data_4XB1
#
_model_server_result.job_id            f1PLB2qt4POOq8hTAwbKAA 
_model_server_result.datetime_utc      '2025-01-03 08:29:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xb1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1002}' 
#
_entry.id    4XB1 
#
_exptl.entry_id    4XB1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4XB1 
_cell.length_a            112.56 
_cell.length_b            112.56 
_cell.length_c            95.885 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XB1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLU 156 A GLU 140 1_555 D NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
metalc ? metalc2 A OE1 GLU 156 A GLU 140 1_555 D NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? 
metalc ? metalc3 A O VAL 159 A VAL 143 1_555 D NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc4 A O ALA 161 A ALA 145 1_555 D NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? 
metalc ? metalc5 A O THR 163 A THR 147 1_555 D NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
metalc ? metalc6 B O GLU 156 B GLU 140 1_555 H NA NA . B NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? 
metalc ? metalc7 B OE1 GLU 156 B GLU 140 1_555 H NA NA . B NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? 
metalc ? metalc8 B O VAL 159 B VAL 143 1_555 H NA NA . B NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc9 B O ALA 161 B ALA 145 1_555 H NA NA . B NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? 
metalc ? metalc10 B O THR 163 B THR 147 1_555 H NA NA . B NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4XB1 
_atom_sites.fract_transf_matrix[1][1]    0.008884 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008884 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010429 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NDP A 1 1001 1001 NDP NDP . 
D 3 NA A 1 1002 2001 NA NA . 
E 4 MPD A 1 1003 3001 MPD MPD . 
F 4 MPD A 1 1004 3002 MPD MPD . 
G 2 NDP B 1 1001 1001 NDP NDP . 
H 3 NA B 1 1002 2001 NA NA . 
I 4 MPD B 1 1003 3001 MPD MPD . 
J 4 MPD B 1 1004 3002 MPD MPD . 
K 4 MPD B 1 1005 3003 MPD MPD . 
L 5 HOH A 1 1101 81 HOH HOH . 
L 5 HOH A 2 1102 198 HOH HOH . 
L 5 HOH A 3 1103 101 HOH HOH . 
L 5 HOH A 4 1104 154 HOH HOH . 
L 5 HOH A 5 1105 51 HOH HOH . 
L 5 HOH A 6 1106 95 HOH HOH . 
L 5 HOH A 7 1107 3 HOH HOH . 
L 5 HOH A 8 1108 48 HOH HOH . 
L 5 HOH A 9 1109 103 HOH HOH . 
L 5 HOH A 10 1110 78 HOH HOH . 
L 5 HOH A 11 1111 37 HOH HOH . 
L 5 HOH A 12 1112 149 HOH HOH . 
L 5 HOH A 13 1113 7 HOH HOH . 
L 5 HOH A 14 1114 16 HOH HOH . 
L 5 HOH A 15 1115 150 HOH HOH . 
L 5 HOH A 16 1116 56 HOH HOH . 
L 5 HOH A 17 1117 179 HOH HOH . 
L 5 HOH A 18 1118 148 HOH HOH . 
L 5 HOH A 19 1119 157 HOH HOH . 
L 5 HOH A 20 1120 89 HOH HOH . 
L 5 HOH A 21 1121 155 HOH HOH . 
L 5 HOH A 22 1122 4 HOH HOH . 
L 5 HOH A 23 1123 19 HOH HOH . 
L 5 HOH A 24 1124 20 HOH HOH . 
L 5 HOH A 25 1125 22 HOH HOH . 
L 5 HOH A 26 1126 23 HOH HOH . 
L 5 HOH A 27 1127 24 HOH HOH . 
L 5 HOH A 28 1128 26 HOH HOH . 
L 5 HOH A 29 1129 27 HOH HOH . 
L 5 HOH A 30 1130 28 HOH HOH . 
L 5 HOH A 31 1131 29 HOH HOH . 
L 5 HOH A 32 1132 30 HOH HOH . 
L 5 HOH A 33 1133 33 HOH HOH . 
L 5 HOH A 34 1134 35 HOH HOH . 
L 5 HOH A 35 1135 36 HOH HOH . 
L 5 HOH A 36 1136 40 HOH HOH . 
L 5 HOH A 37 1137 42 HOH HOH . 
L 5 HOH A 38 1138 46 HOH HOH . 
L 5 HOH A 39 1139 52 HOH HOH . 
L 5 HOH A 40 1140 54 HOH HOH . 
L 5 HOH A 41 1141 57 HOH HOH . 
L 5 HOH A 42 1142 58 HOH HOH . 
L 5 HOH A 43 1143 59 HOH HOH . 
L 5 HOH A 44 1144 61 HOH HOH . 
L 5 HOH A 45 1145 65 HOH HOH . 
L 5 HOH A 46 1146 66 HOH HOH . 
L 5 HOH A 47 1147 69 HOH HOH . 
L 5 HOH A 48 1148 70 HOH HOH . 
L 5 HOH A 49 1149 71 HOH HOH . 
L 5 HOH A 50 1150 72 HOH HOH . 
L 5 HOH A 51 1151 74 HOH HOH . 
L 5 HOH A 52 1152 76 HOH HOH . 
L 5 HOH A 53 1153 79 HOH HOH . 
L 5 HOH A 54 1154 83 HOH HOH . 
L 5 HOH A 55 1155 84 HOH HOH . 
L 5 HOH A 56 1156 88 HOH HOH . 
L 5 HOH A 57 1157 90 HOH HOH . 
L 5 HOH A 58 1158 91 HOH HOH . 
L 5 HOH A 59 1159 92 HOH HOH . 
L 5 HOH A 60 1160 93 HOH HOH . 
L 5 HOH A 61 1161 96 HOH HOH . 
L 5 HOH A 62 1162 97 HOH HOH . 
L 5 HOH A 63 1163 99 HOH HOH . 
L 5 HOH A 64 1164 102 HOH HOH . 
L 5 HOH A 65 1165 107 HOH HOH . 
L 5 HOH A 66 1166 108 HOH HOH . 
L 5 HOH A 67 1167 109 HOH HOH . 
L 5 HOH A 68 1168 110 HOH HOH . 
L 5 HOH A 69 1169 113 HOH HOH . 
L 5 HOH A 70 1170 115 HOH HOH . 
L 5 HOH A 71 1171 116 HOH HOH . 
L 5 HOH A 72 1172 117 HOH HOH . 
L 5 HOH A 73 1173 118 HOH HOH . 
L 5 HOH A 74 1174 119 HOH HOH . 
L 5 HOH A 75 1175 122 HOH HOH . 
L 5 HOH A 76 1176 125 HOH HOH . 
L 5 HOH A 77 1177 128 HOH HOH . 
L 5 HOH A 78 1178 130 HOH HOH . 
L 5 HOH A 79 1179 132 HOH HOH . 
L 5 HOH A 80 1180 133 HOH HOH . 
L 5 HOH A 81 1181 134 HOH HOH . 
L 5 HOH A 82 1182 135 HOH HOH . 
L 5 HOH A 83 1183 136 HOH HOH . 
L 5 HOH A 84 1184 137 HOH HOH . 
L 5 HOH A 85 1185 138 HOH HOH . 
L 5 HOH A 86 1186 139 HOH HOH . 
L 5 HOH A 87 1187 140 HOH HOH . 
L 5 HOH A 88 1188 141 HOH HOH . 
L 5 HOH A 89 1189 142 HOH HOH . 
L 5 HOH A 90 1190 143 HOH HOH . 
L 5 HOH A 91 1191 144 HOH HOH . 
L 5 HOH A 92 1192 145 HOH HOH . 
L 5 HOH A 93 1193 146 HOH HOH . 
L 5 HOH A 94 1194 147 HOH HOH . 
L 5 HOH A 95 1195 156 HOH HOH . 
L 5 HOH A 96 1196 161 HOH HOH . 
L 5 HOH A 97 1197 163 HOH HOH . 
L 5 HOH A 98 1198 164 HOH HOH . 
L 5 HOH A 99 1199 166 HOH HOH . 
L 5 HOH A 100 1200 169 HOH HOH . 
L 5 HOH A 101 1201 170 HOH HOH . 
L 5 HOH A 102 1202 171 HOH HOH . 
L 5 HOH A 103 1203 172 HOH HOH . 
L 5 HOH A 104 1204 175 HOH HOH . 
L 5 HOH A 105 1205 177 HOH HOH . 
L 5 HOH A 106 1206 178 HOH HOH . 
L 5 HOH A 107 1207 186 HOH HOH . 
L 5 HOH A 108 1208 187 HOH HOH . 
L 5 HOH A 109 1209 188 HOH HOH . 
L 5 HOH A 110 1210 189 HOH HOH . 
L 5 HOH A 111 1211 190 HOH HOH . 
L 5 HOH A 112 1212 192 HOH HOH . 
L 5 HOH A 113 1213 196 HOH HOH . 
L 5 HOH A 114 1214 197 HOH HOH . 
L 5 HOH A 115 1215 199 HOH HOH . 
L 5 HOH A 116 1216 200 HOH HOH . 
L 5 HOH A 117 1217 201 HOH HOH . 
L 5 HOH A 118 1218 206 HOH HOH . 
L 5 HOH A 119 1219 208 HOH HOH . 
L 5 HOH A 120 1220 209 HOH HOH . 
M 5 HOH B 1 1101 64 HOH HOH . 
M 5 HOH B 2 1102 94 HOH HOH . 
M 5 HOH B 3 1103 152 HOH HOH . 
M 5 HOH B 4 1104 212 HOH HOH . 
M 5 HOH B 5 1105 131 HOH HOH . 
M 5 HOH B 6 1106 207 HOH HOH . 
M 5 HOH B 7 1107 191 HOH HOH . 
M 5 HOH B 8 1108 80 HOH HOH . 
M 5 HOH B 9 1109 165 HOH HOH . 
M 5 HOH B 10 1110 173 HOH HOH . 
M 5 HOH B 11 1111 121 HOH HOH . 
M 5 HOH B 12 1112 168 HOH HOH . 
M 5 HOH B 13 1113 153 HOH HOH . 
M 5 HOH B 14 1114 174 HOH HOH . 
M 5 HOH B 15 1115 193 HOH HOH . 
M 5 HOH B 16 1116 38 HOH HOH . 
M 5 HOH B 17 1117 1 HOH HOH . 
M 5 HOH B 18 1118 2 HOH HOH . 
M 5 HOH B 19 1119 5 HOH HOH . 
M 5 HOH B 20 1120 6 HOH HOH . 
M 5 HOH B 21 1121 8 HOH HOH . 
M 5 HOH B 22 1122 9 HOH HOH . 
M 5 HOH B 23 1123 10 HOH HOH . 
M 5 HOH B 24 1124 11 HOH HOH . 
M 5 HOH B 25 1125 12 HOH HOH . 
M 5 HOH B 26 1126 13 HOH HOH . 
M 5 HOH B 27 1127 14 HOH HOH . 
M 5 HOH B 28 1128 15 HOH HOH . 
M 5 HOH B 29 1129 17 HOH HOH . 
M 5 HOH B 30 1130 18 HOH HOH . 
M 5 HOH B 31 1131 21 HOH HOH . 
M 5 HOH B 32 1132 25 HOH HOH . 
M 5 HOH B 33 1133 31 HOH HOH . 
M 5 HOH B 34 1134 32 HOH HOH . 
M 5 HOH B 35 1135 34 HOH HOH . 
M 5 HOH B 36 1136 39 HOH HOH . 
M 5 HOH B 37 1137 41 HOH HOH . 
M 5 HOH B 38 1138 43 HOH HOH . 
M 5 HOH B 39 1139 44 HOH HOH . 
M 5 HOH B 40 1140 45 HOH HOH . 
M 5 HOH B 41 1141 47 HOH HOH . 
M 5 HOH B 42 1142 49 HOH HOH . 
M 5 HOH B 43 1143 50 HOH HOH . 
M 5 HOH B 44 1144 53 HOH HOH . 
M 5 HOH B 45 1145 55 HOH HOH . 
M 5 HOH B 46 1146 60 HOH HOH . 
M 5 HOH B 47 1147 62 HOH HOH . 
M 5 HOH B 48 1148 63 HOH HOH . 
M 5 HOH B 49 1149 67 HOH HOH . 
M 5 HOH B 50 1150 68 HOH HOH . 
M 5 HOH B 51 1151 73 HOH HOH . 
M 5 HOH B 52 1152 75 HOH HOH . 
M 5 HOH B 53 1153 77 HOH HOH . 
M 5 HOH B 54 1154 82 HOH HOH . 
M 5 HOH B 55 1155 85 HOH HOH . 
M 5 HOH B 56 1156 86 HOH HOH . 
M 5 HOH B 57 1157 87 HOH HOH . 
M 5 HOH B 58 1158 98 HOH HOH . 
M 5 HOH B 59 1159 100 HOH HOH . 
M 5 HOH B 60 1160 104 HOH HOH . 
M 5 HOH B 61 1161 105 HOH HOH . 
M 5 HOH B 62 1162 106 HOH HOH . 
M 5 HOH B 63 1163 111 HOH HOH . 
M 5 HOH B 64 1164 112 HOH HOH . 
M 5 HOH B 65 1165 114 HOH HOH . 
M 5 HOH B 66 1166 120 HOH HOH . 
M 5 HOH B 67 1167 123 HOH HOH . 
M 5 HOH B 68 1168 124 HOH HOH . 
M 5 HOH B 69 1169 126 HOH HOH . 
M 5 HOH B 70 1170 127 HOH HOH . 
M 5 HOH B 71 1171 129 HOH HOH . 
M 5 HOH B 72 1172 151 HOH HOH . 
M 5 HOH B 73 1173 158 HOH HOH . 
M 5 HOH B 74 1174 159 HOH HOH . 
M 5 HOH B 75 1175 160 HOH HOH . 
M 5 HOH B 76 1176 162 HOH HOH . 
M 5 HOH B 77 1177 167 HOH HOH . 
M 5 HOH B 78 1178 176 HOH HOH . 
M 5 HOH B 79 1179 180 HOH HOH . 
M 5 HOH B 80 1180 181 HOH HOH . 
M 5 HOH B 81 1181 182 HOH HOH . 
M 5 HOH B 82 1182 183 HOH HOH . 
M 5 HOH B 83 1183 184 HOH HOH . 
M 5 HOH B 84 1184 185 HOH HOH . 
M 5 HOH B 85 1185 194 HOH HOH . 
M 5 HOH B 86 1186 195 HOH HOH . 
M 5 HOH B 87 1187 202 HOH HOH . 
M 5 HOH B 88 1188 203 HOH HOH . 
M 5 HOH B 89 1189 204 HOH HOH . 
M 5 HOH B 90 1190 205 HOH HOH . 
M 5 HOH B 91 1191 210 HOH HOH . 
M 5 HOH B 92 1192 211 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               23.454 
_atom_site.Cartn_y               48.406 
_atom_site.Cartn_z               -0.669 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        19.9 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           1002 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          17 
_model_server_stats.element_count           1 
#