data_4XBC # _model_server_result.job_id KXCx7fkO7q8cyVXVmA7LRw _model_server_result.datetime_utc '2025-09-16 14:11:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xbc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4XBC # _exptl.entry_id 4XBC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 525.615 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R,2S)-2-({N-[(benzyloxy)carbonyl]-3-cyclohexyl-L-alanyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4XBC _cell.length_a 121.853 _cell.length_b 121.853 _cell.length_c 51.498 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XBC _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 146 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 139 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C30 _struct_conn.ptnr2_label_comp_id M40 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id M40 _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.804 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C24 H35 N3 O8 S' _chem_comp.formula_weight 525.615 _chem_comp.id M40 _chem_comp.mon_nstd_flag . _chem_comp.name '(1R,2S)-2-({N-[(benzyloxy)carbonyl]-3-cyclohexyl-L-alanyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O31 C30 M40 sing 218 n n C30 C22 M40 sing 219 n n C17 C16 M40 sing 220 n n C17 C18 M40 sing 221 n n C22 C23 M40 sing 222 n n C22 N21 M40 sing 223 n n C16 C15 M40 sing 224 n n C15 C14 M40 sing 225 n n C23 C24 M40 sing 226 n n N21 C20 M40 sing 227 n n C19 C18 M40 sing 228 n n C19 C14 M40 sing 229 n n C13 C14 M40 sing 230 n n C13 C12 M40 sing 231 n n C20 C12 M40 sing 232 n n C20 O32 M40 doub 233 n n C12 N11 M40 sing 234 n n O29 C28 M40 doub 235 n n C24 C28 M40 sing 236 n n C24 C25 M40 sing 237 n n C28 N27 M40 sing 238 n n C25 C26 M40 sing 239 n n N11 C02 M40 sing 240 n n N27 C26 M40 sing 241 n n O01 C02 M40 doub 242 n n C02 O03 M40 sing 243 n n O03 C04 M40 sing 244 n n C04 C05 M40 sing 245 n n C10 C05 M40 doub 246 n y C10 C09 M40 sing 247 n y C05 C06 M40 sing 248 n y C09 C08 M40 doub 249 n y C06 C07 M40 doub 250 n y C08 C07 M40 sing 251 n y C04 H1 M40 sing 252 n n C06 H3 M40 sing 253 n n C13 H10 M40 sing 254 n n C13 H11 M40 sing 255 n n C14 H12 M40 sing 256 n n C15 H13 M40 sing 257 n n C15 H14 M40 sing 258 n n C16 H15 M40 sing 259 n n C16 H16 M40 sing 260 n n C17 H17 M40 sing 261 n n C17 H18 M40 sing 262 n n C18 H19 M40 sing 263 n n C18 H20 M40 sing 264 n n C19 H21 M40 sing 265 n n C19 H22 M40 sing 266 n n N21 H23 M40 sing 267 n n C22 H24 M40 sing 268 n n C23 H25 M40 sing 269 n n C23 H26 M40 sing 270 n n C24 H27 M40 sing 271 n n C25 H28 M40 sing 272 n n C25 H29 M40 sing 273 n n C26 H30 M40 sing 274 n n C26 H31 M40 sing 275 n n N27 H32 M40 sing 276 n n O31 H35 M40 sing 277 n n S1 O2 M40 doub 278 n n S1 O3 M40 sing 279 n n S1 O4 M40 doub 280 n n S1 C30 M40 sing 281 n n C04 H4 M40 sing 282 n n C07 H2 M40 sing 283 n n C08 H5 M40 sing 284 n n C09 H6 M40 sing 285 n n C10 H7 M40 sing 286 n n N11 H8 M40 sing 287 n n C12 H9 M40 sing 288 n n O3 H33 M40 sing 289 n n C30 H34 M40 sing 290 n n # _atom_sites.entry_id 4XBC _atom_sites.fract_transf_matrix[1][1] 0.008207 _atom_sites.fract_transf_matrix[1][2] 0.004738 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009476 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019418 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 M40 A 1 201 1 M40 M40 . C 3 PG4 A 1 202 1 PG4 PG4 . D 4 HOH A 1 301 132 HOH HOH . D 4 HOH A 2 302 17 HOH HOH . D 4 HOH A 3 303 127 HOH HOH . D 4 HOH A 4 304 110 HOH HOH . D 4 HOH A 5 305 101 HOH HOH . D 4 HOH A 6 306 70 HOH HOH . D 4 HOH A 7 307 69 HOH HOH . D 4 HOH A 8 308 67 HOH HOH . D 4 HOH A 9 309 91 HOH HOH . D 4 HOH A 10 310 115 HOH HOH . D 4 HOH A 11 311 97 HOH HOH . D 4 HOH A 12 312 98 HOH HOH . D 4 HOH A 13 313 64 HOH HOH . D 4 HOH A 14 314 154 HOH HOH . D 4 HOH A 15 315 107 HOH HOH . D 4 HOH A 16 316 158 HOH HOH . D 4 HOH A 17 317 50 HOH HOH . D 4 HOH A 18 318 49 HOH HOH . D 4 HOH A 19 319 29 HOH HOH . D 4 HOH A 20 320 131 HOH HOH . D 4 HOH A 21 321 100 HOH HOH . D 4 HOH A 22 322 27 HOH HOH . D 4 HOH A 23 323 41 HOH HOH . D 4 HOH A 24 324 3 HOH HOH . D 4 HOH A 25 325 93 HOH HOH . D 4 HOH A 26 326 32 HOH HOH . D 4 HOH A 27 327 24 HOH HOH . D 4 HOH A 28 328 86 HOH HOH . D 4 HOH A 29 329 79 HOH HOH . D 4 HOH A 30 330 21 HOH HOH . D 4 HOH A 31 331 43 HOH HOH . D 4 HOH A 32 332 108 HOH HOH . D 4 HOH A 33 333 148 HOH HOH . D 4 HOH A 34 334 153 HOH HOH . D 4 HOH A 35 335 156 HOH HOH . D 4 HOH A 36 336 128 HOH HOH . D 4 HOH A 37 337 150 HOH HOH . D 4 HOH A 38 338 105 HOH HOH . D 4 HOH A 39 339 84 HOH HOH . D 4 HOH A 40 340 146 HOH HOH . D 4 HOH A 41 341 135 HOH HOH . D 4 HOH A 42 342 66 HOH HOH . D 4 HOH A 43 343 39 HOH HOH . D 4 HOH A 44 344 103 HOH HOH . D 4 HOH A 45 345 104 HOH HOH . D 4 HOH A 46 346 6 HOH HOH . D 4 HOH A 47 347 137 HOH HOH . D 4 HOH A 48 348 157 HOH HOH . D 4 HOH A 49 349 155 HOH HOH . D 4 HOH A 50 350 136 HOH HOH . D 4 HOH A 51 351 60 HOH HOH . D 4 HOH A 52 352 57 HOH HOH . D 4 HOH A 53 353 68 HOH HOH . D 4 HOH A 54 354 23 HOH HOH . D 4 HOH A 55 355 36 HOH HOH . D 4 HOH A 56 356 116 HOH HOH . D 4 HOH A 57 357 1 HOH HOH . D 4 HOH A 58 358 40 HOH HOH . D 4 HOH A 59 359 151 HOH HOH . D 4 HOH A 60 360 138 HOH HOH . D 4 HOH A 61 361 117 HOH HOH . D 4 HOH A 62 362 125 HOH HOH . D 4 HOH A 63 363 129 HOH HOH . D 4 HOH A 64 364 122 HOH HOH . D 4 HOH A 65 365 81 HOH HOH . D 4 HOH A 66 366 33 HOH HOH . D 4 HOH A 67 367 145 HOH HOH . D 4 HOH A 68 368 144 HOH HOH . D 4 HOH A 69 369 85 HOH HOH . D 4 HOH A 70 370 88 HOH HOH . D 4 HOH A 71 371 142 HOH HOH . D 4 HOH A 72 372 34 HOH HOH . D 4 HOH A 73 373 118 HOH HOH . D 4 HOH A 74 374 42 HOH HOH . D 4 HOH A 75 375 8 HOH HOH . D 4 HOH A 76 376 124 HOH HOH . D 4 HOH A 77 377 147 HOH HOH . D 4 HOH A 78 378 119 HOH HOH . D 4 HOH A 79 379 2 HOH HOH . D 4 HOH A 80 380 4 HOH HOH . D 4 HOH A 81 381 5 HOH HOH . D 4 HOH A 82 382 7 HOH HOH . D 4 HOH A 83 383 9 HOH HOH . D 4 HOH A 84 384 10 HOH HOH . D 4 HOH A 85 385 11 HOH HOH . D 4 HOH A 86 386 12 HOH HOH . D 4 HOH A 87 387 13 HOH HOH . D 4 HOH A 88 388 14 HOH HOH . D 4 HOH A 89 389 15 HOH HOH . D 4 HOH A 90 390 16 HOH HOH . D 4 HOH A 91 391 18 HOH HOH . D 4 HOH A 92 392 19 HOH HOH . D 4 HOH A 93 393 20 HOH HOH . D 4 HOH A 94 394 22 HOH HOH . D 4 HOH A 95 395 25 HOH HOH . D 4 HOH A 96 396 26 HOH HOH . D 4 HOH A 97 397 28 HOH HOH . D 4 HOH A 98 398 30 HOH HOH . D 4 HOH A 99 399 31 HOH HOH . D 4 HOH A 100 400 35 HOH HOH . D 4 HOH A 101 401 37 HOH HOH . D 4 HOH A 102 402 38 HOH HOH . D 4 HOH A 103 403 44 HOH HOH . D 4 HOH A 104 404 45 HOH HOH . D 4 HOH A 105 405 46 HOH HOH . D 4 HOH A 106 406 47 HOH HOH . D 4 HOH A 107 407 48 HOH HOH . D 4 HOH A 108 408 51 HOH HOH . D 4 HOH A 109 409 52 HOH HOH . D 4 HOH A 110 410 53 HOH HOH . D 4 HOH A 111 411 54 HOH HOH . D 4 HOH A 112 412 55 HOH HOH . D 4 HOH A 113 413 56 HOH HOH . D 4 HOH A 114 414 58 HOH HOH . D 4 HOH A 115 415 59 HOH HOH . D 4 HOH A 116 416 61 HOH HOH . D 4 HOH A 117 417 62 HOH HOH . D 4 HOH A 118 418 63 HOH HOH . D 4 HOH A 119 419 65 HOH HOH . D 4 HOH A 120 420 71 HOH HOH . D 4 HOH A 121 421 72 HOH HOH . D 4 HOH A 122 422 73 HOH HOH . D 4 HOH A 123 423 74 HOH HOH . D 4 HOH A 124 424 75 HOH HOH . D 4 HOH A 125 425 76 HOH HOH . D 4 HOH A 126 426 77 HOH HOH . D 4 HOH A 127 427 78 HOH HOH . D 4 HOH A 128 428 80 HOH HOH . D 4 HOH A 129 429 82 HOH HOH . D 4 HOH A 130 430 83 HOH HOH . D 4 HOH A 131 431 87 HOH HOH . D 4 HOH A 132 432 89 HOH HOH . D 4 HOH A 133 433 90 HOH HOH . D 4 HOH A 134 434 92 HOH HOH . D 4 HOH A 135 435 94 HOH HOH . D 4 HOH A 136 436 95 HOH HOH . D 4 HOH A 137 437 96 HOH HOH . D 4 HOH A 138 438 99 HOH HOH . D 4 HOH A 139 439 102 HOH HOH . D 4 HOH A 140 440 106 HOH HOH . D 4 HOH A 141 441 109 HOH HOH . D 4 HOH A 142 442 111 HOH HOH . D 4 HOH A 143 443 112 HOH HOH . D 4 HOH A 144 444 113 HOH HOH . D 4 HOH A 145 445 114 HOH HOH . D 4 HOH A 146 446 120 HOH HOH . D 4 HOH A 147 447 121 HOH HOH . D 4 HOH A 148 448 123 HOH HOH . D 4 HOH A 149 449 126 HOH HOH . D 4 HOH A 150 450 130 HOH HOH . D 4 HOH A 151 451 133 HOH HOH . D 4 HOH A 152 452 134 HOH HOH . D 4 HOH A 153 453 139 HOH HOH . D 4 HOH A 154 454 140 HOH HOH . D 4 HOH A 155 455 141 HOH HOH . D 4 HOH A 156 456 143 HOH HOH . D 4 HOH A 157 457 149 HOH HOH . D 4 HOH A 158 458 152 HOH HOH . D 4 HOH A 159 459 159 HOH HOH . D 4 HOH A 160 460 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 M40 . . . B 2 36.485 36.637 15.145 1 14.72 ? O01 M40 201 A 1 HETATM 2 C C02 M40 . . . B 2 37.248 37.549 15.483 1 17.01 ? C02 M40 201 A 1 HETATM 3 O O03 M40 . . . B 2 37.593 37.747 16.803 1 17.04 ? O03 M40 201 A 1 HETATM 4 C C04 M40 . . . B 2 37.03 36.993 17.83 1 27.94 ? C04 M40 201 A 1 HETATM 5 C C05 M40 . . . B 2 37.946 35.966 18.433 1 36.22 ? C05 M40 201 A 1 HETATM 6 C C06 M40 . . . B 2 39.156 36.356 19.024 1 44.38 ? C06 M40 201 A 1 HETATM 7 C C07 M40 . . . B 2 40.004 35.393 19.571 1 40.58 ? C07 M40 201 A 1 HETATM 8 C C08 M40 . . . B 2 39.651 34.063 19.522 1 34.29 ? C08 M40 201 A 1 HETATM 9 C C09 M40 . . . B 2 38.441 33.677 18.93 1 24.02 ? C09 M40 201 A 1 HETATM 10 C C10 M40 . . . B 2 37.588 34.637 18.395 1 24.13 ? C10 M40 201 A 1 HETATM 11 N N11 M40 . . . B 2 38.107 38.276 14.546 1 13.35 ? N11 M40 201 A 1 HETATM 12 C C12 M40 . . . B 2 37.895 38.007 13.159 1 11.46 ? C12 M40 201 A 1 HETATM 13 C C13 M40 . . . B 2 38.522 39.123 12.368 1 12.85 ? C13 M40 201 A 1 HETATM 14 C C14 M40 . . . B 2 37.925 40.544 12.488 1 14.42 ? C14 M40 201 A 1 HETATM 15 C C15 M40 . . . B 2 38.709 41.473 11.625 1 18.12 ? C15 M40 201 A 1 HETATM 16 C C16 M40 . . . B 2 38.111 42.859 11.587 1 23.09 ? C16 M40 201 A 1 HETATM 17 C C17 M40 . . . B 2 36.664 42.832 11.291 1 18.45 ? C17 M40 201 A 1 HETATM 18 C C18 M40 . . . B 2 35.882 41.918 12.199 1 22.11 ? C18 M40 201 A 1 HETATM 19 C C19 M40 . . . B 2 36.467 40.551 12.145 1 16.83 ? C19 M40 201 A 1 HETATM 20 C C20 M40 . . . B 2 38.567 36.751 12.798 1 13.57 ? C20 M40 201 A 1 HETATM 21 N N21 M40 . . . B 2 37.934 35.955 11.805 1 8.96 ? N21 M40 201 A 1 HETATM 22 C C22 M40 . . . B 2 38.475 34.687 11.351 1 8.79 ? C22 M40 201 A 1 HETATM 23 C C23 M40 . . . B 2 37.592 33.566 11.798 1 10.44 ? C23 M40 201 A 1 HETATM 24 C C24 M40 . . . B 2 37.438 33.413 13.359 1 11.17 ? C24 M40 201 A 1 HETATM 25 C C25 M40 . . . B 2 38.758 33.169 14.035 1 14.36 ? C25 M40 201 A 1 HETATM 26 C C26 M40 . . . B 2 38.371 32.355 15.271 1 13.88 ? C26 M40 201 A 1 HETATM 27 N N27 M40 . . . B 2 37.11 31.684 14.925 1 13.1 ? N27 M40 201 A 1 HETATM 28 C C28 M40 . . . B 2 36.554 32.297 13.763 1 13.01 ? C28 M40 201 A 1 HETATM 29 O O29 M40 . . . B 2 35.515 31.939 13.268 1 11.96 ? O29 M40 201 A 1 HETATM 30 O O31 M40 . . . B 2 39.612 35.581 9.521 1 12.56 ? O31 M40 201 A 1 HETATM 31 O O32 M40 . . . B 2 39.614 36.408 13.319 1 15.63 ? O32 M40 201 A 1 HETATM 32 C C30 M40 . . . B 2 38.615 34.684 9.864 1 13.09 1 C30 M40 201 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #