data_4XB5 # _model_server_result.job_id piY7kS28L_q36B5I5bi-dA _model_server_result.datetime_utc '2024-11-14 03:55:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xb5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 4XB5 # _exptl.entry_id 4XB5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4XB5 _cell.length_a 82.894 _cell.length_b 82.894 _cell.length_c 87.201 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XB5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 224 n n C1 C2 GOL sing 225 n n C1 H11 GOL sing 226 n n C1 H12 GOL sing 227 n n O1 HO1 GOL sing 228 n n C2 O2 GOL sing 229 n n C2 C3 GOL sing 230 n n C2 H2 GOL sing 231 n n O2 HO2 GOL sing 232 n n C3 O3 GOL sing 233 n n C3 H31 GOL sing 234 n n C3 H32 GOL sing 235 n n O3 HO3 GOL sing 236 n n # _atom_sites.entry_id 4XB5 _atom_sites.fract_transf_matrix[1][1] 0.012064 _atom_sites.fract_transf_matrix[1][2] 0.006965 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01393 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011468 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 45D A 1 501 501 45D CAN . C 3 GOL A 1 502 601 GOL GOL . D 4 HOH A 1 601 165 HOH HOH . D 4 HOH A 2 602 98 HOH HOH . D 4 HOH A 3 603 17 HOH HOH . D 4 HOH A 4 604 15 HOH HOH . D 4 HOH A 5 605 6 HOH HOH . D 4 HOH A 6 606 16 HOH HOH . D 4 HOH A 7 607 177 HOH HOH . D 4 HOH A 8 608 23 HOH HOH . D 4 HOH A 9 609 101 HOH HOH . D 4 HOH A 10 610 102 HOH HOH . D 4 HOH A 11 611 225 HOH HOH . D 4 HOH A 12 612 36 HOH HOH . D 4 HOH A 13 613 95 HOH HOH . D 4 HOH A 14 614 83 HOH HOH . D 4 HOH A 15 615 143 HOH HOH . D 4 HOH A 16 616 109 HOH HOH . D 4 HOH A 17 617 52 HOH HOH . D 4 HOH A 18 618 33 HOH HOH . D 4 HOH A 19 619 31 HOH HOH . D 4 HOH A 20 620 44 HOH HOH . D 4 HOH A 21 621 111 HOH HOH . D 4 HOH A 22 622 21 HOH HOH . D 4 HOH A 23 623 145 HOH HOH . D 4 HOH A 24 624 104 HOH HOH . D 4 HOH A 25 625 86 HOH HOH . D 4 HOH A 26 626 9 HOH HOH . D 4 HOH A 27 627 229 HOH HOH . D 4 HOH A 28 628 19 HOH HOH . D 4 HOH A 29 629 152 HOH HOH . D 4 HOH A 30 630 57 HOH HOH . D 4 HOH A 31 631 99 HOH HOH . D 4 HOH A 32 632 196 HOH HOH . D 4 HOH A 33 633 72 HOH HOH . D 4 HOH A 34 634 40 HOH HOH . D 4 HOH A 35 635 189 HOH HOH . D 4 HOH A 36 636 167 HOH HOH . D 4 HOH A 37 637 136 HOH HOH . D 4 HOH A 38 638 140 HOH HOH . D 4 HOH A 39 639 92 HOH HOH . D 4 HOH A 40 640 221 HOH HOH . D 4 HOH A 41 641 150 HOH HOH . D 4 HOH A 42 642 149 HOH HOH . D 4 HOH A 43 643 85 HOH HOH . D 4 HOH A 44 644 4 HOH HOH . D 4 HOH A 45 645 147 HOH HOH . D 4 HOH A 46 646 187 HOH HOH . D 4 HOH A 47 647 61 HOH HOH . D 4 HOH A 48 648 151 HOH HOH . D 4 HOH A 49 649 172 HOH HOH . D 4 HOH A 50 650 89 HOH HOH . D 4 HOH A 51 651 131 HOH HOH . D 4 HOH A 52 652 26 HOH HOH . D 4 HOH A 53 653 50 HOH HOH . D 4 HOH A 54 654 164 HOH HOH . D 4 HOH A 55 655 157 HOH HOH . D 4 HOH A 56 656 163 HOH HOH . D 4 HOH A 57 657 65 HOH HOH . D 4 HOH A 58 658 234 HOH HOH . D 4 HOH A 59 659 188 HOH HOH . D 4 HOH A 60 660 139 HOH HOH . D 4 HOH A 61 661 220 HOH HOH . D 4 HOH A 62 662 211 HOH HOH . D 4 HOH A 63 663 100 HOH HOH . D 4 HOH A 64 664 122 HOH HOH . D 4 HOH A 65 665 87 HOH HOH . D 4 HOH A 66 666 186 HOH HOH . D 4 HOH A 67 667 214 HOH HOH . D 4 HOH A 68 668 180 HOH HOH . D 4 HOH A 69 669 190 HOH HOH . D 4 HOH A 70 670 39 HOH HOH . D 4 HOH A 71 671 134 HOH HOH . D 4 HOH A 72 672 67 HOH HOH . D 4 HOH A 73 673 1 HOH HOH . D 4 HOH A 74 674 2 HOH HOH . D 4 HOH A 75 675 3 HOH HOH . D 4 HOH A 76 676 5 HOH HOH . D 4 HOH A 77 677 7 HOH HOH . D 4 HOH A 78 678 8 HOH HOH . D 4 HOH A 79 679 10 HOH HOH . D 4 HOH A 80 680 11 HOH HOH . D 4 HOH A 81 681 12 HOH HOH . D 4 HOH A 82 682 13 HOH HOH . D 4 HOH A 83 683 14 HOH HOH . D 4 HOH A 84 684 18 HOH HOH . D 4 HOH A 85 685 20 HOH HOH . D 4 HOH A 86 686 22 HOH HOH . D 4 HOH A 87 687 24 HOH HOH . D 4 HOH A 88 688 25 HOH HOH . D 4 HOH A 89 689 27 HOH HOH . D 4 HOH A 90 690 28 HOH HOH . D 4 HOH A 91 691 29 HOH HOH . D 4 HOH A 92 692 30 HOH HOH . D 4 HOH A 93 693 32 HOH HOH . D 4 HOH A 94 694 34 HOH HOH . D 4 HOH A 95 695 35 HOH HOH . D 4 HOH A 96 696 37 HOH HOH . D 4 HOH A 97 697 38 HOH HOH . D 4 HOH A 98 698 41 HOH HOH . D 4 HOH A 99 699 42 HOH HOH . D 4 HOH A 100 700 43 HOH HOH . D 4 HOH A 101 701 45 HOH HOH . D 4 HOH A 102 702 46 HOH HOH . D 4 HOH A 103 703 47 HOH HOH . D 4 HOH A 104 704 48 HOH HOH . D 4 HOH A 105 705 49 HOH HOH . D 4 HOH A 106 706 51 HOH HOH . D 4 HOH A 107 707 53 HOH HOH . D 4 HOH A 108 708 54 HOH HOH . D 4 HOH A 109 709 55 HOH HOH . D 4 HOH A 110 710 56 HOH HOH . D 4 HOH A 111 711 58 HOH HOH . D 4 HOH A 112 712 59 HOH HOH . D 4 HOH A 113 713 60 HOH HOH . D 4 HOH A 114 714 62 HOH HOH . D 4 HOH A 115 715 63 HOH HOH . D 4 HOH A 116 716 64 HOH HOH . D 4 HOH A 117 717 66 HOH HOH . D 4 HOH A 118 718 68 HOH HOH . D 4 HOH A 119 719 69 HOH HOH . D 4 HOH A 120 720 70 HOH HOH . D 4 HOH A 121 721 71 HOH HOH . D 4 HOH A 122 722 73 HOH HOH . D 4 HOH A 123 723 74 HOH HOH . D 4 HOH A 124 724 75 HOH HOH . D 4 HOH A 125 725 76 HOH HOH . D 4 HOH A 126 726 77 HOH HOH . D 4 HOH A 127 727 78 HOH HOH . D 4 HOH A 128 728 79 HOH HOH . D 4 HOH A 129 729 80 HOH HOH . D 4 HOH A 130 730 81 HOH HOH . D 4 HOH A 131 731 82 HOH HOH . D 4 HOH A 132 732 84 HOH HOH . D 4 HOH A 133 733 88 HOH HOH . D 4 HOH A 134 734 90 HOH HOH . D 4 HOH A 135 735 91 HOH HOH . D 4 HOH A 136 736 93 HOH HOH . D 4 HOH A 137 737 94 HOH HOH . D 4 HOH A 138 738 96 HOH HOH . D 4 HOH A 139 739 97 HOH HOH . D 4 HOH A 140 740 103 HOH HOH . D 4 HOH A 141 741 105 HOH HOH . D 4 HOH A 142 742 106 HOH HOH . D 4 HOH A 143 743 107 HOH HOH . D 4 HOH A 144 744 108 HOH HOH . D 4 HOH A 145 745 110 HOH HOH . D 4 HOH A 146 746 112 HOH HOH . D 4 HOH A 147 747 113 HOH HOH . D 4 HOH A 148 748 114 HOH HOH . D 4 HOH A 149 749 115 HOH HOH . D 4 HOH A 150 750 116 HOH HOH . D 4 HOH A 151 751 117 HOH HOH . D 4 HOH A 152 752 118 HOH HOH . D 4 HOH A 153 753 119 HOH HOH . D 4 HOH A 154 754 120 HOH HOH . D 4 HOH A 155 755 121 HOH HOH . D 4 HOH A 156 756 123 HOH HOH . D 4 HOH A 157 757 124 HOH HOH . D 4 HOH A 158 758 125 HOH HOH . D 4 HOH A 159 759 126 HOH HOH . D 4 HOH A 160 760 127 HOH HOH . D 4 HOH A 161 761 128 HOH HOH . D 4 HOH A 162 762 129 HOH HOH . D 4 HOH A 163 763 130 HOH HOH . D 4 HOH A 164 764 132 HOH HOH . D 4 HOH A 165 765 133 HOH HOH . D 4 HOH A 166 766 135 HOH HOH . D 4 HOH A 167 767 137 HOH HOH . D 4 HOH A 168 768 138 HOH HOH . D 4 HOH A 169 769 141 HOH HOH . D 4 HOH A 170 770 142 HOH HOH . D 4 HOH A 171 771 144 HOH HOH . D 4 HOH A 172 772 146 HOH HOH . D 4 HOH A 173 773 148 HOH HOH . D 4 HOH A 174 774 153 HOH HOH . D 4 HOH A 175 775 154 HOH HOH . D 4 HOH A 176 776 155 HOH HOH . D 4 HOH A 177 777 156 HOH HOH . D 4 HOH A 178 778 158 HOH HOH . D 4 HOH A 179 779 159 HOH HOH . D 4 HOH A 180 780 160 HOH HOH . D 4 HOH A 181 781 161 HOH HOH . D 4 HOH A 182 782 162 HOH HOH . D 4 HOH A 183 783 166 HOH HOH . D 4 HOH A 184 784 168 HOH HOH . D 4 HOH A 185 785 169 HOH HOH . D 4 HOH A 186 786 170 HOH HOH . D 4 HOH A 187 787 171 HOH HOH . D 4 HOH A 188 788 173 HOH HOH . D 4 HOH A 189 789 174 HOH HOH . D 4 HOH A 190 790 175 HOH HOH . D 4 HOH A 191 791 176 HOH HOH . D 4 HOH A 192 792 178 HOH HOH . D 4 HOH A 193 793 179 HOH HOH . D 4 HOH A 194 794 181 HOH HOH . D 4 HOH A 195 795 182 HOH HOH . D 4 HOH A 196 796 183 HOH HOH . D 4 HOH A 197 797 184 HOH HOH . D 4 HOH A 198 798 185 HOH HOH . D 4 HOH A 199 799 191 HOH HOH . D 4 HOH A 200 800 192 HOH HOH . D 4 HOH A 201 801 193 HOH HOH . D 4 HOH A 202 802 194 HOH HOH . D 4 HOH A 203 803 195 HOH HOH . D 4 HOH A 204 804 197 HOH HOH . D 4 HOH A 205 805 198 HOH HOH . D 4 HOH A 206 806 199 HOH HOH . D 4 HOH A 207 807 200 HOH HOH . D 4 HOH A 208 808 201 HOH HOH . D 4 HOH A 209 809 202 HOH HOH . D 4 HOH A 210 810 203 HOH HOH . D 4 HOH A 211 811 204 HOH HOH . D 4 HOH A 212 812 205 HOH HOH . D 4 HOH A 213 813 206 HOH HOH . D 4 HOH A 214 814 207 HOH HOH . D 4 HOH A 215 815 208 HOH HOH . D 4 HOH A 216 816 209 HOH HOH . D 4 HOH A 217 817 210 HOH HOH . D 4 HOH A 218 818 212 HOH HOH . D 4 HOH A 219 819 213 HOH HOH . D 4 HOH A 220 820 215 HOH HOH . D 4 HOH A 221 821 216 HOH HOH . D 4 HOH A 222 822 217 HOH HOH . D 4 HOH A 223 823 218 HOH HOH . D 4 HOH A 224 824 219 HOH HOH . D 4 HOH A 225 825 222 HOH HOH . D 4 HOH A 226 826 223 HOH HOH . D 4 HOH A 227 827 224 HOH HOH . D 4 HOH A 228 828 226 HOH HOH . D 4 HOH A 229 829 227 HOH HOH . D 4 HOH A 230 830 228 HOH HOH . D 4 HOH A 231 831 230 HOH HOH . D 4 HOH A 232 832 231 HOH HOH . D 4 HOH A 233 833 232 HOH HOH . D 4 HOH A 234 834 233 HOH HOH . D 4 HOH A 235 835 235 HOH HOH . D 4 HOH A 236 836 236 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 67.058 53.65 -3.933 1 30.44 ? C1 GOL 502 A 1 HETATM 2 O O1 GOL . . . C 3 68.065 52.8 -3.419 1 30.63 ? O1 GOL 502 A 1 HETATM 3 C C2 GOL . . . C 3 66.065 52.87 -4.792 1 43.67 ? C2 GOL 502 A 1 HETATM 4 O O2 GOL . . . C 3 65.658 51.672 -4.185 1 39.15 ? O2 GOL 502 A 1 HETATM 5 C C3 GOL . . . C 3 64.833 53.712 -5.048 1 31.78 ? C3 GOL 502 A 1 HETATM 6 O O3 GOL . . . C 3 64.852 54.024 -6.414 1 40.48 ? O3 GOL 502 A 1 HETATM 7 H H11 GOL . . . C 3 66.528 54.125 -3.107 1 36.53 ? H11 GOL 502 A 1 HETATM 8 H H12 GOL . . . C 3 67.517 54.436 -4.532 1 36.53 ? H12 GOL 502 A 1 HETATM 9 H HO1 GOL . . . C 3 68.724 53.333 -2.927 1 36.76 ? HO1 GOL 502 A 1 HETATM 10 H H2 GOL . . . C 3 66.537 52.651 -5.75 1 52.4 ? H2 GOL 502 A 1 HETATM 11 H HO2 GOL . . . C 3 65.194 51.873 -3.346 1 46.98 ? HO2 GOL 502 A 1 HETATM 12 H H31 GOL . . . C 3 63.931 53.154 -4.798 1 38.13 ? H31 GOL 502 A 1 HETATM 13 H H32 GOL . . . C 3 64.863 54.623 -4.449 1 38.13 ? H32 GOL 502 A 1 HETATM 14 H HO3 GOL . . . C 3 65.163 54.945 -6.534 1 48.57 ? HO3 GOL 502 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #