data_4X9X # _model_server_result.job_id nxVQTEXUo_k1Fw6ZzJg12Q _model_server_result.datetime_utc '2024-11-05 00:35:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4x9x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 4X9X # _exptl.entry_id 4X9X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.49 _cell.angle_gamma 90 _cell.entry_id 4X9X _cell.length_a 167.343 _cell.length_b 41.872 _cell.length_c 38.573 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4X9X _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 4X9X _atom_sites.fract_transf_matrix[1][1] 0.005976 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000469 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023882 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026005 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLA A 1 301 1 OLA OLA . C 3 EDO A 1 302 1 EDO EDO . D 3 EDO A 1 303 2 EDO EDO . E 3 EDO A 1 304 3 EDO EDO . F 4 HOH A 1 401 260 HOH HOH . F 4 HOH A 2 402 237 HOH HOH . F 4 HOH A 3 403 191 HOH HOH . F 4 HOH A 4 404 263 HOH HOH . F 4 HOH A 5 405 102 HOH HOH . F 4 HOH A 6 406 208 HOH HOH . F 4 HOH A 7 407 16 HOH HOH . F 4 HOH A 8 408 10 HOH HOH . F 4 HOH A 9 409 267 HOH HOH . F 4 HOH A 10 410 203 HOH HOH . F 4 HOH A 11 411 193 HOH HOH . F 4 HOH A 12 412 27 HOH HOH . F 4 HOH A 13 413 53 HOH HOH . F 4 HOH A 14 414 239 HOH HOH . F 4 HOH A 15 415 44 HOH HOH . F 4 HOH A 16 416 262 HOH HOH . F 4 HOH A 17 417 215 HOH HOH . F 4 HOH A 18 418 167 HOH HOH . F 4 HOH A 19 419 95 HOH HOH . F 4 HOH A 20 420 242 HOH HOH . F 4 HOH A 21 421 192 HOH HOH . F 4 HOH A 22 422 148 HOH HOH . F 4 HOH A 23 423 220 HOH HOH . F 4 HOH A 24 424 244 HOH HOH . F 4 HOH A 25 425 51 HOH HOH . F 4 HOH A 26 426 173 HOH HOH . F 4 HOH A 27 427 195 HOH HOH . F 4 HOH A 28 428 105 HOH HOH . F 4 HOH A 29 429 108 HOH HOH . F 4 HOH A 30 430 31 HOH HOH . F 4 HOH A 31 431 52 HOH HOH . F 4 HOH A 32 432 221 HOH HOH . F 4 HOH A 33 433 24 HOH HOH . F 4 HOH A 34 434 113 HOH HOH . F 4 HOH A 35 435 176 HOH HOH . F 4 HOH A 36 436 169 HOH HOH . F 4 HOH A 37 437 11 HOH HOH . F 4 HOH A 38 438 59 HOH HOH . F 4 HOH A 39 439 5 HOH HOH . F 4 HOH A 40 440 77 HOH HOH . F 4 HOH A 41 441 118 HOH HOH . F 4 HOH A 42 442 69 HOH HOH . F 4 HOH A 43 443 247 HOH HOH . F 4 HOH A 44 444 19 HOH HOH . F 4 HOH A 45 445 162 HOH HOH . F 4 HOH A 46 446 112 HOH HOH . F 4 HOH A 47 447 12 HOH HOH . F 4 HOH A 48 448 45 HOH HOH . F 4 HOH A 49 449 41 HOH HOH . F 4 HOH A 50 450 34 HOH HOH . F 4 HOH A 51 451 13 HOH HOH . F 4 HOH A 52 452 2 HOH HOH . F 4 HOH A 53 453 66 HOH HOH . F 4 HOH A 54 454 30 HOH HOH . F 4 HOH A 55 455 46 HOH HOH . F 4 HOH A 56 456 211 HOH HOH . F 4 HOH A 57 457 103 HOH HOH . F 4 HOH A 58 458 250 HOH HOH . F 4 HOH A 59 459 18 HOH HOH . F 4 HOH A 60 460 96 HOH HOH . F 4 HOH A 61 461 149 HOH HOH . F 4 HOH A 62 462 109 HOH HOH . F 4 HOH A 63 463 88 HOH HOH . F 4 HOH A 64 464 60 HOH HOH . F 4 HOH A 65 465 135 HOH HOH . F 4 HOH A 66 466 35 HOH HOH . F 4 HOH A 67 467 49 HOH HOH . F 4 HOH A 68 468 110 HOH HOH . F 4 HOH A 69 469 283 HOH HOH . F 4 HOH A 70 470 143 HOH HOH . F 4 HOH A 71 471 231 HOH HOH . F 4 HOH A 72 472 6 HOH HOH . F 4 HOH A 73 473 224 HOH HOH . F 4 HOH A 74 474 72 HOH HOH . F 4 HOH A 75 475 40 HOH HOH . F 4 HOH A 76 476 97 HOH HOH . F 4 HOH A 77 477 99 HOH HOH . F 4 HOH A 78 478 266 HOH HOH . F 4 HOH A 79 479 196 HOH HOH . F 4 HOH A 80 480 226 HOH HOH . F 4 HOH A 81 481 217 HOH HOH . F 4 HOH A 82 482 238 HOH HOH . F 4 HOH A 83 483 198 HOH HOH . F 4 HOH A 84 484 165 HOH HOH . F 4 HOH A 85 485 87 HOH HOH . F 4 HOH A 86 486 58 HOH HOH . F 4 HOH A 87 487 227 HOH HOH . F 4 HOH A 88 488 142 HOH HOH . F 4 HOH A 89 489 240 HOH HOH . F 4 HOH A 90 490 32 HOH HOH . F 4 HOH A 91 491 235 HOH HOH . F 4 HOH A 92 492 207 HOH HOH . F 4 HOH A 93 493 258 HOH HOH . F 4 HOH A 94 494 157 HOH HOH . F 4 HOH A 95 495 94 HOH HOH . F 4 HOH A 96 496 131 HOH HOH . F 4 HOH A 97 497 180 HOH HOH . F 4 HOH A 98 498 163 HOH HOH . F 4 HOH A 99 499 197 HOH HOH . F 4 HOH A 100 500 150 HOH HOH . F 4 HOH A 101 501 241 HOH HOH . F 4 HOH A 102 502 265 HOH HOH . F 4 HOH A 103 503 168 HOH HOH . F 4 HOH A 104 504 154 HOH HOH . F 4 HOH A 105 505 186 HOH HOH . F 4 HOH A 106 506 282 HOH HOH . F 4 HOH A 107 507 122 HOH HOH . F 4 HOH A 108 508 151 HOH HOH . F 4 HOH A 109 509 184 HOH HOH . F 4 HOH A 110 510 277 HOH HOH . F 4 HOH A 111 511 236 HOH HOH . F 4 HOH A 112 512 129 HOH HOH . F 4 HOH A 113 513 156 HOH HOH . F 4 HOH A 114 514 218 HOH HOH . F 4 HOH A 115 515 213 HOH HOH . F 4 HOH A 116 516 222 HOH HOH . F 4 HOH A 117 517 158 HOH HOH . F 4 HOH A 118 518 281 HOH HOH . F 4 HOH A 119 519 233 HOH HOH . F 4 HOH A 120 520 1 HOH HOH . F 4 HOH A 121 521 3 HOH HOH . F 4 HOH A 122 522 4 HOH HOH . F 4 HOH A 123 523 7 HOH HOH . F 4 HOH A 124 524 8 HOH HOH . F 4 HOH A 125 525 9 HOH HOH . F 4 HOH A 126 526 14 HOH HOH . F 4 HOH A 127 527 15 HOH HOH . F 4 HOH A 128 528 17 HOH HOH . F 4 HOH A 129 529 20 HOH HOH . F 4 HOH A 130 530 21 HOH HOH . F 4 HOH A 131 531 22 HOH HOH . F 4 HOH A 132 532 23 HOH HOH . F 4 HOH A 133 533 25 HOH HOH . F 4 HOH A 134 534 26 HOH HOH . F 4 HOH A 135 535 28 HOH HOH . F 4 HOH A 136 536 29 HOH HOH . F 4 HOH A 137 537 33 HOH HOH . F 4 HOH A 138 538 36 HOH HOH . F 4 HOH A 139 539 37 HOH HOH . F 4 HOH A 140 540 38 HOH HOH . F 4 HOH A 141 541 39 HOH HOH . F 4 HOH A 142 542 42 HOH HOH . F 4 HOH A 143 543 43 HOH HOH . F 4 HOH A 144 544 47 HOH HOH . F 4 HOH A 145 545 48 HOH HOH . F 4 HOH A 146 546 50 HOH HOH . F 4 HOH A 147 547 54 HOH HOH . F 4 HOH A 148 548 55 HOH HOH . F 4 HOH A 149 549 56 HOH HOH . F 4 HOH A 150 550 57 HOH HOH . F 4 HOH A 151 551 61 HOH HOH . F 4 HOH A 152 552 62 HOH HOH . F 4 HOH A 153 553 63 HOH HOH . F 4 HOH A 154 554 64 HOH HOH . F 4 HOH A 155 555 65 HOH HOH . F 4 HOH A 156 556 67 HOH HOH . F 4 HOH A 157 557 68 HOH HOH . F 4 HOH A 158 558 70 HOH HOH . F 4 HOH A 159 559 71 HOH HOH . F 4 HOH A 160 560 73 HOH HOH . F 4 HOH A 161 561 74 HOH HOH . F 4 HOH A 162 562 75 HOH HOH . F 4 HOH A 163 563 76 HOH HOH . F 4 HOH A 164 564 78 HOH HOH . F 4 HOH A 165 565 79 HOH HOH . F 4 HOH A 166 566 80 HOH HOH . F 4 HOH A 167 567 81 HOH HOH . F 4 HOH A 168 568 82 HOH HOH . F 4 HOH A 169 569 83 HOH HOH . F 4 HOH A 170 570 84 HOH HOH . F 4 HOH A 171 571 85 HOH HOH . F 4 HOH A 172 572 86 HOH HOH . F 4 HOH A 173 573 89 HOH HOH . F 4 HOH A 174 574 90 HOH HOH . F 4 HOH A 175 575 91 HOH HOH . F 4 HOH A 176 576 92 HOH HOH . F 4 HOH A 177 577 93 HOH HOH . F 4 HOH A 178 578 98 HOH HOH . F 4 HOH A 179 579 100 HOH HOH . F 4 HOH A 180 580 101 HOH HOH . F 4 HOH A 181 581 104 HOH HOH . F 4 HOH A 182 582 106 HOH HOH . F 4 HOH A 183 583 107 HOH HOH . F 4 HOH A 184 584 111 HOH HOH . F 4 HOH A 185 585 114 HOH HOH . F 4 HOH A 186 586 115 HOH HOH . F 4 HOH A 187 587 116 HOH HOH . F 4 HOH A 188 588 117 HOH HOH . F 4 HOH A 189 589 119 HOH HOH . F 4 HOH A 190 590 120 HOH HOH . F 4 HOH A 191 591 121 HOH HOH . F 4 HOH A 192 592 123 HOH HOH . F 4 HOH A 193 593 124 HOH HOH . F 4 HOH A 194 594 125 HOH HOH . F 4 HOH A 195 595 126 HOH HOH . F 4 HOH A 196 596 127 HOH HOH . F 4 HOH A 197 597 128 HOH HOH . F 4 HOH A 198 598 130 HOH HOH . F 4 HOH A 199 599 132 HOH HOH . F 4 HOH A 200 600 133 HOH HOH . F 4 HOH A 201 601 134 HOH HOH . F 4 HOH A 202 602 136 HOH HOH . F 4 HOH A 203 603 137 HOH HOH . F 4 HOH A 204 604 138 HOH HOH . F 4 HOH A 205 605 139 HOH HOH . F 4 HOH A 206 606 140 HOH HOH . F 4 HOH A 207 607 141 HOH HOH . F 4 HOH A 208 608 144 HOH HOH . F 4 HOH A 209 609 145 HOH HOH . F 4 HOH A 210 610 146 HOH HOH . F 4 HOH A 211 611 147 HOH HOH . F 4 HOH A 212 612 152 HOH HOH . F 4 HOH A 213 613 153 HOH HOH . F 4 HOH A 214 614 155 HOH HOH . F 4 HOH A 215 615 159 HOH HOH . F 4 HOH A 216 616 160 HOH HOH . F 4 HOH A 217 617 161 HOH HOH . F 4 HOH A 218 618 164 HOH HOH . F 4 HOH A 219 619 166 HOH HOH . F 4 HOH A 220 620 170 HOH HOH . F 4 HOH A 221 621 171 HOH HOH . F 4 HOH A 222 622 172 HOH HOH . F 4 HOH A 223 623 174 HOH HOH . F 4 HOH A 224 624 175 HOH HOH . F 4 HOH A 225 625 177 HOH HOH . F 4 HOH A 226 626 178 HOH HOH . F 4 HOH A 227 627 179 HOH HOH . F 4 HOH A 228 628 181 HOH HOH . F 4 HOH A 229 629 182 HOH HOH . F 4 HOH A 230 630 183 HOH HOH . F 4 HOH A 231 631 185 HOH HOH . F 4 HOH A 232 632 187 HOH HOH . F 4 HOH A 233 633 188 HOH HOH . F 4 HOH A 234 634 189 HOH HOH . F 4 HOH A 235 635 190 HOH HOH . F 4 HOH A 236 636 194 HOH HOH . F 4 HOH A 237 637 199 HOH HOH . F 4 HOH A 238 638 200 HOH HOH . F 4 HOH A 239 639 201 HOH HOH . F 4 HOH A 240 640 202 HOH HOH . F 4 HOH A 241 641 204 HOH HOH . F 4 HOH A 242 642 205 HOH HOH . F 4 HOH A 243 643 206 HOH HOH . F 4 HOH A 244 644 209 HOH HOH . F 4 HOH A 245 645 210 HOH HOH . F 4 HOH A 246 646 212 HOH HOH . F 4 HOH A 247 647 214 HOH HOH . F 4 HOH A 248 648 216 HOH HOH . F 4 HOH A 249 649 219 HOH HOH . F 4 HOH A 250 650 223 HOH HOH . F 4 HOH A 251 651 225 HOH HOH . F 4 HOH A 252 652 228 HOH HOH . F 4 HOH A 253 653 229 HOH HOH . F 4 HOH A 254 654 230 HOH HOH . F 4 HOH A 255 655 232 HOH HOH . F 4 HOH A 256 656 234 HOH HOH . F 4 HOH A 257 657 243 HOH HOH . F 4 HOH A 258 658 245 HOH HOH . F 4 HOH A 259 659 246 HOH HOH . F 4 HOH A 260 660 248 HOH HOH . F 4 HOH A 261 661 249 HOH HOH . F 4 HOH A 262 662 251 HOH HOH . F 4 HOH A 263 663 252 HOH HOH . F 4 HOH A 264 664 253 HOH HOH . F 4 HOH A 265 665 254 HOH HOH . F 4 HOH A 266 666 255 HOH HOH . F 4 HOH A 267 667 256 HOH HOH . F 4 HOH A 268 668 257 HOH HOH . F 4 HOH A 269 669 259 HOH HOH . F 4 HOH A 270 670 261 HOH HOH . F 4 HOH A 271 671 264 HOH HOH . F 4 HOH A 272 672 268 HOH HOH . F 4 HOH A 273 673 269 HOH HOH . F 4 HOH A 274 674 270 HOH HOH . F 4 HOH A 275 675 271 HOH HOH . F 4 HOH A 276 676 272 HOH HOH . F 4 HOH A 277 677 273 HOH HOH . F 4 HOH A 278 678 274 HOH HOH . F 4 HOH A 279 679 275 HOH HOH . F 4 HOH A 280 680 276 HOH HOH . F 4 HOH A 281 681 278 HOH HOH . F 4 HOH A 282 682 279 HOH HOH . F 4 HOH A 283 683 280 HOH HOH . F 4 HOH A 284 684 284 HOH HOH . F 4 HOH A 285 685 285 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 -21.396 -20.196 39.81 1 26.61 ? C1 EDO 303 A 1 HETATM 2 O O1 EDO . . . D 3 -21.09 -19.776 38.474 1 27.87 ? O1 EDO 303 A 1 HETATM 3 C C2 EDO . . . D 3 -22.821 -20.732 39.874 1 25.48 ? C2 EDO 303 A 1 HETATM 4 O O2 EDO . . . D 3 -22.953 -21.916 39.066 1 19.38 ? O2 EDO 303 A 1 HETATM 5 H H11 EDO . . . D 3 -20.696 -20.974 40.121 1 31.93 ? H11 EDO 303 A 1 HETATM 6 H H12 EDO . . . D 3 -21.29 -19.351 40.494 1 31.93 ? H12 EDO 303 A 1 HETATM 7 H HO1 EDO . . . D 3 -20.185 -19.437 38.442 1 33.44 ? HO1 EDO 303 A 1 HETATM 8 H H21 EDO . . . D 3 -23.078 -20.966 40.909 1 30.58 ? H21 EDO 303 A 1 HETATM 9 H H22 EDO . . . D 3 -23.516 -19.968 39.519 1 30.58 ? H22 EDO 303 A 1 HETATM 10 H HO2 EDO . . . D 3 -23.862 -22.242 39.118 1 23.25 ? HO2 EDO 303 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #