data_4XAT
#
_model_server_result.job_id            St4a2ICHxPcmfB3OCyvToQ 
_model_server_result.datetime_utc      '2024-11-22 21:59:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xat 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":503}' 
#
_entry.id    4XAT 
#
_exptl.entry_id    4XAT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4XAT 
_cell.length_a            39.681 
_cell.length_b            68.016 
_cell.length_c            95.659 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XAT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 10 A CYS 227 1_555 A SG CYS 192 A CYS 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc1 A O GLY 85 A GLY 302 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? 
metalc ? metalc2 A O GLN 86 A GLN 303 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.007 ? 
metalc ? metalc3 A OD2 ASP 139 A ASP 356 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc4 A OD1 ASP 139 A ASP 356 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc5 A O LEU 140 A LEU 357 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc6 A OE1 GLU 187 A GLU 404 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? 
metalc ? metalc7 A O ALA 188 A ALA 405 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? 
metalc ? metalc8 A O LEU 235 A LEU 452 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
metalc ? metalc9 A OD1 ASP 236 A ASP 453 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? 
metalc ? metalc10 A OD2 ASP 236 A ASP 453 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc11 B CA CA . A CA 501 1_555 F O HOH . A HOH 667 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? 
metalc ? metalc12 E NA NA . A NA 504 1_555 F O HOH . A HOH 646 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4XAT 
_atom_sites.fract_transf_matrix[1][1]    0.025201 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014702 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010454 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 501 1 CA CA . 
C 3 GOL A 1 502 1 GOL GOL . 
D 3 GOL A 1 503 2 GOL GOL . 
E 4 NA A 1 504 1 NA NA . 
F 5 HOH A 1 601 57 HOH HOH . 
F 5 HOH A 2 602 2 HOH HOH . 
F 5 HOH A 3 603 35 HOH HOH . 
F 5 HOH A 4 604 40 HOH HOH . 
F 5 HOH A 5 605 39 HOH HOH . 
F 5 HOH A 6 606 17 HOH HOH . 
F 5 HOH A 7 607 41 HOH HOH . 
F 5 HOH A 8 608 76 HOH HOH . 
F 5 HOH A 9 609 136 HOH HOH . 
F 5 HOH A 10 610 11 HOH HOH . 
F 5 HOH A 11 611 114 HOH HOH . 
F 5 HOH A 12 612 44 HOH HOH . 
F 5 HOH A 13 613 15 HOH HOH . 
F 5 HOH A 14 614 127 HOH HOH . 
F 5 HOH A 15 615 111 HOH HOH . 
F 5 HOH A 16 616 43 HOH HOH . 
F 5 HOH A 17 617 27 HOH HOH . 
F 5 HOH A 18 618 56 HOH HOH . 
F 5 HOH A 19 619 18 HOH HOH . 
F 5 HOH A 20 620 48 HOH HOH . 
F 5 HOH A 21 621 116 HOH HOH . 
F 5 HOH A 22 622 37 HOH HOH . 
F 5 HOH A 23 623 46 HOH HOH . 
F 5 HOH A 24 624 49 HOH HOH . 
F 5 HOH A 25 625 135 HOH HOH . 
F 5 HOH A 26 626 61 HOH HOH . 
F 5 HOH A 27 627 85 HOH HOH . 
F 5 HOH A 28 628 138 HOH HOH . 
F 5 HOH A 29 629 38 HOH HOH . 
F 5 HOH A 30 630 60 HOH HOH . 
F 5 HOH A 31 631 98 HOH HOH . 
F 5 HOH A 32 632 128 HOH HOH . 
F 5 HOH A 33 633 50 HOH HOH . 
F 5 HOH A 34 634 71 HOH HOH . 
F 5 HOH A 35 635 124 HOH HOH . 
F 5 HOH A 36 636 131 HOH HOH . 
F 5 HOH A 37 637 129 HOH HOH . 
F 5 HOH A 38 638 122 HOH HOH . 
F 5 HOH A 39 639 109 HOH HOH . 
F 5 HOH A 40 640 83 HOH HOH . 
F 5 HOH A 41 641 105 HOH HOH . 
F 5 HOH A 42 642 100 HOH HOH . 
F 5 HOH A 43 643 1 HOH HOH . 
F 5 HOH A 44 644 3 HOH HOH . 
F 5 HOH A 45 645 4 HOH HOH . 
F 5 HOH A 46 646 5 HOH HOH . 
F 5 HOH A 47 647 6 HOH HOH . 
F 5 HOH A 48 648 7 HOH HOH . 
F 5 HOH A 49 649 8 HOH HOH . 
F 5 HOH A 50 650 9 HOH HOH . 
F 5 HOH A 51 651 10 HOH HOH . 
F 5 HOH A 52 652 12 HOH HOH . 
F 5 HOH A 53 653 13 HOH HOH . 
F 5 HOH A 54 654 14 HOH HOH . 
F 5 HOH A 55 655 16 HOH HOH . 
F 5 HOH A 56 656 19 HOH HOH . 
F 5 HOH A 57 657 20 HOH HOH . 
F 5 HOH A 58 658 21 HOH HOH . 
F 5 HOH A 59 659 22 HOH HOH . 
F 5 HOH A 60 660 23 HOH HOH . 
F 5 HOH A 61 661 24 HOH HOH . 
F 5 HOH A 62 662 25 HOH HOH . 
F 5 HOH A 63 663 26 HOH HOH . 
F 5 HOH A 64 664 28 HOH HOH . 
F 5 HOH A 65 665 29 HOH HOH . 
F 5 HOH A 66 666 30 HOH HOH . 
F 5 HOH A 67 667 31 HOH HOH . 
F 5 HOH A 68 668 32 HOH HOH . 
F 5 HOH A 69 669 33 HOH HOH . 
F 5 HOH A 70 670 34 HOH HOH . 
F 5 HOH A 71 671 36 HOH HOH . 
F 5 HOH A 72 672 42 HOH HOH . 
F 5 HOH A 73 673 45 HOH HOH . 
F 5 HOH A 74 674 47 HOH HOH . 
F 5 HOH A 75 675 51 HOH HOH . 
F 5 HOH A 76 676 52 HOH HOH . 
F 5 HOH A 77 677 53 HOH HOH . 
F 5 HOH A 78 678 54 HOH HOH . 
F 5 HOH A 79 679 55 HOH HOH . 
F 5 HOH A 80 680 58 HOH HOH . 
F 5 HOH A 81 681 59 HOH HOH . 
F 5 HOH A 82 682 62 HOH HOH . 
F 5 HOH A 83 683 63 HOH HOH . 
F 5 HOH A 84 684 64 HOH HOH . 
F 5 HOH A 85 685 65 HOH HOH . 
F 5 HOH A 86 686 66 HOH HOH . 
F 5 HOH A 87 687 67 HOH HOH . 
F 5 HOH A 88 688 68 HOH HOH . 
F 5 HOH A 89 689 69 HOH HOH . 
F 5 HOH A 90 690 70 HOH HOH . 
F 5 HOH A 91 691 72 HOH HOH . 
F 5 HOH A 92 692 73 HOH HOH . 
F 5 HOH A 93 693 74 HOH HOH . 
F 5 HOH A 94 694 75 HOH HOH . 
F 5 HOH A 95 695 77 HOH HOH . 
F 5 HOH A 96 696 78 HOH HOH . 
F 5 HOH A 97 697 79 HOH HOH . 
F 5 HOH A 98 698 80 HOH HOH . 
F 5 HOH A 99 699 81 HOH HOH . 
F 5 HOH A 100 700 82 HOH HOH . 
F 5 HOH A 101 701 84 HOH HOH . 
F 5 HOH A 102 702 86 HOH HOH . 
F 5 HOH A 103 703 87 HOH HOH . 
F 5 HOH A 104 704 88 HOH HOH . 
F 5 HOH A 105 705 89 HOH HOH . 
F 5 HOH A 106 706 90 HOH HOH . 
F 5 HOH A 107 707 91 HOH HOH . 
F 5 HOH A 108 708 92 HOH HOH . 
F 5 HOH A 109 709 93 HOH HOH . 
F 5 HOH A 110 710 94 HOH HOH . 
F 5 HOH A 111 711 95 HOH HOH . 
F 5 HOH A 112 712 96 HOH HOH . 
F 5 HOH A 113 713 97 HOH HOH . 
F 5 HOH A 114 714 99 HOH HOH . 
F 5 HOH A 115 715 101 HOH HOH . 
F 5 HOH A 116 716 102 HOH HOH . 
F 5 HOH A 117 717 103 HOH HOH . 
F 5 HOH A 118 718 104 HOH HOH . 
F 5 HOH A 119 719 106 HOH HOH . 
F 5 HOH A 120 720 107 HOH HOH . 
F 5 HOH A 121 721 108 HOH HOH . 
F 5 HOH A 122 722 110 HOH HOH . 
F 5 HOH A 123 723 112 HOH HOH . 
F 5 HOH A 124 724 113 HOH HOH . 
F 5 HOH A 125 725 115 HOH HOH . 
F 5 HOH A 126 726 117 HOH HOH . 
F 5 HOH A 127 727 118 HOH HOH . 
F 5 HOH A 128 728 119 HOH HOH . 
F 5 HOH A 129 729 120 HOH HOH . 
F 5 HOH A 130 730 121 HOH HOH . 
F 5 HOH A 131 731 123 HOH HOH . 
F 5 HOH A 132 732 125 HOH HOH . 
F 5 HOH A 133 733 126 HOH HOH . 
F 5 HOH A 134 734 130 HOH HOH . 
F 5 HOH A 135 735 132 HOH HOH . 
F 5 HOH A 136 736 133 HOH HOH . 
F 5 HOH A 137 737 134 HOH HOH . 
F 5 HOH A 138 738 137 HOH HOH . 
F 5 HOH A 139 739 139 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 1.36 60.986 75.878 1 45.45 ? C1 GOL 503 A 1 
HETATM 2 O O1 GOL . . . D 3 2.294 61.811 75.207 1 39.33 ? O1 GOL 503 A 1 
HETATM 3 C C2 GOL . . . D 3 0.425 60.358 74.865 1 42.78 ? C2 GOL 503 A 1 
HETATM 4 O O2 GOL . . . D 3 0.994 60.507 73.586 1 49.39 ? O2 GOL 503 A 1 
HETATM 5 C C3 GOL . . . D 3 0.231 58.875 75.123 1 45.3 ? C3 GOL 503 A 1 
HETATM 6 O O3 GOL . . . D 3 -0.673 58.362 74.173 1 40.76 ? O3 GOL 503 A 1 
HETATM 7 H H11 GOL . . . D 3 0.851 61.497 76.535 1 54.53 ? H11 GOL 503 A 1 
HETATM 8 H H12 GOL . . . D 3 1.855 60.276 76.33 1 54.53 ? H12 GOL 503 A 1 
HETATM 9 H HO1 GOL . . . D 3 3.043 61.858 75.682 1 47.19 ? HO1 GOL 503 A 1 
HETATM 10 H H2 GOL . . . D 3 -0.439 60.811 74.892 1 51.33 ? H2 GOL 503 A 1 
HETATM 11 H HO2 GOL . . . D 3 0.78 61.304 73.258 1 59.27 ? HO2 GOL 503 A 1 
HETATM 12 H H31 GOL . . . D 3 -0.126 58.742 76.021 1 54.36 ? H31 GOL 503 A 1 
HETATM 13 H H32 GOL . . . D 3 1.088 58.414 75.04 1 54.36 ? H32 GOL 503 A 1 
HETATM 14 H HO3 GOL . . . D 3 -1.047 57.622 74.49 1 48.91 ? HO3 GOL 503 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#