 8 HOH HOH . F 4 HOH A 100 600 9 HOH HOH . F 4 HOH A 101 601 10 HOH HOH . F 4 HOH A 102 602 11 HOH HOH . F 4 HOH A 103 603 12 HOH HOH . F 4 HOH A 104 604 14 HOH HOH . F 4 HOH A 105 605 15 HOH HOH . F 4 HOH A 106 606 18 HOH HOH . F 4 HOH A 107 607 19 HOH HOH . F 4 HOH A 108 608 21 HOH HOH . F 4 HOH A 109 609 23 HOH HOH . F 4 HOH A 110 610 24 HOH HOH . F 4 HOH A 111 611 26 HOH HOH . F 4 HOH A 112 612 27 HOH HOH . F 4 HOH A 113 613 29 HOH HOH . F 4 HOH A 114 614 33 HOH HOH . F 4 HOH A 115 615 35 HOH HOH . F 4 HOH A 116 616 36 HOH HOH . F 4 HOH A 117 617 38 HOH HOH . F 4 HOH A 118 618 39 HOH HOH . F 4 HOH A 119 619 40 HOH HOH . F 4 HOH A 120 620 41 HOH HOH . F 4 HOH A 121 621 42 HOH HOH . F 4 HOH A 122 622 43 HOH HOH . F 4 HOH A 123 623 44 HOH HOH . F 4 HOH A 124 624 45 HOH HOH . F 4 HOH A 125 625 46 HOH HOH . F 4 HOH A 126 626 47 HOH HOH . F 4 HOH A 127 627 48 HOH HOH . F 4 HOH A 128 628 49 HOH HOH . F 4 HOH A 129 629 50 HOH HOH . F 4 HOH A 130 630 51 HOH HOH . F 4 HOH A 131 631 55 HOH HOH . F 4 HOH A 132 632 56 HOH HOH . F 4 HOH A 133 633 58 HOH HOH . F 4 HOH A 134 634 60 HOH HOH . F 4 HOH A 135 635 61 HOH HOH . F 4 HOH A 136 636 62 HOH HOH . F 4 HOH A 137 637 64 HOH HOH . F 4 HOH A 138 638 65 HOH HOH . F 4 HOH A 139 639 71 HOH HOH . F 4 HOH A 140 640 73 HOH HOH . F 4 HOH A 141 641 74 HOH HOH . F 4 HOH A 142 642 78 HOH HOH . F 4 HOH A 143 643 80 HOH HOH . F 4 HOH A 144 644 81 HOH HOH . F 4 HOH A 145 645 82 HOH HOH . F 4 HOH A 146 646 83 HOH HOH . F 4 HOH A 147 647 84 HOH HOH . F 4 HOH A 148 648 87 HOH HOH . F 4 HOH A 149 649 88 HOH HOH . F 4 HOH A 150 650 90 HOH HOH . F 4 HOH A 151 651 91 HOH HOH . F 4 HOH A 152 652 93 HOH HOH . F 4 HOH A 153 653 94 HOH HOH . F 4 HOH A 154 654 95 HOH HOH . F 4 HOH A 155 655 96 HOH HOH . F 4 HOH A 156 656 97 HOH HOH . F 4 HOH A 157 657 100 HOH HOH . F 4 HOH A 158 658 101 HOH HOH . F 4 HOH A 159 659 102 HOH HOH . F 4 HOH A 160 660 105 HOH HOH . F 4 HOH A 161 661 107 HOH HOH . F 4 HOH A 162 662 108 HOH HOH . F 4 HOH A 163 663 110 HOH HOH . F 4 HOH A 164 664 111 HOH HOH . F 4 HOH A 165 665 112 HOH HOH . F 4 HOH A 166 666 113 HOH HOH . F 4 HOH A 167 667 116 HOH HOH . F 4 HOH A 168 668 117 HOH HOH . F 4 HOH A 169 669 119 HOH HOH . F 4 HOH A 170 670 120 HOH HOH . F 4 HOH A 171 671 122 HOH HOH . F 4 HOH A 172 672 123 HOH HOH . F 4 HOH A 173 673 125 HOH HOH . F 4 HOH A 174 674 127 HOH HOH . F 4 HOH A 175 675 128 HOH HOH . F 4 HOH A 176 676 129 HOH HOH . F 4 HOH A 177 677 130 HOH HOH . F 4 HOH A 178 678 131 HOH HOH . F 4 HOH A 179 679 134 HOH HOH . F 4 HOH A 180 680 137 HOH HOH . F 4 HOH A 181 681 138 HOH HOH . F 4 HOH A 182 682 140 HOH HOH . F 4 HOH A 183 683 144 HOH HOH . F 4 HOH A 184 684 145 HOH HOH . F 4 HOH A 185 685 147 HOH HOH . F 4 HOH A 186 686 148 HOH HOH . F 4 HOH A 187 687 151 HOH HOH . F 4 HOH A 188 688 153 HOH HOH . F 4 HOH A 189 689 159 HOH HOH . F 4 HOH A 190 690 160 HOH HOH . F 4 HOH A 191 691 161 HOH HOH . F 4 HOH A 192 692 162 HOH HOH . F 4 HOH A 193 693 163 HOH HOH . F 4 HOH A 194 694 164 HOH HOH . F 4 HOH A 195 695 165 HOH HOH . F 4 HOH A 196 696 166 HOH HOH . F 4 HOH A 197 697 167 HOH HOH . F 4 HOH A 198 698 168 HOH HOH . F 4 HOH A 199 699 169 HOH HOH . F 4 HOH A 200 700 170 HOH HOH . F 4 HOH A 201 701 171 HOH HOH . F 4 HOH A 202 702 172 HOH HOH . F 4 HOH A 203 703 173 HOH HOH . F 4 HOH A 204 704 174 HOH HOH . F 4 HOH A 205 705 175 HOH HOH . F 4 HOH A 206 706 176 HOH HOH . F 4 HOH A 207 707 177 HOH HOH . F 4 HOH A 208 708 178 HOH HOH . F 4 HOH A 209 709 180 HOH HOH . F 4 HOH A 210 710 181 HOH HOH . F 4 HOH A 211 711 182 HOH HOH . F 4 HOH A 212 712 183 HOH HOH . F 4 HOH A 213 713 184 HOH HOH . F 4 HOH A 214 714 190 HOH HOH . F 4 HOH A 215 715 191 HOH HOH . F 4 HOH A 216 716 192 HOH HOH . F 4 HOH A 217 717 193 HOH HOH . F 4 HOH A 218 718 194 HOH HOH . F 4 HOH A 219 719 195 HOH HOH . F 4 HOH A 220 720 196 HOH HOH . F 4 HOH A 221 721 199 HOH HOH . F 4 HOH A 222 722 201 HOH HOH . F 4 HOH A 223 723 202 HOH HOH . F 4 HOH A 224 724 203 HOH HOH . F 4 HOH A 225 725 204 HOH HOH . F 4 HOH A 226 726 205 HOH HOH . F 4 HOH A 227 727 208 HOH HOH . F 4 HOH A 228 728 209 HOH HOH . F 4 HOH A 229 729 210 HOH HOH . F 4 HOH A 230 730 211 HOH HOH . F 4 HOH A 231 731 212 HOH HOH . F 4 HOH A 232 732 213 HOH HOH . F 4 HOH A 233 733 215 HOH HOH . F 4 HOH A 234 734 216 HOH HOH . F 4 HOH A 235 735 217 HOH HOH . F 4 HOH A 236 736 218 HOH HOH . F 4 HOH A 237 737 219 HOH HOH . F 4 HOH A 238 738 220 HOH HOH . F 4 HOH A 239 739 221 HOH HOH . F 4 HOH A 240 740 222 HOH HOH . F 4 HOH A 241 741 225 HOH HOH . F 4 HOH A 242 742 227 HOH HOH . F 4 HOH A 243 743 228 HOH HOH . F 4 HOH A 244 744 229 HOH HOH . F 4 HOH A 245 745 230 HOH HOH . F 4 HOH A 246 746 231 HOH HOH . F 4 HOH A 247 747 232 HOH HOH . F 4 HOH A 248 748 233 HOH HOH . F 4 HOH A 249 749 235 HOH HOH . F 4 HOH A 250 750 238 HOH HOH . F 4 HOH A 251 751 239 HOH HOH . F 4 HOH A 252 752 240 HOH HOH . F 4 HOH A 253 753 241 HOH HOH . F 4 HOH A 254 754 244 HOH HOH . F 4 HOH A 255 755 245 HOH HOH . F 4 HOH A 256 756 246 HOH HOH . F 4 HOH A 257 757 247 HOH HOH . F 4 HOH A 258 758 251 HOH HOH . F 4 HOH A 259 759 256 HOH HOH . F 4 HOH A 260 760 257 HOH HOH . F 4 HOH A 261 761 260 HOH HOH . F 4 HOH A 262 762 261 HOH HOH . F 4 HOH A 263 763 262 HOH HOH . F 4 HOH A 264 764 263 HOH HOH . F 4 HOH A 265 765 265 HOH HOH . F 4 HOH A 266 766 266 HOH HOH . F 4 HOH A 267 767 267 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -26.629 _atom_site.Cartn_y 63.628 _atom_site.Cartn_z 57.192 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 62.53 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #