data_4XBB # _model_server_result.job_id I1jOaRbA1DTx7wjjxofKpA _model_server_result.datetime_utc '2024-12-22 22:26:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xbb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4XBB # _exptl.entry_id 4XBB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 612.051 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'diethyl [(1R,2S)-2-[(N-{[(3-chlorobenzyl)oxy]carbonyl}-3-cyclohexyl-L-alanyl)amino]-1-hydroxy-3-(2-oxo-2H-pyrrol-3-yl)propyl]phosphonate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4XBB _cell.length_a 124.171 _cell.length_b 124.171 _cell.length_c 49.969 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XBB _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z+2/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 33.312667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 84 A CYS 77 1_555 A SG CYS 161 A CYS 154 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.087 ? covale ? covale1 A SG CYS 146 A CYS 139 1_555 B C31 3ZR . A 3ZR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.813 ? # _chem_comp.formula 'C28 H39 Cl N3 O8 P' _chem_comp.formula_weight 612.051 _chem_comp.id 3ZR _chem_comp.mon_nstd_flag . _chem_comp.name 'diethyl [(1R,2S)-2-[(N-{[(3-chlorobenzyl)oxy]carbonyl}-3-cyclohexyl-L-alanyl)amino]-1-hydroxy-3-(2-oxo-2H-pyrrol-3-yl)propyl]phosphonate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O32 C31 3ZR sing 1 n n C31 C23 3ZR sing 2 n n C23 N22 3ZR sing 3 n n C23 C24 3ZR sing 4 n n C18 C19 3ZR sing 5 n n C18 C17 3ZR sing 6 n n C20 C19 3ZR sing 7 n n C20 C15 3ZR sing 8 n n N22 C21 3ZR sing 9 n n C16 C17 3ZR sing 10 n n C16 C15 3ZR sing 11 n n C24 C25 3ZR sing 12 n n C14 C15 3ZR sing 13 n n C14 C13 3ZR sing 14 n n C21 C13 3ZR sing 15 n n C21 O41 3ZR doub 16 n n C13 N12 3ZR sing 17 n n O30 C29 3ZR doub 18 n n C25 C29 3ZR sing 19 n n C25 C26 3ZR doub 20 n n C29 N28 3ZR sing 21 n n C26 C27 3ZR sing 22 n n N12 C02 3ZR sing 23 n n O01 C02 3ZR doub 24 n n N28 C27 3ZR doub 25 n n C02 O03 3ZR sing 26 n n O03 C04 3ZR sing 27 n n CL C09 3ZR sing 28 n n C11 C09 3ZR doub 29 n y C11 C05 3ZR sing 30 n y C04 C05 3ZR sing 31 n n C09 C08 3ZR sing 32 n y C05 C06 3ZR doub 33 n y C08 C07 3ZR doub 34 n y C06 C07 3ZR sing 35 n y C13 H1 3ZR sing 36 n n C14 H2 3ZR sing 37 n n C14 H3 3ZR sing 38 n n C15 H4 3ZR sing 39 n n C16 H5 3ZR sing 40 n n C16 H6 3ZR sing 41 n n C17 H7 3ZR sing 42 n n C17 H8 3ZR sing 43 n n C18 H9 3ZR sing 44 n n C18 H10 3ZR sing 45 n n C19 H11 3ZR sing 46 n n C19 H12 3ZR sing 47 n n C20 H13 3ZR sing 48 n n C20 H14 3ZR sing 49 n n C24 H15 3ZR sing 50 n n C24 H16 3ZR sing 51 n n C27 H17 3ZR sing 52 n n C31 H18 3ZR sing 53 n n C04 H20 3ZR sing 54 n n C04 H21 3ZR sing 55 n n C06 H22 3ZR sing 56 n n C07 H23 3ZR sing 57 n n C08 H24 3ZR sing 58 n n C11 H25 3ZR sing 59 n n N12 H26 3ZR sing 60 n n N22 H27 3ZR sing 61 n n C23 H28 3ZR sing 62 n n C26 H29 3ZR sing 63 n n O32 H30 3ZR sing 64 n n C31 P1 3ZR sing 65 n n P1 O1 3ZR doub 66 n n P1 O2 3ZR sing 67 n n P1 O3 3ZR sing 68 n n O3 C5 3ZR sing 69 n n C5 C6 3ZR sing 70 n n O2 C7 3ZR sing 71 n n C7 C8 3ZR sing 72 n n C5 H19 3ZR sing 73 n n C5 H31 3ZR sing 74 n n C6 H32 3ZR sing 75 n n C6 H33 3ZR sing 76 n n C6 H34 3ZR sing 77 n n C7 H35 3ZR sing 78 n n C7 H36 3ZR sing 79 n n C8 H37 3ZR sing 80 n n C8 H38 3ZR sing 81 n n C8 H39 3ZR sing 82 n n # _atom_sites.entry_id 4XBB _atom_sites.fract_transf_matrix[1][1] 0.008053 _atom_sites.fract_transf_matrix[1][2] 0.00465 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009299 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020012 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3ZR A 1 201 1 3ZR A61 . C 3 SO4 A 1 202 1 SO4 SO4 . D 4 HOH A 1 301 82 HOH HOH . D 4 HOH A 2 302 80 HOH HOH . D 4 HOH A 3 303 99 HOH HOH . D 4 HOH A 4 304 97 HOH HOH . D 4 HOH A 5 305 103 HOH HOH . D 4 HOH A 6 306 108 HOH HOH . D 4 HOH A 7 307 122 HOH HOH . D 4 HOH A 8 308 9 HOH HOH . D 4 HOH A 9 309 61 HOH HOH . D 4 HOH A 10 310 87 HOH HOH . D 4 HOH A 11 311 94 HOH HOH . D 4 HOH A 12 312 20 HOH HOH . D 4 HOH A 13 313 84 HOH HOH . D 4 HOH A 14 314 65 HOH HOH . D 4 HOH A 15 315 75 HOH HOH . D 4 HOH A 16 316 38 HOH HOH . D 4 HOH A 17 317 21 HOH HOH . D 4 HOH A 18 318 6 HOH HOH . D 4 HOH A 19 319 100 HOH HOH . D 4 HOH A 20 320 59 HOH HOH . D 4 HOH A 21 321 46 HOH HOH . D 4 HOH A 22 322 43 HOH HOH . D 4 HOH A 23 323 16 HOH HOH . D 4 HOH A 24 324 44 HOH HOH . D 4 HOH A 25 325 57 HOH HOH . D 4 HOH A 26 326 106 HOH HOH . D 4 HOH A 27 327 33 HOH HOH . D 4 HOH A 28 328 26 HOH HOH . D 4 HOH A 29 329 42 HOH HOH . D 4 HOH A 30 330 4 HOH HOH . D 4 HOH A 31 331 58 HOH HOH . D 4 HOH A 32 332 77 HOH HOH . D 4 HOH A 33 333 71 HOH HOH . D 4 HOH A 34 334 124 HOH HOH . D 4 HOH A 35 335 101 HOH HOH . D 4 HOH A 36 336 93 HOH HOH . D 4 HOH A 37 337 121 HOH HOH . D 4 HOH A 38 338 17 HOH HOH . D 4 HOH A 39 339 34 HOH HOH . D 4 HOH A 40 340 98 HOH HOH . D 4 HOH A 41 341 105 HOH HOH . D 4 HOH A 42 342 1 HOH HOH . D 4 HOH A 43 343 11 HOH HOH . D 4 HOH A 44 344 25 HOH HOH . D 4 HOH A 45 345 62 HOH HOH . D 4 HOH A 46 346 91 HOH HOH . D 4 HOH A 47 347 14 HOH HOH . D 4 HOH A 48 348 39 HOH HOH . D 4 HOH A 49 349 66 HOH HOH . D 4 HOH A 50 350 73 HOH HOH . D 4 HOH A 51 351 35 HOH HOH . D 4 HOH A 52 352 19 HOH HOH . D 4 HOH A 53 353 110 HOH HOH . D 4 HOH A 54 354 95 HOH HOH . D 4 HOH A 55 355 119 HOH HOH . D 4 HOH A 56 356 24 HOH HOH . D 4 HOH A 57 357 52 HOH HOH . D 4 HOH A 58 358 83 HOH HOH . D 4 HOH A 59 359 2 HOH HOH . D 4 HOH A 60 360 3 HOH HOH . D 4 HOH A 61 361 5 HOH HOH . D 4 HOH A 62 362 7 HOH HOH . D 4 HOH A 63 363 8 HOH HOH . D 4 HOH A 64 364 10 HOH HOH . D 4 HOH A 65 365 12 HOH HOH . D 4 HOH A 66 366 13 HOH HOH . D 4 HOH A 67 367 15 HOH HOH . D 4 HOH A 68 368 18 HOH HOH . D 4 HOH A 69 369 22 HOH HOH . D 4 HOH A 70 370 23 HOH HOH . D 4 HOH A 71 371 27 HOH HOH . D 4 HOH A 72 372 28 HOH HOH . D 4 HOH A 73 373 29 HOH HOH . D 4 HOH A 74 374 30 HOH HOH . D 4 HOH A 75 375 31 HOH HOH . D 4 HOH A 76 376 32 HOH HOH . D 4 HOH A 77 377 36 HOH HOH . D 4 HOH A 78 378 37 HOH HOH . D 4 HOH A 79 379 40 HOH HOH . D 4 HOH A 80 380 41 HOH HOH . D 4 HOH A 81 381 45 HOH HOH . D 4 HOH A 82 382 47 HOH HOH . D 4 HOH A 83 383 48 HOH HOH . D 4 HOH A 84 384 49 HOH HOH . D 4 HOH A 85 385 50 HOH HOH . D 4 HOH A 86 386 51 HOH HOH . D 4 HOH A 87 387 53 HOH HOH . D 4 HOH A 88 388 54 HOH HOH . D 4 HOH A 89 389 55 HOH HOH . D 4 HOH A 90 390 56 HOH HOH . D 4 HOH A 91 391 60 HOH HOH . D 4 HOH A 92 392 63 HOH HOH . D 4 HOH A 93 393 64 HOH HOH . D 4 HOH A 94 394 67 HOH HOH . D 4 HOH A 95 395 68 HOH HOH . D 4 HOH A 96 396 69 HOH HOH . D 4 HOH A 97 397 70 HOH HOH . D 4 HOH A 98 398 72 HOH HOH . D 4 HOH A 99 399 74 HOH HOH . D 4 HOH A 100 400 76 HOH HOH . D 4 HOH A 101 401 78 HOH HOH . D 4 HOH A 102 402 79 HOH HOH . D 4 HOH A 103 403 81 HOH HOH . D 4 HOH A 104 404 85 HOH HOH . D 4 HOH A 105 405 86 HOH HOH . D 4 HOH A 106 406 88 HOH HOH . D 4 HOH A 107 407 89 HOH HOH . D 4 HOH A 108 408 90 HOH HOH . D 4 HOH A 109 409 92 HOH HOH . D 4 HOH A 110 410 96 HOH HOH . D 4 HOH A 111 411 102 HOH HOH . D 4 HOH A 112 412 104 HOH HOH . D 4 HOH A 113 413 107 HOH HOH . D 4 HOH A 114 414 109 HOH HOH . D 4 HOH A 115 415 111 HOH HOH . D 4 HOH A 116 416 112 HOH HOH . D 4 HOH A 117 417 113 HOH HOH . D 4 HOH A 118 418 114 HOH HOH . D 4 HOH A 119 419 115 HOH HOH . D 4 HOH A 120 420 116 HOH HOH . D 4 HOH A 121 421 117 HOH HOH . D 4 HOH A 122 422 118 HOH HOH . D 4 HOH A 123 423 120 HOH HOH . D 4 HOH A 124 424 123 HOH HOH . D 4 HOH A 125 425 125 HOH HOH . D 4 HOH A 126 426 126 HOH HOH . D 4 HOH A 127 427 127 HOH HOH . D 4 HOH A 128 428 128 HOH HOH . D 4 HOH A 129 429 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 3ZR . . . B 2 39.481 38.74 12.559 1 19.62 ? C13 3ZR 201 A 1 HETATM 2 C C14 3ZR . . . B 2 40.21 39.859 11.826 1 19.97 ? C14 3ZR 201 A 1 HETATM 3 C C15 3ZR . . . B 2 39.537 41.229 12.004 1 21.71 ? C15 3ZR 201 A 1 HETATM 4 C C16 3ZR . . . B 2 38.113 41.262 11.444 1 19.96 ? C16 3ZR 201 A 1 HETATM 5 C C17 3ZR . . . B 2 37.513 42.666 11.524 1 21.09 ? C17 3ZR 201 A 1 HETATM 6 C C18 3ZR . . . B 2 38.404 43.705 10.877 1 23.71 ? C18 3ZR 201 A 1 HETATM 7 C C19 3ZR . . . B 2 39.821 43.656 11.433 1 25.24 ? C19 3ZR 201 A 1 HETATM 8 C C20 3ZR . . . B 2 40.396 42.26 11.28 1 27.14 ? C20 3ZR 201 A 1 HETATM 9 C C21 3ZR . . . B 2 40.11 37.416 12.222 1 21.46 ? C21 3ZR 201 A 1 HETATM 10 C C24 3ZR . . . B 2 38.793 34.275 11.463 1 18.06 ? C24 3ZR 201 A 1 HETATM 11 C C25 3ZR . . . B 2 38.977 33.785 12.884 1 23.5 ? C25 3ZR 201 A 1 HETATM 12 C C27 3ZR . . . B 2 39.696 33.158 14.904 1 22.15 ? C27 3ZR 201 A 1 HETATM 13 C C29 3ZR . . . B 2 38.041 32.919 13.454 1 20.47 ? C29 3ZR 201 A 1 HETATM 14 C C31 3ZR . . . B 2 39.984 35.223 9.391 1 19.7 ? C31 3ZR 201 A 1 HETATM 15 O O01 3ZR . . . B 2 38.242 37.127 14.6 1 16.82 ? O01 3ZR 201 A 1 HETATM 16 C C02 3ZR . . . B 2 38.912 38.129 14.853 1 26.02 ? C02 3ZR 201 A 1 HETATM 17 O O03 3ZR . . . B 2 39.156 38.522 16.225 1 24.63 ? O03 3ZR 201 A 1 HETATM 18 C C04 3ZR . . . B 2 38.55 37.9 17.368 1 44.36 ? C04 3ZR 201 A 1 HETATM 19 C C05 3ZR . . . B 2 37.24 38.578 17.756 1 40.3 ? C05 3ZR 201 A 1 HETATM 20 C C06 3ZR . . . B 2 37.197 39.44 18.683 1 37.89 ? C06 3ZR 201 A 1 HETATM 21 C C07 3ZR . . . B 2 36.118 40.032 19.006 1 43.75 ? C07 3ZR 201 A 1 HETATM 22 C C08 3ZR . . . B 2 34.997 39.715 18.514 1 40.65 ? C08 3ZR 201 A 1 HETATM 23 C C09 3ZR . . . B 2 34.95 38.807 17.53 1 38.46 ? C09 3ZR 201 A 1 HETATM 24 CL CL 3ZR . . . B 2 33.426 38.311 16.782 1 44.51 ? CL 3ZR 201 A 1 HETATM 25 C C11 3ZR . . . B 2 36.102 38.249 17.125 1 36.48 ? C11 3ZR 201 A 1 HETATM 26 N N12 3ZR . . . B 2 39.495 38.945 13.979 1 21.68 ? N12 3ZR 201 A 1 HETATM 27 N N22 3ZR . . . B 2 39.441 36.739 11.318 1 17.19 ? N22 3ZR 201 A 1 HETATM 28 C C23 3ZR . . . B 2 39.557 35.408 10.829 1 17.87 ? C23 3ZR 201 A 1 HETATM 29 C C26 3ZR . . . B 2 40.037 33.912 13.775 1 22.3 ? C26 3ZR 201 A 1 HETATM 30 N N28 3ZR . . . B 2 38.487 32.546 14.678 1 19.83 ? N28 3ZR 201 A 1 HETATM 31 O O30 3ZR . . . B 2 36.931 32.543 12.883 1 16.59 ? O30 3ZR 201 A 1 HETATM 32 O O32 3ZR . . . B 2 40.964 36.191 8.985 1 17.85 ? O32 3ZR 201 A 1 HETATM 33 O O41 3ZR . . . B 2 41.114 37.01 12.766 1 18.26 ? O41 3ZR 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 33 #