data_4XAT # _model_server_result.job_id K4ng4Td2yYLknZS9FDM51Q _model_server_result.datetime_utc '2024-11-22 21:24:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xat # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 4XAT # _exptl.entry_id 4XAT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XAT _cell.length_a 39.681 _cell.length_b 68.016 _cell.length_c 95.659 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XAT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 227 1_555 A SG CYS 192 A CYS 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc1 A O GLY 85 A GLY 302 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? metalc ? metalc2 A O GLN 86 A GLN 303 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.007 ? metalc ? metalc3 A OD2 ASP 139 A ASP 356 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc4 A OD1 ASP 139 A ASP 356 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc5 A O LEU 140 A LEU 357 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc6 A OE1 GLU 187 A GLU 404 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc7 A O ALA 188 A ALA 405 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc8 A O LEU 235 A LEU 452 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc9 A OD1 ASP 236 A ASP 453 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc10 A OD2 ASP 236 A ASP 453 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc11 B CA CA . A CA 501 1_555 F O HOH . A HOH 667 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc12 E NA NA . A NA 504 1_555 F O HOH . A HOH 646 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4XAT _atom_sites.fract_transf_matrix[1][1] 0.025201 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014702 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010454 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 501 1 CA CA . C 3 GOL A 1 502 1 GOL GOL . D 3 GOL A 1 503 2 GOL GOL . E 4 NA A 1 504 1 NA NA . F 5 HOH A 1 601 57 HOH HOH . F 5 HOH A 2 602 2 HOH HOH . F 5 HOH A 3 603 35 HOH HOH . F 5 HOH A 4 604 40 HOH HOH . F 5 HOH A 5 605 39 HOH HOH . F 5 HOH A 6 606 17 HOH HOH . F 5 HOH A 7 607 41 HOH HOH . F 5 HOH A 8 608 76 HOH HOH . F 5 HOH A 9 609 136 HOH HOH . F 5 HOH A 10 610 11 HOH HOH . F 5 HOH A 11 611 114 HOH HOH . F 5 HOH A 12 612 44 HOH HOH . F 5 HOH A 13 613 15 HOH HOH . F 5 HOH A 14 614 127 HOH HOH . F 5 HOH A 15 615 111 HOH HOH . F 5 HOH A 16 616 43 HOH HOH . F 5 HOH A 17 617 27 HOH HOH . F 5 HOH A 18 618 56 HOH HOH . F 5 HOH A 19 619 18 HOH HOH . F 5 HOH A 20 620 48 HOH HOH . F 5 HOH A 21 621 116 HOH HOH . F 5 HOH A 22 622 37 HOH HOH . F 5 HOH A 23 623 46 HOH HOH . F 5 HOH A 24 624 49 HOH HOH . F 5 HOH A 25 625 135 HOH HOH . F 5 HOH A 26 626 61 HOH HOH . F 5 HOH A 27 627 85 HOH HOH . F 5 HOH A 28 628 138 HOH HOH . F 5 HOH A 29 629 38 HOH HOH . F 5 HOH A 30 630 60 HOH HOH . F 5 HOH A 31 631 98 HOH HOH . F 5 HOH A 32 632 128 HOH HOH . F 5 HOH A 33 633 50 HOH HOH . F 5 HOH A 34 634 71 HOH HOH . F 5 HOH A 35 635 124 HOH HOH . F 5 HOH A 36 636 131 HOH HOH . F 5 HOH A 37 637 129 HOH HOH . F 5 HOH A 38 638 122 HOH HOH . F 5 HOH A 39 639 109 HOH HOH . F 5 HOH A 40 640 83 HOH HOH . F 5 HOH A 41 641 105 HOH HOH . F 5 HOH A 42 642 100 HOH HOH . F 5 HOH A 43 643 1 HOH HOH . F 5 HOH A 44 644 3 HOH HOH . F 5 HOH A 45 645 4 HOH HOH . F 5 HOH A 46 646 5 HOH HOH . F 5 HOH A 47 647 6 HOH HOH . F 5 HOH A 48 648 7 HOH HOH . F 5 HOH A 49 649 8 HOH HOH . F 5 HOH A 50 650 9 HOH HOH . F 5 HOH A 51 651 10 HOH HOH . F 5 HOH A 52 652 12 HOH HOH . F 5 HOH A 53 653 13 HOH HOH . F 5 HOH A 54 654 14 HOH HOH . F 5 HOH A 55 655 16 HOH HOH . F 5 HOH A 56 656 19 HOH HOH . F 5 HOH A 57 657 20 HOH HOH . F 5 HOH A 58 658 21 HOH HOH . F 5 HOH A 59 659 22 HOH HOH . F 5 HOH A 60 660 23 HOH HOH . F 5 HOH A 61 661 24 HOH HOH . F 5 HOH A 62 662 25 HOH HOH . F 5 HOH A 63 663 26 HOH HOH . F 5 HOH A 64 664 28 HOH HOH . F 5 HOH A 65 665 29 HOH HOH . F 5 HOH A 66 666 30 HOH HOH . F 5 HOH A 67 667 31 HOH HOH . F 5 HOH A 68 668 32 HOH HOH . F 5 HOH A 69 669 33 HOH HOH . F 5 HOH A 70 670 34 HOH HOH . F 5 HOH A 71 671 36 HOH HOH . F 5 HOH A 72 672 42 HOH HOH . F 5 HOH A 73 673 45 HOH HOH . F 5 HOH A 74 674 47 HOH HOH . F 5 HOH A 75 675 51 HOH HOH . F 5 HOH A 76 676 52 HOH HOH . F 5 HOH A 77 677 53 HOH HOH . F 5 HOH A 78 678 54 HOH HOH . F 5 HOH A 79 679 55 HOH HOH . F 5 HOH A 80 680 58 HOH HOH . F 5 HOH A 81 681 59 HOH HOH . F 5 HOH A 82 682 62 HOH HOH . F 5 HOH A 83 683 63 HOH HOH . F 5 HOH A 84 684 64 HOH HOH . F 5 HOH A 85 685 65 HOH HOH . F 5 HOH A 86 686 66 HOH HOH . F 5 HOH A 87 687 67 HOH HOH . F 5 HOH A 88 688 68 HOH HOH . F 5 HOH A 89 689 69 HOH HOH . F 5 HOH A 90 690 70 HOH HOH . F 5 HOH A 91 691 72 HOH HOH . F 5 HOH A 92 692 73 HOH HOH . F 5 HOH A 93 693 74 HOH HOH . F 5 HOH A 94 694 75 HOH HOH . F 5 HOH A 95 695 77 HOH HOH . F 5 HOH A 96 696 78 HOH HOH . F 5 HOH A 97 697 79 HOH HOH . F 5 HOH A 98 698 80 HOH HOH . F 5 HOH A 99 699 81 HOH HOH . F 5 HOH A 100 700 82 HOH HOH . F 5 HOH A 101 701 84 HOH HOH . F 5 HOH A 102 702 86 HOH HOH . F 5 HOH A 103 703 87 HOH HOH . F 5 HOH A 104 704 88 HOH HOH . F 5 HOH A 105 705 89 HOH HOH . F 5 HOH A 106 706 90 HOH HOH . F 5 HOH A 107 707 91 HOH HOH . F 5 HOH A 108 708 92 HOH HOH . F 5 HOH A 109 709 93 HOH HOH . F 5 HOH A 110 710 94 HOH HOH . F 5 HOH A 111 711 95 HOH HOH . F 5 HOH A 112 712 96 HOH HOH . F 5 HOH A 113 713 97 HOH HOH . F 5 HOH A 114 714 99 HOH HOH . F 5 HOH A 115 715 101 HOH HOH . F 5 HOH A 116 716 102 HOH HOH . F 5 HOH A 117 717 103 HOH HOH . F 5 HOH A 118 718 104 HOH HOH . F 5 HOH A 119 719 106 HOH HOH . F 5 HOH A 120 720 107 HOH HOH . F 5 HOH A 121 721 108 HOH HOH . F 5 HOH A 122 722 110 HOH HOH . F 5 HOH A 123 723 112 HOH HOH . F 5 HOH A 124 724 113 HOH HOH . F 5 HOH A 125 725 115 HOH HOH . F 5 HOH A 126 726 117 HOH HOH . F 5 HOH A 127 727 118 HOH HOH . F 5 HOH A 128 728 119 HOH HOH . F 5 HOH A 129 729 120 HOH HOH . F 5 HOH A 130 730 121 HOH HOH . F 5 HOH A 131 731 123 HOH HOH . F 5 HOH A 132 732 125 HOH HOH . F 5 HOH A 133 733 126 HOH HOH . F 5 HOH A 134 734 130 HOH HOH . F 5 HOH A 135 735 132 HOH HOH . F 5 HOH A 136 736 133 HOH HOH . F 5 HOH A 137 737 134 HOH HOH . F 5 HOH A 138 738 137 HOH HOH . F 5 HOH A 139 739 139 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 8.335 _atom_site.Cartn_y 47.956 _atom_site.Cartn_z 64.965 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20.59 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 504 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #