data_4XBF
#
_model_server_result.job_id            DnH6i0SgVbj-pPpJCF6LGA 
_model_server_result.datetime_utc      '2024-11-14 23:50:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xbf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":901}' 
#
_entry.id    4XBF 
#
_exptl.entry_id    4XBF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4XBF 
_cell.length_a            121.073 
_cell.length_b            178.411 
_cell.length_c            234.676 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XBF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_865 -x+3,-y+1,z -1 0 0 0 -1 0 0 0 1 363.219 178.411 0 
3 'crystal symmetry operation' 3_855 -x+3,y,-z -1 0 0 0 1 0 0 0 -1 363.219 0 0 
4 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 178.411 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 122 n n 
PA O2A FAD sing 123 n n 
PA O5B FAD sing 124 n n 
PA O3P FAD sing 125 n n 
O2A HOA2 FAD sing 126 n n 
O5B C5B FAD sing 127 n n 
C5B C4B FAD sing 128 n n 
C5B H51A FAD sing 129 n n 
C5B H52A FAD sing 130 n n 
C4B O4B FAD sing 131 n n 
C4B C3B FAD sing 132 n n 
C4B H4B FAD sing 133 n n 
O4B C1B FAD sing 134 n n 
C3B O3B FAD sing 135 n n 
C3B C2B FAD sing 136 n n 
C3B H3B FAD sing 137 n n 
O3B HO3A FAD sing 138 n n 
C2B O2B FAD sing 139 n n 
C2B C1B FAD sing 140 n n 
C2B H2B FAD sing 141 n n 
O2B HO2A FAD sing 142 n n 
C1B N9A FAD sing 143 n n 
C1B H1B FAD sing 144 n n 
N9A C8A FAD sing 145 n y 
N9A C4A FAD sing 146 n y 
C8A N7A FAD doub 147 n y 
C8A H8A FAD sing 148 n n 
N7A C5A FAD sing 149 n y 
C5A C6A FAD sing 150 n y 
C5A C4A FAD doub 151 n y 
C6A N6A FAD sing 152 n n 
C6A N1A FAD doub 153 n y 
N6A H61A FAD sing 154 n n 
N6A H62A FAD sing 155 n n 
N1A C2A FAD sing 156 n y 
C2A N3A FAD doub 157 n y 
C2A H2A FAD sing 158 n n 
N3A C4A FAD sing 159 n y 
N1 C2 FAD sing 160 n n 
N1 C10 FAD doub 161 n n 
C2 O2 FAD doub 162 n n 
C2 N3 FAD sing 163 n n 
N3 C4 FAD sing 164 n n 
N3 HN3 FAD sing 165 n n 
C4 O4 FAD doub 166 n n 
C4 C4X FAD sing 167 n n 
C4X N5 FAD doub 168 n n 
C4X C10 FAD sing 169 n n 
N5 C5X FAD sing 170 n n 
C5X C6 FAD doub 171 n y 
C5X C9A FAD sing 172 n y 
C6 C7 FAD sing 173 n y 
C6 H6 FAD sing 174 n n 
C7 C7M FAD sing 175 n n 
C7 C8 FAD doub 176 n y 
C7M HM71 FAD sing 177 n n 
C7M HM72 FAD sing 178 n n 
C7M HM73 FAD sing 179 n n 
C8 C8M FAD sing 180 n n 
C8 C9 FAD sing 181 n y 
C8M HM81 FAD sing 182 n n 
C8M HM82 FAD sing 183 n n 
C8M HM83 FAD sing 184 n n 
C9 C9A FAD doub 185 n y 
C9 H9 FAD sing 186 n n 
C9A N10 FAD sing 187 n n 
N10 C10 FAD sing 188 n n 
N10 C1' FAD sing 189 n n 
C1' C2' FAD sing 190 n n 
C1' "H1'1" FAD sing 191 n n 
C1' "H1'2" FAD sing 192 n n 
C2' O2' FAD sing 193 n n 
C2' C3' FAD sing 194 n n 
C2' H2' FAD sing 195 n n 
O2' HO2' FAD sing 196 n n 
C3' O3' FAD sing 197 n n 
C3' C4' FAD sing 198 n n 
C3' H3' FAD sing 199 n n 
O3' HO3' FAD sing 200 n n 
C4' O4' FAD sing 201 n n 
C4' C5' FAD sing 202 n n 
C4' H4' FAD sing 203 n n 
O4' HO4' FAD sing 204 n n 
C5' O5' FAD sing 205 n n 
C5' "H5'1" FAD sing 206 n n 
C5' "H5'2" FAD sing 207 n n 
O5' P FAD sing 208 n n 
P O1P FAD doub 209 n n 
P O2P FAD sing 210 n n 
P O3P FAD sing 211 n n 
O2P HOP2 FAD sing 212 n n 
#
_atom_sites.entry_id                     4XBF 
_atom_sites.fract_transf_matrix[1][1]    0.008259 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005605 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004261 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 FAD A 1 901 901 FAD FAD . 
E 5 SO4 A 1 902 1 SO4 SO4 . 
F 5 SO4 A 1 903 2 SO4 SO4 . 
G 5 SO4 A 1 904 3 SO4 SO4 . 
H 5 SO4 A 1 905 4 SO4 SO4 . 
I 5 SO4 A 1 906 5 SO4 SO4 . 
J 6 GOL A 1 907 4 GOL GOL . 
K 7 HOH A 1 1001 21 HOH HOH . 
K 7 HOH A 2 1002 1 HOH HOH . 
K 7 HOH A 3 1003 3 HOH HOH . 
K 7 HOH A 4 1004 6 HOH HOH . 
K 7 HOH A 5 1005 7 HOH HOH . 
K 7 HOH A 6 1006 8 HOH HOH . 
K 7 HOH A 7 1007 11 HOH HOH . 
K 7 HOH A 8 1008 12 HOH HOH . 
K 7 HOH A 9 1009 13 HOH HOH . 
K 7 HOH A 10 1010 14 HOH HOH . 
K 7 HOH A 11 1011 15 HOH HOH . 
K 7 HOH A 12 1012 16 HOH HOH . 
K 7 HOH A 13 1013 17 HOH HOH . 
K 7 HOH A 14 1014 18 HOH HOH . 
K 7 HOH A 15 1015 19 HOH HOH . 
K 7 HOH A 16 1016 20 HOH HOH . 
K 7 HOH A 17 1017 23 HOH HOH . 
K 7 HOH A 18 1018 24 HOH HOH . 
K 7 HOH A 19 1019 25 HOH HOH . 
K 7 HOH A 20 1020 26 HOH HOH . 
L 7 HOH B 1 501 10 HOH HOH . 
L 7 HOH B 2 502 27 HOH HOH . 
M 7 HOH D 1 101 5 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . D 4 188.095 67.461 28.656 1 21.06 ? PA FAD 901 A 1 
HETATM 2 O O1A FAD . . . D 4 187.223 67.932 29.829 1 22.15 ? O1A FAD 901 A 1 
HETATM 3 O O2A FAD . . . D 4 189.375 66.858 29.171 1 27.87 ? O2A FAD 901 A 1 
HETATM 4 O O5B FAD . . . D 4 188.462 68.739 27.65 1 29.32 ? O5B FAD 901 A 1 
HETATM 5 C C5B FAD . . . D 4 187.505 69.806 27.546 1 29.41 ? C5B FAD 901 A 1 
HETATM 6 C C4B FAD . . . D 4 188.274 71.166 27.69 1 31.34 ? C4B FAD 901 A 1 
HETATM 7 O O4B FAD . . . D 4 187.45 72.139 27.42 1 30.44 ? O4B FAD 901 A 1 
HETATM 8 C C3B FAD . . . D 4 188.71 71.346 29.155 1 28.25 ? C3B FAD 901 A 1 
HETATM 9 O O3B FAD . . . D 4 190.011 71.713 29.236 1 31.41 ? O3B FAD 901 A 1 
HETATM 10 C C2B FAD . . . D 4 187.802 72.483 29.68 1 26.84 ? C2B FAD 901 A 1 
HETATM 11 O O2B FAD . . . D 4 188.528 73.246 30.768 1 28.11 ? O2B FAD 901 A 1 
HETATM 12 C C1B FAD . . . D 4 187.623 73.211 28.622 1 31.28 ? C1B FAD 901 A 1 
HETATM 13 N N9A FAD . . . D 4 186.438 74.039 28.686 1 27.86 ? N9A FAD 901 A 1 
HETATM 14 C C8A FAD . . . D 4 185.295 73.766 29.314 1 30.08 ? C8A FAD 901 A 1 
HETATM 15 N N7A FAD . . . D 4 184.464 74.79 29.119 1 26 ? N7A FAD 901 A 1 
HETATM 16 C C5A FAD . . . D 4 185.111 75.707 28.351 1 28.77 ? C5A FAD 901 A 1 
HETATM 17 C C6A FAD . . . D 4 184.719 76.941 27.852 1 27.51 ? C6A FAD 901 A 1 
HETATM 18 N N6A FAD . . . D 4 183.488 77.709 27.966 1 30.14 ? N6A FAD 901 A 1 
HETATM 19 N N1A FAD . . . D 4 185.552 77.642 27.12 1 23.33 ? N1A FAD 901 A 1 
HETATM 20 C C2A FAD . . . D 4 186.796 77.164 26.851 1 25.45 ? C2A FAD 901 A 1 
HETATM 21 N N3A FAD . . . D 4 187.176 75.968 27.335 1 27.16 ? N3A FAD 901 A 1 
HETATM 22 C C4A FAD . . . D 4 186.316 75.247 28.086 1 26.21 ? C4A FAD 901 A 1 
HETATM 23 N N1 FAD . . . D 4 189.38 57.697 31.727 1 41.15 ? N1 FAD 901 A 1 
HETATM 24 C C2 FAD . . . D 4 190.149 56.435 31.603 1 43.71 ? C2 FAD 901 A 1 
HETATM 25 O O2 FAD . . . D 4 190.311 55.941 30.529 1 51 ? O2 FAD 901 A 1 
HETATM 26 N N3 FAD . . . D 4 190.712 55.786 32.831 1 64.11 ? N3 FAD 901 A 1 
HETATM 27 C C4 FAD . . . D 4 190.502 56.404 34.128 1 33.27 ? C4 FAD 901 A 1 
HETATM 28 O O4 FAD . . . D 4 190.961 55.887 35.167 1 47.5 ? O4 FAD 901 A 1 
HETATM 29 C C4X FAD . . . D 4 189.714 57.684 34.231 1 35.13 ? C4X FAD 901 A 1 
HETATM 30 N N5 FAD . . . D 4 189.503 58.302 35.564 1 41.16 ? N5 FAD 901 A 1 
HETATM 31 C C5X FAD . . . D 4 188.734 59.582 35.679 1 43.32 ? C5X FAD 901 A 1 
HETATM 32 C C6 FAD . . . D 4 188.545 60.158 36.929 1 47.16 ? C6 FAD 901 A 1 
HETATM 33 C C7 FAD . . . D 4 187.815 61.363 37.045 1 45.07 ? C7 FAD 901 A 1 
HETATM 34 C C7M FAD . . . D 4 187.708 61.845 38.487 1 46.06 ? C7M FAD 901 A 1 
HETATM 35 C C8 FAD . . . D 4 187.289 61.973 35.906 1 52.79 ? C8 FAD 901 A 1 
HETATM 36 C C8M FAD . . . D 4 186.491 63.27 35.882 1 43.03 ? C8M FAD 901 A 1 
HETATM 37 C C9 FAD . . . D 4 187.481 61.391 34.632 1 51.14 ? C9 FAD 901 A 1 
HETATM 38 C C9A FAD . . . D 4 188.196 60.199 34.511 1 47.79 ? C9A FAD 901 A 1 
HETATM 39 N N10 FAD . . . D 4 188.417 59.564 33.142 1 40.84 ? N10 FAD 901 A 1 
HETATM 40 C C10 FAD . . . D 4 189.173 58.311 33.032 1 41.38 ? C10 FAD 901 A 1 
HETATM 41 C C1' FAD . . . D 4 187.848 60.179 31.897 1 39.62 ? C1' FAD 901 A 1 
HETATM 42 C C2' FAD . . . D 4 188.879 61.048 31.139 1 35.11 ? C2' FAD 901 A 1 
HETATM 43 O O2' FAD . . . D 4 189.581 61.82 32.03 1 51.86 ? O2' FAD 901 A 1 
HETATM 44 C C3' FAD . . . D 4 188.091 61.938 30.212 1 37.24 ? C3' FAD 901 A 1 
HETATM 45 O O3' FAD . . . D 4 187.113 61.17 29.527 1 31.23 ? O3' FAD 901 A 1 
HETATM 46 C C4' FAD . . . D 4 188.977 62.582 29.194 1 33.07 ? C4' FAD 901 A 1 
HETATM 47 O O4' FAD . . . D 4 190.122 63.174 29.818 1 34.03 ? O4' FAD 901 A 1 
HETATM 48 C C5' FAD . . . D 4 188.126 63.652 28.533 1 34.99 ? C5' FAD 901 A 1 
HETATM 49 O O5' FAD . . . D 4 188.778 64.196 27.41 1 37.83 ? O5' FAD 901 A 1 
HETATM 50 P P FAD . . . D 4 187.902 65.379 26.636 1 23.23 ? P FAD 901 A 1 
HETATM 51 O O1P FAD . . . D 4 188.85 66.169 25.711 1 32.28 ? O1P FAD 901 A 1 
HETATM 52 O O2P FAD . . . D 4 186.78 64.761 25.858 1 23.52 ? O2P FAD 901 A 1 
HETATM 53 O O3P FAD . . . D 4 187.251 66.319 27.791 1 29.87 ? O3P FAD 901 A 1 
HETATM 54 H H51A FAD . . . D 4 186.851 69.725 28.258 1 35.29 ? H51A FAD 901 A 1 
HETATM 55 H H52A FAD . . . D 4 187.061 69.768 26.685 1 35.29 ? H52A FAD 901 A 1 
HETATM 56 H H4B FAD . . . D 4 189.042 71.191 27.099 1 37.61 ? H4B FAD 901 A 1 
HETATM 57 H H3B FAD . . . D 4 188.557 70.53 29.656 1 33.9 ? H3B FAD 901 A 1 
HETATM 58 H HO3A FAD . . . D 4 190.505 71.034 29.102 1 37.7 ? HO3A FAD 901 A 1 
HETATM 59 H H2B FAD . . . D 4 186.958 72.133 30.007 1 32.21 ? H2B FAD 901 A 1 
HETATM 60 H HO2A FAD . . . D 4 189.367 73.166 30.659 1 33.73 ? HO2A FAD 901 A 1 
HETATM 61 H H1B FAD . . . D 4 188.406 73.761 28.463 1 37.54 ? H1B FAD 901 A 1 
HETATM 62 H H8A FAD . . . D 4 185.112 72.999 29.807 1 36.09 ? H8A FAD 901 A 1 
HETATM 63 H H61A FAD . . . D 4 183.261 78.048 28.723 1 36.17 ? H61A FAD 901 A 1 
HETATM 64 H H62A FAD . . . D 4 182.988 77.825 27.276 1 36.17 ? H62A FAD 901 A 1 
HETATM 65 H H2A FAD . . . D 4 187.384 77.663 26.333 1 30.53 ? H2A FAD 901 A 1 
HETATM 66 H HN3 FAD . . . D 4 191.156 55.052 32.769 1 76.94 ? HN3 FAD 901 A 1 
HETATM 67 H H6 FAD . . . D 4 188.898 59.752 37.688 1 56.59 ? H6 FAD 901 A 1 
HETATM 68 H HM71 FAD . . . D 4 188.573 62.165 38.787 1 55.27 ? HM71 FAD 901 A 1 
HETATM 69 H HM72 FAD . . . D 4 187.051 62.555 38.548 1 55.27 ? HM72 FAD 901 A 1 
HETATM 70 H HM73 FAD . . . D 4 187.431 61.104 39.049 1 55.27 ? HM73 FAD 901 A 1 
HETATM 71 H HM81 FAD . . . D 4 186.014 63.338 35.04 1 51.64 ? HM81 FAD 901 A 1 
HETATM 72 H HM82 FAD . . . D 4 185.857 63.271 36.615 1 51.64 ? HM82 FAD 901 A 1 
HETATM 73 H HM83 FAD . . . D 4 187.094 64.024 35.974 1 51.64 ? HM83 FAD 901 A 1 
HETATM 74 H H9 FAD . . . D 4 187.125 61.799 33.876 1 61.36 ? H9 FAD 901 A 1 
HETATM 75 H "H1'1" FAD . . . D 4 187.525 59.475 31.312 1 47.55 ? "H1'1" FAD 901 A 1 
HETATM 76 H "H1'2" FAD . . . D 4 187.102 60.745 32.147 1 47.55 ? "H1'2" FAD 901 A 1 
HETATM 77 H H2' FAD . . . D 4 189.485 60.485 30.632 1 42.13 ? H2' FAD 901 A 1 
HETATM 78 H HO2' FAD . . . D 4 190.178 62.259 31.613 1 62.23 ? HO2' FAD 901 A 1 
HETATM 79 H H3' FAD . . . D 4 187.649 62.627 30.731 1 44.68 ? H3' FAD 901 A 1 
HETATM 80 H HO3' FAD . . . D 4 187.499 60.593 29.036 1 37.47 ? HO3' FAD 901 A 1 
HETATM 81 H H4' FAD . . . D 4 189.257 61.926 28.536 1 39.68 ? H4' FAD 901 A 1 
HETATM 82 H HO4' FAD . . . D 4 190.544 63.647 29.251 1 40.84 ? HO4' FAD 901 A 1 
HETATM 83 H "H5'1" FAD . . . D 4 187.952 64.362 29.17 1 41.99 ? "H5'1" FAD 901 A 1 
HETATM 84 H "H5'2" FAD . . . D 4 187.279 63.27 28.255 1 41.99 ? "H5'2" FAD 901 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    39 
_model_server_stats.query_time_ms           245 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           84 
#