data_4XAA # _model_server_result.job_id Hu_HKYiaMIS1V8rNLvSzDQ _model_server_result.datetime_utc '2025-02-28 22:49:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xaa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4XAA # _exptl.entry_id 4XAA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XAA _cell.length_a 72.119 _cell.length_b 115.144 _cell.length_c 33.864 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XAA _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 125 A HIS 125 1_555 B NI NI . A NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc2 A OD1 ASP 127 A ASP 127 1_555 B NI NI . A NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc3 A NE2 HIS 196 A HIS 196 1_555 B NI NI . A NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc4 B NI NI . A NI 301 1_555 C O HOH . A HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc5 B NI NI . A NI 301 1_555 C O HOH . A HOH 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc6 B NI NI . A NI 301 1_555 C O HOH . A HOH 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4XAA _atom_sites.fract_transf_matrix[1][1] 0.013866 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008685 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02953 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 301 250 NI NI . C 3 HOH A 1 401 287 HOH HOH . C 3 HOH A 2 402 270 HOH HOH . C 3 HOH A 3 403 254 HOH HOH . C 3 HOH A 4 404 257 HOH HOH . C 3 HOH A 5 405 265 HOH HOH . C 3 HOH A 6 406 277 HOH HOH . C 3 HOH A 7 407 301 HOH HOH . C 3 HOH A 8 408 283 HOH HOH . C 3 HOH A 9 409 263 HOH HOH . C 3 HOH A 10 410 289 HOH HOH . C 3 HOH A 11 411 314 HOH HOH . C 3 HOH A 12 412 279 HOH HOH . C 3 HOH A 13 413 269 HOH HOH . C 3 HOH A 14 414 300 HOH HOH . C 3 HOH A 15 415 295 HOH HOH . C 3 HOH A 16 416 282 HOH HOH . C 3 HOH A 17 417 251 HOH HOH . C 3 HOH A 18 418 307 HOH HOH . C 3 HOH A 19 419 302 HOH HOH . C 3 HOH A 20 420 309 HOH HOH . C 3 HOH A 21 421 252 HOH HOH . C 3 HOH A 22 422 253 HOH HOH . C 3 HOH A 23 423 255 HOH HOH . C 3 HOH A 24 424 256 HOH HOH . C 3 HOH A 25 425 258 HOH HOH . C 3 HOH A 26 426 259 HOH HOH . C 3 HOH A 27 427 260 HOH HOH . C 3 HOH A 28 428 261 HOH HOH . C 3 HOH A 29 429 262 HOH HOH . C 3 HOH A 30 430 264 HOH HOH . C 3 HOH A 31 431 266 HOH HOH . C 3 HOH A 32 432 267 HOH HOH . C 3 HOH A 33 433 268 HOH HOH . C 3 HOH A 34 434 271 HOH HOH . C 3 HOH A 35 435 272 HOH HOH . C 3 HOH A 36 436 273 HOH HOH . C 3 HOH A 37 437 274 HOH HOH . C 3 HOH A 38 438 275 HOH HOH . C 3 HOH A 39 439 276 HOH HOH . C 3 HOH A 40 440 278 HOH HOH . C 3 HOH A 41 441 280 HOH HOH . C 3 HOH A 42 442 281 HOH HOH . C 3 HOH A 43 443 284 HOH HOH . C 3 HOH A 44 444 285 HOH HOH . C 3 HOH A 45 445 286 HOH HOH . C 3 HOH A 46 446 288 HOH HOH . C 3 HOH A 47 447 290 HOH HOH . C 3 HOH A 48 448 291 HOH HOH . C 3 HOH A 49 449 292 HOH HOH . C 3 HOH A 50 450 293 HOH HOH . C 3 HOH A 51 451 294 HOH HOH . C 3 HOH A 52 452 296 HOH HOH . C 3 HOH A 53 453 297 HOH HOH . C 3 HOH A 54 454 298 HOH HOH . C 3 HOH A 55 455 299 HOH HOH . C 3 HOH A 56 456 303 HOH HOH . C 3 HOH A 57 457 305 HOH HOH . C 3 HOH A 58 458 306 HOH HOH . C 3 HOH A 59 459 308 HOH HOH . C 3 HOH A 60 460 310 HOH HOH . C 3 HOH A 61 461 311 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 40.874 _atom_site.Cartn_y 39.603 _atom_site.Cartn_z 16.543 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 58.16 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 361 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #