data_4XB2 # _model_server_result.job_id Zgu_D9YrHyysx1ooXmSVTA _model_server_result.datetime_utc '2025-01-18 07:06:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xb2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1002}' # _entry.id 4XB2 # _exptl.entry_id 4XB2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 119.119 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-HOMOSERINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.54 _cell.angle_gamma 90 _cell.entry_id 4XB2 _cell.length_a 78.389 _cell.length_b 47.811 _cell.length_c 90.534 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XB2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLU 156 A GLU 140 1_555 E NA NA . A NA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc2 A OE1 GLU 156 A GLU 140 1_555 E NA NA . A NA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc3 A O VAL 159 A VAL 143 1_555 E NA NA . A NA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc4 A O ALA 161 A ALA 145 1_555 E NA NA . A NA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc5 A O THR 163 A THR 147 1_555 E NA NA . A NA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc6 B O GLU 156 B GLU 140 1_555 H NA NA . B NA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc7 B OE1 GLU 156 B GLU 140 1_555 H NA NA . B NA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc8 B O VAL 159 B VAL 143 1_555 H NA NA . B NA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc9 B O ALA 161 B ALA 145 1_555 H NA NA . B NA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc10 B O THR 163 B THR 147 1_555 H NA NA . B NA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? # _chem_comp.formula 'C4 H9 N O3' _chem_comp.formula_weight 119.119 _chem_comp.id HSE _chem_comp.mon_nstd_flag n _chem_comp.name L-HOMOSERINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA HSE sing 139 n n N H HSE sing 140 n n N H2 HSE sing 141 n n CA C HSE sing 142 n n CA C3 HSE sing 143 n n CA HA HSE sing 144 n n C O HSE doub 145 n n C OXT HSE sing 146 n n C3 C4 HSE sing 147 n n C3 H31 HSE sing 148 n n C3 H32 HSE sing 149 n n OXT HXT HSE sing 150 n n C4 O3 HSE sing 151 n n C4 H41 HSE sing 152 n n C4 H42 HSE sing 153 n n O3 HO3 HSE sing 154 n n # _atom_sites.entry_id 4XB2 _atom_sites.fract_transf_matrix[1][1] 0.012757 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001238 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020916 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011097 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 1001 1001 NDP NDP . D 3 HSE A 1 1002 2001 HSE HSE . E 4 NA A 1 1003 3001 NA NA . F 2 NDP B 1 1001 1001 NDP NDP . G 3 HSE B 1 1002 2001 HSE HSE . H 4 NA B 1 1003 3001 NA NA . I 5 HOH A 1 1101 172 HOH HOH . I 5 HOH A 2 1102 190 HOH HOH . I 5 HOH A 3 1103 117 HOH HOH . I 5 HOH A 4 1104 57 HOH HOH . I 5 HOH A 5 1105 61 HOH HOH . I 5 HOH A 6 1106 204 HOH HOH . I 5 HOH A 7 1107 51 HOH HOH . I 5 HOH A 8 1108 28 HOH HOH . I 5 HOH A 9 1109 179 HOH HOH . I 5 HOH A 10 1110 1 HOH HOH . I 5 HOH A 11 1111 192 HOH HOH . I 5 HOH A 12 1112 45 HOH HOH . I 5 HOH A 13 1113 159 HOH HOH . I 5 HOH A 14 1114 203 HOH HOH . I 5 HOH A 15 1115 93 HOH HOH . I 5 HOH A 16 1116 118 HOH HOH . I 5 HOH A 17 1117 2 HOH HOH . I 5 HOH A 18 1118 132 HOH HOH . I 5 HOH A 19 1119 121 HOH HOH . I 5 HOH A 20 1120 104 HOH HOH . I 5 HOH A 21 1121 154 HOH HOH . I 5 HOH A 22 1122 59 HOH HOH . I 5 HOH A 23 1123 211 HOH HOH . I 5 HOH A 24 1124 3 HOH HOH . I 5 HOH A 25 1125 7 HOH HOH . I 5 HOH A 26 1126 12 HOH HOH . I 5 HOH A 27 1127 15 HOH HOH . I 5 HOH A 28 1128 21 HOH HOH . I 5 HOH A 29 1129 23 HOH HOH . I 5 HOH A 30 1130 24 HOH HOH . I 5 HOH A 31 1131 27 HOH HOH . I 5 HOH A 32 1132 30 HOH HOH . I 5 HOH A 33 1133 31 HOH HOH . I 5 HOH A 34 1134 35 HOH HOH . I 5 HOH A 35 1135 38 HOH HOH . I 5 HOH A 36 1136 39 HOH HOH . I 5 HOH A 37 1137 41 HOH HOH . I 5 HOH A 38 1138 42 HOH HOH . I 5 HOH A 39 1139 47 HOH HOH . I 5 HOH A 40 1140 48 HOH HOH . I 5 HOH A 41 1141 49 HOH HOH . I 5 HOH A 42 1142 53 HOH HOH . I 5 HOH A 43 1143 54 HOH HOH . I 5 HOH A 44 1144 55 HOH HOH . I 5 HOH A 45 1145 56 HOH HOH . I 5 HOH A 46 1146 58 HOH HOH . I 5 HOH A 47 1147 65 HOH HOH . I 5 HOH A 48 1148 69 HOH HOH . I 5 HOH A 49 1149 72 HOH HOH . I 5 HOH A 50 1150 73 HOH HOH . I 5 HOH A 51 1151 75 HOH HOH . I 5 HOH A 52 1152 79 HOH HOH . I 5 HOH A 53 1153 80 HOH HOH . I 5 HOH A 54 1154 85 HOH HOH . I 5 HOH A 55 1155 87 HOH HOH . I 5 HOH A 56 1156 88 HOH HOH . I 5 HOH A 57 1157 89 HOH HOH . I 5 HOH A 58 1158 95 HOH HOH . I 5 HOH A 59 1159 99 HOH HOH . I 5 HOH A 60 1160 100 HOH HOH . I 5 HOH A 61 1161 105 HOH HOH . I 5 HOH A 62 1162 113 HOH HOH . I 5 HOH A 63 1163 114 HOH HOH . I 5 HOH A 64 1164 123 HOH HOH . I 5 HOH A 65 1165 125 HOH HOH . I 5 HOH A 66 1166 127 HOH HOH . I 5 HOH A 67 1167 133 HOH HOH . I 5 HOH A 68 1168 134 HOH HOH . I 5 HOH A 69 1169 135 HOH HOH . I 5 HOH A 70 1170 136 HOH HOH . I 5 HOH A 71 1171 137 HOH HOH . I 5 HOH A 72 1172 138 HOH HOH . I 5 HOH A 73 1173 142 HOH HOH . I 5 HOH A 74 1174 144 HOH HOH . I 5 HOH A 75 1175 145 HOH HOH . I 5 HOH A 76 1176 146 HOH HOH . I 5 HOH A 77 1177 147 HOH HOH . I 5 HOH A 78 1178 150 HOH HOH . I 5 HOH A 79 1179 151 HOH HOH . I 5 HOH A 80 1180 153 HOH HOH . I 5 HOH A 81 1181 161 HOH HOH . I 5 HOH A 82 1182 163 HOH HOH . I 5 HOH A 83 1183 167 HOH HOH . I 5 HOH A 84 1184 171 HOH HOH . I 5 HOH A 85 1185 173 HOH HOH . I 5 HOH A 86 1186 176 HOH HOH . I 5 HOH A 87 1187 177 HOH HOH . I 5 HOH A 88 1188 180 HOH HOH . I 5 HOH A 89 1189 187 HOH HOH . I 5 HOH A 90 1190 191 HOH HOH . I 5 HOH A 91 1191 196 HOH HOH . I 5 HOH A 92 1192 201 HOH HOH . I 5 HOH A 93 1193 202 HOH HOH . I 5 HOH A 94 1194 208 HOH HOH . J 5 HOH B 1 1101 210 HOH HOH . J 5 HOH B 2 1102 193 HOH HOH . J 5 HOH B 3 1103 129 HOH HOH . J 5 HOH B 4 1104 36 HOH HOH . J 5 HOH B 5 1105 185 HOH HOH . J 5 HOH B 6 1106 43 HOH HOH . J 5 HOH B 7 1107 116 HOH HOH . J 5 HOH B 8 1108 19 HOH HOH . J 5 HOH B 9 1109 182 HOH HOH . J 5 HOH B 10 1110 44 HOH HOH . J 5 HOH B 11 1111 183 HOH HOH . J 5 HOH B 12 1112 160 HOH HOH . J 5 HOH B 13 1113 170 HOH HOH . J 5 HOH B 14 1114 20 HOH HOH . J 5 HOH B 15 1115 34 HOH HOH . J 5 HOH B 16 1116 169 HOH HOH . J 5 HOH B 17 1117 102 HOH HOH . J 5 HOH B 18 1118 115 HOH HOH . J 5 HOH B 19 1119 186 HOH HOH . J 5 HOH B 20 1120 101 HOH HOH . J 5 HOH B 21 1121 166 HOH HOH . J 5 HOH B 22 1122 60 HOH HOH . J 5 HOH B 23 1123 4 HOH HOH . J 5 HOH B 24 1124 178 HOH HOH . J 5 HOH B 25 1125 76 HOH HOH . J 5 HOH B 26 1126 108 HOH HOH . J 5 HOH B 27 1127 40 HOH HOH . J 5 HOH B 28 1128 168 HOH HOH . J 5 HOH B 29 1129 206 HOH HOH . J 5 HOH B 30 1130 84 HOH HOH . J 5 HOH B 31 1131 209 HOH HOH . J 5 HOH B 32 1132 103 HOH HOH . J 5 HOH B 33 1133 5 HOH HOH . J 5 HOH B 34 1134 6 HOH HOH . J 5 HOH B 35 1135 8 HOH HOH . J 5 HOH B 36 1136 9 HOH HOH . J 5 HOH B 37 1137 10 HOH HOH . J 5 HOH B 38 1138 11 HOH HOH . J 5 HOH B 39 1139 13 HOH HOH . J 5 HOH B 40 1140 14 HOH HOH . J 5 HOH B 41 1141 16 HOH HOH . J 5 HOH B 42 1142 17 HOH HOH . J 5 HOH B 43 1143 18 HOH HOH . J 5 HOH B 44 1144 22 HOH HOH . J 5 HOH B 45 1145 25 HOH HOH . J 5 HOH B 46 1146 26 HOH HOH . J 5 HOH B 47 1147 29 HOH HOH . J 5 HOH B 48 1148 32 HOH HOH . J 5 HOH B 49 1149 33 HOH HOH . J 5 HOH B 50 1150 37 HOH HOH . J 5 HOH B 51 1151 46 HOH HOH . J 5 HOH B 52 1152 50 HOH HOH . J 5 HOH B 53 1153 52 HOH HOH . J 5 HOH B 54 1154 62 HOH HOH . J 5 HOH B 55 1155 63 HOH HOH . J 5 HOH B 56 1156 64 HOH HOH . J 5 HOH B 57 1157 66 HOH HOH . J 5 HOH B 58 1158 67 HOH HOH . J 5 HOH B 59 1159 68 HOH HOH . J 5 HOH B 60 1160 70 HOH HOH . J 5 HOH B 61 1161 71 HOH HOH . J 5 HOH B 62 1162 74 HOH HOH . J 5 HOH B 63 1163 77 HOH HOH . J 5 HOH B 64 1164 78 HOH HOH . J 5 HOH B 65 1165 81 HOH HOH . J 5 HOH B 66 1166 82 HOH HOH . J 5 HOH B 67 1167 83 HOH HOH . J 5 HOH B 68 1168 86 HOH HOH . J 5 HOH B 69 1169 90 HOH HOH . J 5 HOH B 70 1170 91 HOH HOH . J 5 HOH B 71 1171 92 HOH HOH . J 5 HOH B 72 1172 94 HOH HOH . J 5 HOH B 73 1173 96 HOH HOH . J 5 HOH B 74 1174 97 HOH HOH . J 5 HOH B 75 1175 98 HOH HOH . J 5 HOH B 76 1176 106 HOH HOH . J 5 HOH B 77 1177 107 HOH HOH . J 5 HOH B 78 1178 109 HOH HOH . J 5 HOH B 79 1179 110 HOH HOH . J 5 HOH B 80 1180 111 HOH HOH . J 5 HOH B 81 1181 112 HOH HOH . J 5 HOH B 82 1182 119 HOH HOH . J 5 HOH B 83 1183 120 HOH HOH . J 5 HOH B 84 1184 122 HOH HOH . J 5 HOH B 85 1185 124 HOH HOH . J 5 HOH B 86 1186 126 HOH HOH . J 5 HOH B 87 1187 128 HOH HOH . J 5 HOH B 88 1188 130 HOH HOH . J 5 HOH B 89 1189 131 HOH HOH . J 5 HOH B 90 1190 139 HOH HOH . J 5 HOH B 91 1191 140 HOH HOH . J 5 HOH B 92 1192 141 HOH HOH . J 5 HOH B 93 1193 143 HOH HOH . J 5 HOH B 94 1194 148 HOH HOH . J 5 HOH B 95 1195 149 HOH HOH . J 5 HOH B 96 1196 152 HOH HOH . J 5 HOH B 97 1197 155 HOH HOH . J 5 HOH B 98 1198 156 HOH HOH . J 5 HOH B 99 1199 157 HOH HOH . J 5 HOH B 100 1200 158 HOH HOH . J 5 HOH B 101 1201 162 HOH HOH . J 5 HOH B 102 1202 164 HOH HOH . J 5 HOH B 103 1203 165 HOH HOH . J 5 HOH B 104 1204 174 HOH HOH . J 5 HOH B 105 1205 175 HOH HOH . J 5 HOH B 106 1206 181 HOH HOH . J 5 HOH B 107 1207 184 HOH HOH . J 5 HOH B 108 1208 188 HOH HOH . J 5 HOH B 109 1209 189 HOH HOH . J 5 HOH B 110 1210 194 HOH HOH . J 5 HOH B 111 1211 195 HOH HOH . J 5 HOH B 112 1212 197 HOH HOH . J 5 HOH B 113 1213 198 HOH HOH . J 5 HOH B 114 1214 199 HOH HOH . J 5 HOH B 115 1215 200 HOH HOH . J 5 HOH B 116 1216 205 HOH HOH . J 5 HOH B 117 1217 207 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N HSE . . . G 3 -34.076 -7.135 -34.671 1 27.5 ? N HSE 1002 B 1 HETATM 2 C CA HSE . . . G 3 -34.505 -5.873 -33.937 1 31.84 ? CA HSE 1002 B 1 HETATM 3 C C HSE . . . G 3 -34.785 -4.519 -34.708 1 31.58 ? C HSE 1002 B 1 HETATM 4 C C3 HSE . . . G 3 -33.474 -5.659 -32.85 1 26.21 ? C3 HSE 1002 B 1 HETATM 5 O O HSE . . . G 3 -33.893 -3.916 -35.277 1 29.27 ? O HSE 1002 B 1 HETATM 6 O OXT HSE . . . G 3 -35.894 -3.941 -34.819 1 30.36 ? OXT HSE 1002 B 1 HETATM 7 C C4 HSE . . . G 3 -34.179 -6.09 -31.526 1 26.09 ? C4 HSE 1002 B 1 HETATM 8 O O3 HSE . . . G 3 -33.753 -5.359 -30.307 1 22.11 ? O3 HSE 1002 B 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 1192 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 8 #