data_4XBP
#
_model_server_result.job_id            kVrjt3DVwic4RhZY8kpRlQ 
_model_server_result.datetime_utc      '2024-11-14 09:58:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xbp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":301}' 
#
_entry.id    4XBP 
#
_exptl.entry_id    4XBP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.41 
_cell.angle_gamma         90 
_cell.entry_id            4XBP 
_cell.length_a            53.426 
_cell.length_b            111.744 
_cell.length_c            146.196 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XBP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,J,K 1 1 
C,D,L,M 2 1 
E,F,N,O 3 1 
G,H,I,P,Q 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             I 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 89 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 135 L CYS 134 1_555 A SG CYS 195 L CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 A SG CYS 135 L CYS 134 1_555 A SG CYS 195 L CYS 194 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf6 B SG CYS 154 H CYS 142 1_555 B SG CYS 210 H CYS 208 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf7 B SG CYS 154 H CYS 142 1_555 B SG CYS 210 H CYS 208 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf8 C SG CYS 23 B CYS 23 1_555 C SG CYS 89 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf9 C SG CYS 135 B CYS 134 1_555 C SG CYS 195 B CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf10 C SG CYS 135 B CYS 134 1_555 C SG CYS 195 B CYS 194 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf11 D SG CYS 22 A CYS 22 1_555 D SG CYS 96 A CYS 92 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf12 D SG CYS 22 A CYS 22 1_555 D SG CYS 96 A CYS 92 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf13 D SG CYS 154 A CYS 142 1_555 D SG CYS 210 A CYS 208 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf14 D SG CYS 154 A CYS 142 1_555 D SG CYS 210 A CYS 208 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf15 E SG CYS 23 D CYS 23 1_555 E SG CYS 89 D CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf16 E SG CYS 135 D CYS 134 1_555 E SG CYS 195 D CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf17 E SG CYS 135 D CYS 134 1_555 E SG CYS 195 D CYS 194 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf18 F SG CYS 22 C CYS 22 1_555 F SG CYS 96 C CYS 92 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf19 F SG CYS 22 C CYS 22 1_555 F SG CYS 96 C CYS 92 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf20 F SG CYS 154 C CYS 142 1_555 F SG CYS 210 C CYS 208 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf21 F SG CYS 154 C CYS 142 1_555 F SG CYS 210 C CYS 208 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf22 G SG CYS 23 F CYS 23 1_555 G SG CYS 89 F CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf23 G SG CYS 135 F CYS 134 1_555 G SG CYS 195 F CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf24 G SG CYS 135 F CYS 134 1_555 G SG CYS 195 F CYS 194 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf25 H SG CYS 22 E CYS 22 1_555 H SG CYS 96 E CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf26 H SG CYS 154 E CYS 142 1_555 H SG CYS 210 E CYS 208 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf27 H SG CYS 154 E CYS 142 1_555 H SG CYS 210 E CYS 208 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.037 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4XBP 
_atom_sites.fract_transf_matrix[1][1]    0.018717 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001114 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008949 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006852 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 GOL F 1 301 4004 GOL GOL . 
J 4 HOH L 1 301 3 HOH HOH . 
J 4 HOH L 2 302 1 HOH HOH . 
J 4 HOH L 3 303 4 HOH HOH . 
J 4 HOH L 4 304 10 HOH HOH . 
J 4 HOH L 5 305 2 HOH HOH . 
J 4 HOH L 6 306 5 HOH HOH . 
J 4 HOH L 7 307 7 HOH HOH . 
J 4 HOH L 8 308 9 HOH HOH . 
J 4 HOH L 9 309 11 HOH HOH . 
J 4 HOH L 10 310 12 HOH HOH . 
J 4 HOH L 11 311 14 HOH HOH . 
J 4 HOH L 12 312 15 HOH HOH . 
J 4 HOH L 13 313 16 HOH HOH . 
K 4 HOH H 1 301 27 HOH HOH . 
K 4 HOH H 2 302 23 HOH HOH . 
K 4 HOH H 3 303 6 HOH HOH . 
K 4 HOH H 4 304 8 HOH HOH . 
K 4 HOH H 5 305 13 HOH HOH . 
K 4 HOH H 6 306 17 HOH HOH . 
K 4 HOH H 7 307 18 HOH HOH . 
K 4 HOH H 8 308 19 HOH HOH . 
K 4 HOH H 9 309 20 HOH HOH . 
K 4 HOH H 10 310 21 HOH HOH . 
K 4 HOH H 11 311 22 HOH HOH . 
K 4 HOH H 12 312 24 HOH HOH . 
K 4 HOH H 13 313 25 HOH HOH . 
K 4 HOH H 14 314 26 HOH HOH . 
K 4 HOH H 15 315 28 HOH HOH . 
K 4 HOH H 16 316 30 HOH HOH . 
L 4 HOH B 1 301 45 HOH HOH . 
L 4 HOH B 2 302 31 HOH HOH . 
L 4 HOH B 3 303 32 HOH HOH . 
L 4 HOH B 4 304 33 HOH HOH . 
L 4 HOH B 5 305 34 HOH HOH . 
L 4 HOH B 6 306 36 HOH HOH . 
L 4 HOH B 7 307 37 HOH HOH . 
L 4 HOH B 8 308 38 HOH HOH . 
L 4 HOH B 9 309 39 HOH HOH . 
L 4 HOH B 10 310 40 HOH HOH . 
L 4 HOH B 11 311 41 HOH HOH . 
L 4 HOH B 12 312 42 HOH HOH . 
L 4 HOH B 13 313 43 HOH HOH . 
L 4 HOH B 14 314 44 HOH HOH . 
L 4 HOH B 15 315 46 HOH HOH . 
L 4 HOH B 16 316 93 HOH HOH . 
M 4 HOH A 1 301 59 HOH HOH . 
M 4 HOH A 2 302 35 HOH HOH . 
M 4 HOH A 3 303 47 HOH HOH . 
M 4 HOH A 4 304 48 HOH HOH . 
M 4 HOH A 5 305 49 HOH HOH . 
M 4 HOH A 6 306 50 HOH HOH . 
M 4 HOH A 7 307 51 HOH HOH . 
M 4 HOH A 8 308 52 HOH HOH . 
M 4 HOH A 9 309 53 HOH HOH . 
M 4 HOH A 10 310 54 HOH HOH . 
M 4 HOH A 11 311 55 HOH HOH . 
M 4 HOH A 12 312 56 HOH HOH . 
M 4 HOH A 13 313 57 HOH HOH . 
M 4 HOH A 14 314 58 HOH HOH . 
M 4 HOH A 15 315 60 HOH HOH . 
M 4 HOH A 16 316 92 HOH HOH . 
N 4 HOH D 1 301 67 HOH HOH . 
N 4 HOH D 2 302 98 HOH HOH . 
N 4 HOH D 3 303 29 HOH HOH . 
N 4 HOH D 4 304 61 HOH HOH . 
N 4 HOH D 5 305 63 HOH HOH . 
N 4 HOH D 6 306 64 HOH HOH . 
N 4 HOH D 7 307 65 HOH HOH . 
N 4 HOH D 8 308 66 HOH HOH . 
N 4 HOH D 9 309 69 HOH HOH . 
N 4 HOH D 10 310 70 HOH HOH . 
N 4 HOH D 11 311 71 HOH HOH . 
N 4 HOH D 12 312 77 HOH HOH . 
N 4 HOH D 13 313 94 HOH HOH . 
O 4 HOH C 1 301 62 HOH HOH . 
O 4 HOH C 2 302 68 HOH HOH . 
O 4 HOH C 3 303 72 HOH HOH . 
O 4 HOH C 4 304 73 HOH HOH . 
O 4 HOH C 5 305 74 HOH HOH . 
O 4 HOH C 6 306 75 HOH HOH . 
O 4 HOH C 7 307 76 HOH HOH . 
O 4 HOH C 8 308 91 HOH HOH . 
O 4 HOH C 9 309 95 HOH HOH . 
O 4 HOH C 10 310 96 HOH HOH . 
O 4 HOH C 11 311 97 HOH HOH . 
P 4 HOH F 1 401 99 HOH HOH . 
P 4 HOH F 2 402 78 HOH HOH . 
P 4 HOH F 3 403 79 HOH HOH . 
P 4 HOH F 4 404 80 HOH HOH . 
P 4 HOH F 5 405 81 HOH HOH . 
P 4 HOH F 6 406 82 HOH HOH . 
P 4 HOH F 7 407 83 HOH HOH . 
P 4 HOH F 8 408 84 HOH HOH . 
P 4 HOH F 9 409 85 HOH HOH . 
P 4 HOH F 10 410 86 HOH HOH . 
P 4 HOH F 11 411 87 HOH HOH . 
P 4 HOH F 12 412 100 HOH HOH . 
Q 4 HOH E 1 301 88 HOH HOH . 
Q 4 HOH E 2 302 89 HOH HOH . 
Q 4 HOH E 3 303 90 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 3 -7.883 -34.678 -67.554 1 49.39 ? C1 GOL 301 F 1 
HETATM 2 O O1 GOL . . . I 3 -8.539 -34.126 -66.434 1 46.35 ? O1 GOL 301 F 1 
HETATM 3 C C2 GOL . . . I 3 -8.487 -34.121 -68.838 1 52.39 ? C2 GOL 301 F 1 
HETATM 4 O O2 GOL . . . I 3 -9.693 -34.788 -69.128 1 52.67 ? O2 GOL 301 F 1 
HETATM 5 C C3 GOL . . . I 3 -7.514 -34.34 -69.989 1 52.21 ? C3 GOL 301 F 1 
HETATM 6 O O3 GOL . . . I 3 -7.366 -35.725 -70.212 1 42.6 ? O3 GOL 301 F 1 
#
_model_server_stats.io_time_ms              73 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    46 
_model_server_stats.query_time_ms           224 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           6 
#