data_4XAR
#
_model_server_result.job_id            zPiPhIgNrZp-6tM2ukOKEQ 
_model_server_result.datetime_utc      '2024-12-23 07:02:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xar 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    4XAR 
#
_exptl.entry_id    4XAR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              185.177 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1S,2S,5R,6S)-2-aminobicyclo[3.1.0]hexane-2,6-dicarboxylic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4XAR 
_cell.length_a            80.338 
_cell.length_b            80.338 
_cell.length_c            155.688 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XAR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 51.896 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 59 A CYS 57 1_555 A SG CYS 101 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf2 A SG CYS 363 A CYS 361 1_555 A SG CYS 375 A CYS 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf3 A SG CYS 414 A CYS 412 1_555 A SG CYS 421 A CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
#
_chem_comp.formula           'C8 H11 N O4' 
_chem_comp.formula_weight    185.177 
_chem_comp.id                40F 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1S,2S,5R,6S)-2-aminobicyclo[3.1.0]hexane-2,6-dicarboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O C 40F doub 1 n n 
N C1 40F sing 2 n n 
C C1 40F sing 3 n n 
C O1 40F sing 4 n n 
C1 C2 40F sing 5 n n 
C1 C7 40F sing 6 n n 
C2 C3 40F sing 7 n n 
C2 C5 40F sing 8 n n 
C7 C6 40F sing 9 n n 
C3 C4 40F sing 10 n n 
C3 C5 40F sing 11 n n 
C4 O3 40F doub 12 n n 
C4 O2 40F sing 13 n n 
C5 C6 40F sing 14 n n 
O1 H1 40F sing 15 n n 
C7 H2 40F sing 16 n n 
C7 H3 40F sing 17 n n 
O2 H4 40F sing 18 n n 
C6 H5 40F sing 19 n n 
C6 H6 40F sing 20 n n 
C5 H7 40F sing 21 n n 
C3 H8 40F sing 22 n n 
C2 H9 40F sing 23 n n 
N H10 40F sing 24 n n 
N H11 40F sing 25 n n 
#
_atom_sites.entry_id                     4XAR 
_atom_sites.fract_transf_matrix[1][1]    0.012447 
_atom_sites.fract_transf_matrix[1][2]    0.007187 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014373 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006423 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 40F A 1 601 1 40F SX1 . 
C 3 IOD A 1 602 1 IOD IOD . 
D 3 IOD A 1 603 2 IOD IOD . 
E 3 IOD A 1 604 3 IOD IOD . 
F 3 IOD A 1 605 4 IOD IOD . 
G 3 IOD A 1 606 5 IOD IOD . 
H 3 IOD A 1 607 6 IOD IOD . 
I 3 IOD A 1 608 7 IOD IOD . 
J 3 IOD A 1 609 8 IOD IOD . 
K 4 HOH A 1 701 133 HOH HOH . 
K 4 HOH A 2 702 147 HOH HOH . 
K 4 HOH A 3 703 257 HOH HOH . 
K 4 HOH A 4 704 309 HOH HOH . 
K 4 HOH A 5 705 207 HOH HOH . 
K 4 HOH A 6 706 156 HOH HOH . 
K 4 HOH A 7 707 93 HOH HOH . 
K 4 HOH A 8 708 45 HOH HOH . 
K 4 HOH A 9 709 128 HOH HOH . 
K 4 HOH A 10 710 157 HOH HOH . 
K 4 HOH A 11 711 154 HOH HOH . 
K 4 HOH A 12 712 217 HOH HOH . 
K 4 HOH A 13 713 324 HOH HOH . 
K 4 HOH A 14 714 188 HOH HOH . 
K 4 HOH A 15 715 232 HOH HOH . 
K 4 HOH A 16 716 261 HOH HOH . 
K 4 HOH A 17 717 176 HOH HOH . 
K 4 HOH A 18 718 6 HOH HOH . 
K 4 HOH A 19 719 306 HOH HOH . 
K 4 HOH A 20 720 46 HOH HOH . 
K 4 HOH A 21 721 43 HOH HOH . 
K 4 HOH A 22 722 142 HOH HOH . 
K 4 HOH A 23 723 149 HOH HOH . 
K 4 HOH A 24 724 326 HOH HOH . 
K 4 HOH A 25 725 1 HOH HOH . 
K 4 HOH A 26 726 2 HOH HOH . 
K 4 HOH A 27 727 3 HOH HOH . 
K 4 HOH A 28 728 4 HOH HOH . 
K 4 HOH A 29 729 5 HOH HOH . 
K 4 HOH A 30 730 7 HOH HOH . 
K 4 HOH A 31 731 8 HOH HOH . 
K 4 HOH A 32 732 9 HOH HOH . 
K 4 HOH A 33 733 10 HOH HOH . 
K 4 HOH A 34 734 12 HOH HOH . 
K 4 HOH A 35 735 13 HOH HOH . 
K 4 HOH A 36 736 14 HOH HOH . 
K 4 HOH A 37 737 15 HOH HOH . 
K 4 HOH A 38 738 16 HOH HOH . 
K 4 HOH A 39 739 18 HOH HOH . 
K 4 HOH A 40 740 20 HOH HOH . 
K 4 HOH A 41 741 23 HOH HOH . 
K 4 HOH A 42 742 25 HOH HOH . 
K 4 HOH A 43 743 27 HOH HOH . 
K 4 HOH A 44 744 29 HOH HOH . 
K 4 HOH A 45 745 30 HOH HOH . 
K 4 HOH A 46 746 33 HOH HOH . 
K 4 HOH A 47 747 35 HOH HOH . 
K 4 HOH A 48 748 37 HOH HOH . 
K 4 HOH A 49 749 39 HOH HOH . 
K 4 HOH A 50 750 40 HOH HOH . 
K 4 HOH A 51 751 41 HOH HOH . 
K 4 HOH A 52 752 44 HOH HOH . 
K 4 HOH A 53 753 47 HOH HOH . 
K 4 HOH A 54 754 48 HOH HOH . 
K 4 HOH A 55 755 50 HOH HOH . 
K 4 HOH A 56 756 53 HOH HOH . 
K 4 HOH A 57 757 56 HOH HOH . 
K 4 HOH A 58 758 58 HOH HOH . 
K 4 HOH A 59 759 59 HOH HOH . 
K 4 HOH A 60 760 60 HOH HOH . 
K 4 HOH A 61 761 61 HOH HOH . 
K 4 HOH A 62 762 62 HOH HOH . 
K 4 HOH A 63 763 63 HOH HOH . 
K 4 HOH A 64 764 66 HOH HOH . 
K 4 HOH A 65 765 67 HOH HOH . 
K 4 HOH A 66 766 74 HOH HOH . 
K 4 HOH A 67 767 75 HOH HOH . 
K 4 HOH A 68 768 78 HOH HOH . 
K 4 HOH A 69 769 79 HOH HOH . 
K 4 HOH A 70 770 90 HOH HOH . 
K 4 HOH A 71 771 95 HOH HOH . 
K 4 HOH A 72 772 96 HOH HOH . 
K 4 HOH A 73 773 97 HOH HOH . 
K 4 HOH A 74 774 99 HOH HOH . 
K 4 HOH A 75 775 100 HOH HOH . 
K 4 HOH A 76 776 105 HOH HOH . 
K 4 HOH A 77 777 106 HOH HOH . 
K 4 HOH A 78 778 112 HOH HOH . 
K 4 HOH A 79 779 119 HOH HOH . 
K 4 HOH A 80 780 124 HOH HOH . 
K 4 HOH A 81 781 125 HOH HOH . 
K 4 HOH A 82 782 136 HOH HOH . 
K 4 HOH A 83 783 137 HOH HOH . 
K 4 HOH A 84 784 140 HOH HOH . 
K 4 HOH A 85 785 143 HOH HOH . 
K 4 HOH A 86 786 144 HOH HOH . 
K 4 HOH A 87 787 146 HOH HOH . 
K 4 HOH A 88 788 148 HOH HOH . 
K 4 HOH A 89 789 150 HOH HOH . 
K 4 HOH A 90 790 151 HOH HOH . 
K 4 HOH A 91 791 153 HOH HOH . 
K 4 HOH A 92 792 158 HOH HOH . 
K 4 HOH A 93 793 161 HOH HOH . 
K 4 HOH A 94 794 164 HOH HOH . 
K 4 HOH A 95 795 172 HOH HOH . 
K 4 HOH A 96 796 177 HOH HOH . 
K 4 HOH A 97 797 180 HOH HOH . 
K 4 HOH A 98 798 184 HOH HOH . 
K 4 HOH A 99 799 187 HOH HOH . 
K 4 HOH A 100 800 200 HOH HOH . 
K 4 HOH A 101 801 203 HOH HOH . 
K 4 HOH A 102 802 206 HOH HOH . 
K 4 HOH A 103 803 210 HOH HOH . 
K 4 HOH A 104 804 219 HOH HOH . 
K 4 HOH A 105 805 221 HOH HOH . 
K 4 HOH A 106 806 223 HOH HOH . 
K 4 HOH A 107 807 229 HOH HOH . 
K 4 HOH A 108 808 263 HOH HOH . 
K 4 HOH A 109 809 266 HOH HOH . 
K 4 HOH A 110 810 304 HOH HOH . 
K 4 HOH A 111 811 323 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 40F . . . B 2 52.505 -27.241 7.2 1 32.51 ? O1 40F 601 A 1 
HETATM 2 C C7 40F . . . B 2 52.151 -24.728 8.785 1 30.15 ? C7 40F 601 A 1 
HETATM 3 O O2 40F . . . B 2 47.641 -25.233 11.152 1 33.03 ? O2 40F 601 A 1 
HETATM 4 C C6 40F . . . B 2 52.305 -25.581 10.052 1 30.02 ? C6 40F 601 A 1 
HETATM 5 C C1 40F . . . B 2 51.009 -25.368 7.928 1 30.91 ? C1 40F 601 A 1 
HETATM 6 C C5 40F . . . B 2 51.025 -26.377 10.162 1 31.43 ? C5 40F 601 A 1 
HETATM 7 C C4 40F . . . B 2 48.554 -26.131 10.826 1 33.59 ? C4 40F 601 A 1 
HETATM 8 C C3 40F . . . B 2 49.732 -25.557 10.154 1 34.01 ? C3 40F 601 A 1 
HETATM 9 C C2 40F . . . B 2 50.222 -26.246 8.88 1 32.26 ? C2 40F 601 A 1 
HETATM 10 O O3 40F . . . B 2 48.357 -27.272 11.089 1 35.03 ? O3 40F 601 A 1 
HETATM 11 N N 40F . . . B 2 50.179 -24.346 7.236 1 25.7 ? N 40F 601 A 1 
HETATM 12 C C 40F . . . B 2 51.613 -26.289 6.884 1 30.03 ? C 40F 601 A 1 
HETATM 13 O O 40F . . . B 2 51.337 -26.183 5.721 1 30.29 ? O 40F 601 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           13 
#