data_4XB8 # _model_server_result.job_id xwNtcFFY5i72tQmuXWHtKg _model_server_result.datetime_utc '2024-11-05 01:00:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xb8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":404}' # _entry.id 4XB8 # _exptl.entry_id 4XB8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.65 _cell.angle_gamma 90 _cell.entry_id 4XB8 _cell.length_a 66.672 _cell.length_b 57.269 _cell.length_c 129.946 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XB8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 K N N ? 4 L N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O6 HO6 . sing 4 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG C 4018 NAG 2 n C NAG 2 C 2 NAG C 4019 NAG 2 n C BMA 3 C 3 BMA C 4020 MAN 2 n C MAN 4 C 4 MAN C 4021 MAN 3 n D NAG 1 D 1 NAG C 4293 NAG 3 n D NAG 2 D 2 NAG C 4294 NAG 3 n E NAG 1 E 1 NAG D 4293 NAG 3 n E NAG 2 E 2 NAG D 4294 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 A CYS 26 1_555 A SG CYS 86 A CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 129 A CYS 125 1_555 A SG CYS 188 A CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 241 A CYS 237 1_555 A SG CYS 294 A CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 336 A CYS 332 1_555 A SG CYS 377 A CYS 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 B SG CYS 30 B CYS 26 1_555 B SG CYS 86 B CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 B SG CYS 129 B CYS 125 1_555 B SG CYS 188 B CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 B SG CYS 241 B CYS 237 1_555 B SG CYS 294 B CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 B SG CYS 336 B CYS 332 1_555 B SG CYS 377 B CYS 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 22 A ASN 18 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 A ND2 ASN 297 A ASN 293 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale3 B ND2 ASN 22 B ASN 18 1_555 J C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 B ND2 ASN 297 B ASN 293 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale6 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale7 C O6 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale9 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? metalc ? metalc1 A OE1 GLU 13 A GLU 9 1_555 G ZN ZN . A ZN 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc2 A OE2 GLU 13 A GLU 9 1_555 G ZN ZN . A ZN 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc3 A OD1 ASP 99 A ASP 95 1_555 F ZN ZN . A ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc4 A OD2 ASP 99 A ASP 95 1_555 F ZN ZN . A ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc5 A NE2 HIS 101 A HIS 97 1_555 F ZN ZN . A ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc6 A OE1 GLU 113 A GLU 109 1_555 H ZN ZN . A ZN 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc7 A OE2 GLU 113 A GLU 109 1_555 H ZN ZN . A ZN 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc8 A OD1 ASP 115 A ASP 111 1_555 I ZN ZN . A ZN 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc9 A OD2 ASP 115 A ASP 111 1_555 I ZN ZN . A ZN 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc10 A OE1 GLU 130 A GLU 126 1_555 H ZN ZN . A ZN 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc11 A OE2 GLU 130 A GLU 126 1_555 H ZN ZN . A ZN 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc12 A O GLU 387 A GLU 383 1_555 G ZN ZN . A ZN 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc13 A OE1 GLU 387 A GLU 383 1_555 G ZN ZN . A ZN 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc14 F ZN ZN . A ZN 407 1_555 M O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc15 H ZN ZN . A ZN 409 1_555 B OD1 ASP 115 B ASP 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc16 H ZN ZN . A ZN 409 1_555 B OD2 ASP 115 B ASP 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc17 I ZN ZN . A ZN 410 1_555 B OE1 GLU 113 B GLU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc18 I ZN ZN . A ZN 410 1_555 B OE2 GLU 113 B GLU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc19 I ZN ZN . A ZN 410 1_555 B OE1 GLU 130 B GLU 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc20 I ZN ZN . A ZN 410 1_555 B OE2 GLU 130 B GLU 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc21 B OE1 GLU 13 B GLU 9 1_555 L ZN ZN . B ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc22 B OE2 GLU 13 B GLU 9 1_555 L ZN ZN . B ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc23 B OD1 ASP 99 B ASP 95 1_555 K ZN ZN . B ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc24 B OD2 ASP 99 B ASP 95 1_555 K ZN ZN . B ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc25 B NE2 HIS 101 B HIS 97 1_555 K ZN ZN . B ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc26 B O GLU 387 B GLU 383 1_555 L ZN ZN . B ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc27 B OE1 GLU 387 B GLU 383 1_555 L ZN ZN . B ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc28 K ZN ZN . B ZN 404 1_555 N O HOH . B HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4XB8 _atom_sites.fract_transf_matrix[1][1] 0.014999 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000956 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017461 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007711 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 ZN A 1 407 2002 ZN ZN . G 4 ZN A 1 408 2005 ZN ZN . H 4 ZN A 1 409 2006 ZN ZN . I 4 ZN A 1 410 2001 ZN ZN . J 5 NAG B 1 401 4018 NAG NAG . K 4 ZN B 1 404 2003 ZN ZN . L 4 ZN B 1 405 2004 ZN ZN . M 6 HOH A 1 501 1 HOH HOH . M 6 HOH A 2 502 1 HOH HOH . M 6 HOH A 3 503 1 HOH HOH . M 6 HOH A 4 504 1 HOH HOH . M 6 HOH A 5 505 5 HOH HOH . M 6 HOH A 6 506 8 HOH HOH . N 6 HOH B 1 501 2 HOH HOH . N 6 HOH B 2 502 1 HOH HOH . N 6 HOH B 3 503 1 HOH HOH . N 6 HOH B 4 504 7 HOH HOH . N 6 HOH B 5 505 6 HOH HOH . N 6 HOH B 6 506 1 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id K _atom_site.label_entity_id 4 _atom_site.Cartn_x -6.823 _atom_site.Cartn_y -23.614 _atom_site.Cartn_z -15.423 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 107.44 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 404 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #