data_4XBO
#
_model_server_result.job_id            75jWOJQMamrYVPmnElOarg 
_model_server_result.datetime_utc      '2024-12-26 19:55:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xbo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    4XBO 
#
_exptl.entry_id    4XBO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4XBO 
_cell.length_a            113.863 
_cell.length_b            136.571 
_cell.length_c            99.612 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XBO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 277 n n 
N HN1 SAH sing 278 n n 
N HN2 SAH sing 279 n n 
CA CB SAH sing 280 n n 
CA C SAH sing 281 n n 
CA HA SAH sing 282 n n 
CB CG SAH sing 283 n n 
CB HB1 SAH sing 284 n n 
CB HB2 SAH sing 285 n n 
CG SD SAH sing 286 n n 
CG HG1 SAH sing 287 n n 
CG HG2 SAH sing 288 n n 
SD C5' SAH sing 289 n n 
C O SAH doub 290 n n 
C OXT SAH sing 291 n n 
OXT HXT SAH sing 292 n n 
C5' C4' SAH sing 293 n n 
C5' "H5'1" SAH sing 294 n n 
C5' "H5'2" SAH sing 295 n n 
C4' O4' SAH sing 296 n n 
C4' C3' SAH sing 297 n n 
C4' H4' SAH sing 298 n n 
O4' C1' SAH sing 299 n n 
C3' O3' SAH sing 300 n n 
C3' C2' SAH sing 301 n n 
C3' H3' SAH sing 302 n n 
O3' HO3' SAH sing 303 n n 
C2' O2' SAH sing 304 n n 
C2' C1' SAH sing 305 n n 
C2' H2' SAH sing 306 n n 
O2' HO2' SAH sing 307 n n 
C1' N9 SAH sing 308 n n 
C1' H1' SAH sing 309 n n 
N9 C8 SAH sing 310 n y 
N9 C4 SAH sing 311 n y 
C8 N7 SAH doub 312 n y 
C8 H8 SAH sing 313 n n 
N7 C5 SAH sing 314 n y 
C5 C6 SAH sing 315 n y 
C5 C4 SAH doub 316 n y 
C6 N6 SAH sing 317 n n 
C6 N1 SAH doub 318 n y 
N6 HN61 SAH sing 319 n n 
N6 HN62 SAH sing 320 n n 
N1 C2 SAH sing 321 n y 
C2 N3 SAH doub 322 n y 
C2 H2 SAH sing 323 n n 
N3 C4 SAH sing 324 n y 
#
_atom_sites.entry_id                     4XBO 
_atom_sites.fract_transf_matrix[1][1]    0.008782 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007322 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010039 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SAH A 1 301 1 SAH SAH . 
D 2 SAH B 1 301 1 SAH SAH . 
E 3 HOH A 1 401 47 HOH HOH . 
E 3 HOH A 2 402 63 HOH HOH . 
E 3 HOH A 3 403 50 HOH HOH . 
E 3 HOH A 4 404 81 HOH HOH . 
E 3 HOH A 5 405 80 HOH HOH . 
E 3 HOH A 6 406 87 HOH HOH . 
E 3 HOH A 7 407 88 HOH HOH . 
E 3 HOH A 8 408 40 HOH HOH . 
E 3 HOH A 9 409 93 HOH HOH . 
E 3 HOH A 10 410 1 HOH HOH . 
E 3 HOH A 11 411 4 HOH HOH . 
E 3 HOH A 12 412 5 HOH HOH . 
E 3 HOH A 13 413 6 HOH HOH . 
E 3 HOH A 14 414 7 HOH HOH . 
E 3 HOH A 15 415 11 HOH HOH . 
E 3 HOH A 16 416 12 HOH HOH . 
E 3 HOH A 17 417 15 HOH HOH . 
E 3 HOH A 18 418 17 HOH HOH . 
E 3 HOH A 19 419 22 HOH HOH . 
E 3 HOH A 20 420 23 HOH HOH . 
E 3 HOH A 21 421 24 HOH HOH . 
E 3 HOH A 22 422 26 HOH HOH . 
E 3 HOH A 23 423 35 HOH HOH . 
E 3 HOH A 24 424 36 HOH HOH . 
E 3 HOH A 25 425 38 HOH HOH . 
E 3 HOH A 26 426 43 HOH HOH . 
E 3 HOH A 27 427 44 HOH HOH . 
E 3 HOH A 28 428 52 HOH HOH . 
E 3 HOH A 29 429 59 HOH HOH . 
E 3 HOH A 30 430 60 HOH HOH . 
E 3 HOH A 31 431 62 HOH HOH . 
E 3 HOH A 32 432 64 HOH HOH . 
E 3 HOH A 33 433 67 HOH HOH . 
E 3 HOH A 34 434 69 HOH HOH . 
E 3 HOH A 35 435 72 HOH HOH . 
E 3 HOH A 36 436 74 HOH HOH . 
E 3 HOH A 37 437 75 HOH HOH . 
E 3 HOH A 38 438 76 HOH HOH . 
E 3 HOH A 39 439 77 HOH HOH . 
E 3 HOH A 40 440 82 HOH HOH . 
E 3 HOH A 41 441 84 HOH HOH . 
E 3 HOH A 42 442 86 HOH HOH . 
E 3 HOH A 43 443 90 HOH HOH . 
E 3 HOH A 44 444 95 HOH HOH . 
E 3 HOH A 45 445 98 HOH HOH . 
F 3 HOH B 1 401 56 HOH HOH . 
F 3 HOH B 2 402 83 HOH HOH . 
F 3 HOH B 3 403 20 HOH HOH . 
F 3 HOH B 4 404 32 HOH HOH . 
F 3 HOH B 5 405 48 HOH HOH . 
F 3 HOH B 6 406 78 HOH HOH . 
F 3 HOH B 7 407 53 HOH HOH . 
F 3 HOH B 8 408 71 HOH HOH . 
F 3 HOH B 9 409 91 HOH HOH . 
F 3 HOH B 10 410 58 HOH HOH . 
F 3 HOH B 11 411 79 HOH HOH . 
F 3 HOH B 12 412 2 HOH HOH . 
F 3 HOH B 13 413 3 HOH HOH . 
F 3 HOH B 14 414 8 HOH HOH . 
F 3 HOH B 15 415 9 HOH HOH . 
F 3 HOH B 16 416 10 HOH HOH . 
F 3 HOH B 17 417 13 HOH HOH . 
F 3 HOH B 18 418 14 HOH HOH . 
F 3 HOH B 19 419 16 HOH HOH . 
F 3 HOH B 20 420 18 HOH HOH . 
F 3 HOH B 21 421 19 HOH HOH . 
F 3 HOH B 22 422 21 HOH HOH . 
F 3 HOH B 23 423 25 HOH HOH . 
F 3 HOH B 24 424 27 HOH HOH . 
F 3 HOH B 25 425 28 HOH HOH . 
F 3 HOH B 26 426 29 HOH HOH . 
F 3 HOH B 27 427 30 HOH HOH . 
F 3 HOH B 28 428 31 HOH HOH . 
F 3 HOH B 29 429 33 HOH HOH . 
F 3 HOH B 30 430 34 HOH HOH . 
F 3 HOH B 31 431 37 HOH HOH . 
F 3 HOH B 32 432 39 HOH HOH . 
F 3 HOH B 33 433 41 HOH HOH . 
F 3 HOH B 34 434 42 HOH HOH . 
F 3 HOH B 35 435 45 HOH HOH . 
F 3 HOH B 36 436 46 HOH HOH . 
F 3 HOH B 37 437 49 HOH HOH . 
F 3 HOH B 38 438 51 HOH HOH . 
F 3 HOH B 39 439 54 HOH HOH . 
F 3 HOH B 40 440 55 HOH HOH . 
F 3 HOH B 41 441 57 HOH HOH . 
F 3 HOH B 42 442 61 HOH HOH . 
F 3 HOH B 43 443 65 HOH HOH . 
F 3 HOH B 44 444 66 HOH HOH . 
F 3 HOH B 45 445 68 HOH HOH . 
F 3 HOH B 46 446 70 HOH HOH . 
F 3 HOH B 47 447 73 HOH HOH . 
F 3 HOH B 48 448 85 HOH HOH . 
F 3 HOH B 49 449 89 HOH HOH . 
F 3 HOH B 50 450 92 HOH HOH . 
F 3 HOH B 51 451 94 HOH HOH . 
F 3 HOH B 52 452 96 HOH HOH . 
F 3 HOH B 53 453 97 HOH HOH . 
F 3 HOH B 54 454 99 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . C 2 -35.16 -24.42 -0.668 1 60.78 ? N SAH 301 A 1 
HETATM 2 C CA SAH . . . C 2 -34.931 -25.003 -1.982 1 59.05 ? CA SAH 301 A 1 
HETATM 3 C CB SAH . . . C 2 -34.358 -23.884 -2.866 1 52.17 ? CB SAH 301 A 1 
HETATM 4 C CG SAH . . . C 2 -34.773 -23.951 -4.329 1 50.04 ? CG SAH 301 A 1 
HETATM 5 S SD SAH . . . C 2 -33.374 -23.73 -5.452 1 50.11 ? SD SAH 301 A 1 
HETATM 6 C C SAH . . . C 2 -34.109 -26.326 -1.916 1 55.42 ? C SAH 301 A 1 
HETATM 7 O O SAH . . . C 2 -32.876 -26.392 -1.971 1 53.42 ? O SAH 301 A 1 
HETATM 8 O OXT SAH . . . C 2 -34.667 -27.415 -1.823 1 53.28 ? OXT SAH 301 A 1 
HETATM 9 C C5' SAH . . . C 2 -33.994 -24.812 -6.756 1 42.1 ? C5' SAH 301 A 1 
HETATM 10 C C4' SAH . . . C 2 -33.234 -26.119 -6.86 1 42.92 ? C4' SAH 301 A 1 
HETATM 11 O O4' SAH . . . C 2 -31.818 -25.902 -6.87 1 44.69 ? O4' SAH 301 A 1 
HETATM 12 C C3' SAH . . . C 2 -33.489 -27.028 -5.671 1 42.72 ? C3' SAH 301 A 1 
HETATM 13 O O3' SAH . . . C 2 -34.59 -27.859 -5.895 1 46.44 ? O3' SAH 301 A 1 
HETATM 14 C C2' SAH . . . C 2 -32.21 -27.837 -5.577 1 41.6 ? C2' SAH 301 A 1 
HETATM 15 O O2' SAH . . . C 2 -32.239 -28.908 -6.484 1 37.35 ? O2' SAH 301 A 1 
HETATM 16 C C1' SAH . . . C 2 -31.158 -26.9 -6.111 1 39.83 ? C1' SAH 301 A 1 
HETATM 17 N N9 SAH . . . C 2 -30.344 -26.349 -5.007 1 40.98 ? N9 SAH 301 A 1 
HETATM 18 C C8 SAH . . . C 2 -30.207 -25.054 -4.627 1 39.47 ? C8 SAH 301 A 1 
HETATM 19 N N7 SAH . . . C 2 -29.34 -25.012 -3.594 1 40.42 ? N7 SAH 301 A 1 
HETATM 20 C C5 SAH . . . C 2 -28.91 -26.257 -3.277 1 38.74 ? C5 SAH 301 A 1 
HETATM 21 C C6 SAH . . . C 2 -28.035 -26.769 -2.308 1 42.31 ? C6 SAH 301 A 1 
HETATM 22 N N6 SAH . . . C 2 -27.398 -25.993 -1.412 1 41.43 ? N6 SAH 301 A 1 
HETATM 23 N N1 SAH . . . C 2 -27.832 -28.128 -2.303 1 41.45 ? N1 SAH 301 A 1 
HETATM 24 C C2 SAH . . . C 2 -28.457 -28.966 -3.197 1 37.7 ? C2 SAH 301 A 1 
HETATM 25 N N3 SAH . . . C 2 -29.314 -28.46 -4.139 1 37.44 ? N3 SAH 301 A 1 
HETATM 26 C C4 SAH . . . C 2 -29.539 -27.114 -4.18 1 39.49 ? C4 SAH 301 A 1 
#
_model_server_stats.io_time_ms              54 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           26 
#