data_4XC7
#
_model_server_result.job_id            14-PVVuPDsdhv43XQ8QkTg 
_model_server_result.datetime_utc      '2024-11-28 06:12:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xc7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1101}' 
#
_entry.id    4XC7 
#
_exptl.entry_id    4XC7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              837.624 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'Butyryl Coenzyme A' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4XC7 
_cell.length_a            318.18 
_cell.length_b            318.18 
_cell.length_c            344.71 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XC7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C25 H42 N7 O17 P3 S' 
_chem_comp.formula_weight    837.624 
_chem_comp.id                BCO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'Butyryl Coenzyme A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'S-{(3S,5S,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} butanethioate (non-preferred name)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C15 N4 BCO doub 70 n y 
C15 N3 BCO sing 71 n y 
N4 C12 BCO sing 72 n y 
N3 C6 BCO doub 73 n y 
O9 P1 BCO doub 74 n n 
C12 N5 BCO sing 75 n n 
C12 C8 BCO doub 76 n y 
O3 C2 BCO sing 77 n n 
C6 C8 BCO sing 78 n y 
C6 N1 BCO sing 79 n y 
C2 C4 BCO sing 80 n n 
C2 C1 BCO sing 81 n n 
C8 N2 BCO sing 82 n y 
P1 O6 BCO sing 83 n n 
P1 O5 BCO sing 84 n n 
P1 O2 BCO sing 85 n n 
C4 N1 BCO sing 86 n n 
C4 O1 BCO sing 87 n n 
N1 C7 BCO sing 88 n y 
O2 C1 BCO sing 89 n n 
C1 C3 BCO sing 90 n n 
N2 C7 BCO doub 91 n y 
O1 C3 BCO sing 92 n n 
C3 C5 BCO sing 93 n n 
C5 O4 BCO sing 94 n n 
O4 P2 BCO sing 95 n n 
O10 P2 BCO doub 96 n n 
P2 O7 BCO sing 97 n n 
P2 O12 BCO sing 98 n n 
O7 P3 BCO sing 99 n n 
P3 O13 BCO doub 100 n n 
P3 O14 BCO sing 101 n n 
P3 O8 BCO sing 102 n n 
O8 C11 BCO sing 103 n n 
C14 C9 BCO sing 104 n n 
C11 C9 BCO sing 105 n n 
C9 C13 BCO sing 106 n n 
C9 C10 BCO sing 107 n n 
C10 O11 BCO sing 108 n n 
C10 C16 BCO sing 109 n n 
C16 O15 BCO doub 110 n n 
C16 N6 BCO sing 111 n n 
N6 C17 BCO sing 112 n n 
C17 C18 BCO sing 113 n n 
C18 C19 BCO sing 114 n n 
C19 O16 BCO doub 115 n n 
C19 N7 BCO sing 116 n n 
N7 C20 BCO sing 117 n n 
C20 C21 BCO sing 118 n n 
C21 S1 BCO sing 119 n n 
S1 C22 BCO sing 120 n n 
C22 O17 BCO doub 121 n n 
C22 C23 BCO sing 122 n n 
C23 C24 BCO sing 123 n n 
C24 C25 BCO sing 124 n n 
O5 H1 BCO sing 125 n n 
O6 H2 BCO sing 126 n n 
C1 H3 BCO sing 127 n n 
C2 H4 BCO sing 128 n n 
O3 H5 BCO sing 129 n n 
C4 H6 BCO sing 130 n n 
C7 H7 BCO sing 131 n n 
C15 H8 BCO sing 132 n n 
N5 H9 BCO sing 133 n n 
N5 H10 BCO sing 134 n n 
C3 H11 BCO sing 135 n n 
C5 H12 BCO sing 136 n n 
C5 H13 BCO sing 137 n n 
O12 H14 BCO sing 138 n n 
O14 H15 BCO sing 139 n n 
C11 H16 BCO sing 140 n n 
C11 H17 BCO sing 141 n n 
C13 H18 BCO sing 142 n n 
C13 H19 BCO sing 143 n n 
C13 H20 BCO sing 144 n n 
C14 H21 BCO sing 145 n n 
C14 H22 BCO sing 146 n n 
C14 H23 BCO sing 147 n n 
C10 H24 BCO sing 148 n n 
O11 H25 BCO sing 149 n n 
N6 H26 BCO sing 150 n n 
C17 H27 BCO sing 151 n n 
C18 H28 BCO sing 152 n n 
N7 H29 BCO sing 153 n n 
C20 H30 BCO sing 154 n n 
C20 H31 BCO sing 155 n n 
C21 H32 BCO sing 156 n n 
C21 H33 BCO sing 157 n n 
C23 H34 BCO sing 158 n n 
C24 H35 BCO sing 159 n n 
C25 H36 BCO sing 160 n n 
C25 H37 BCO sing 161 n n 
C25 H38 BCO sing 162 n n 
C17 H39 BCO sing 163 n n 
C18 H40 BCO sing 164 n n 
C23 H41 BCO sing 165 n n 
C24 H42 BCO sing 166 n n 
#
_atom_sites.entry_id                     4XC7 
_atom_sites.fract_transf_matrix[1][1]    0.003143 
_atom_sites.fract_transf_matrix[1][2]    0.001815 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003629 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002901 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 BCO A 1 1101 1211 BCO BCO . 
D 3 TLA A 1 1102 1 TLA TLA . 
E 2 BCO B 1 1101 1212 BCO BCO . 
F 3 TLA B 1 1102 2 TLA TLA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O9 BCO . . . C 2 -207.141 -102.791 -34.67 1 133.14 ? O9 BCO 1101 A 1 
HETATM 2 P P1 BCO . . . C 2 -207.236 -102.325 -33.227 1 136.05 ? P1 BCO 1101 A 1 
HETATM 3 O O5 BCO . . . C 2 -205.837 -102.132 -32.68 1 137.95 ? O5 BCO 1101 A 1 
HETATM 4 O O6 BCO . . . C 2 -207.968 -101.017 -33.163 1 135.15 ? O6 BCO 1101 A 1 
HETATM 5 O O2 BCO . . . C 2 -207.977 -103.395 -32.361 1 126.76 ? O2 BCO 1101 A 1 
HETATM 6 C C1 BCO . . . C 2 -209.378 -103.44 -32.263 1 122.54 ? C1 BCO 1101 A 1 
HETATM 7 C C2 BCO . . . C 2 -209.952 -103.795 -33.506 1 123.14 ? C2 BCO 1101 A 1 
HETATM 8 O O3 BCO . . . C 2 -209.052 -104.643 -34.237 1 124.11 ? O3 BCO 1101 A 1 
HETATM 9 C C4 BCO . . . C 2 -211.132 -104.545 -33.167 1 121.68 ? C4 BCO 1101 A 1 
HETATM 10 N N1 BCO . . . C 2 -212.364 -103.796 -33.036 1 120.52 ? N1 BCO 1101 A 1 
HETATM 11 C C7 BCO . . . C 2 -213.112 -103.699 -31.928 1 121.19 ? C7 BCO 1101 A 1 
HETATM 12 N N2 BCO . . . C 2 -214.181 -102.925 -32.186 1 120.67 ? N2 BCO 1101 A 1 
HETATM 13 C C8 BCO . . . C 2 -214.106 -102.531 -33.476 1 117.89 ? C8 BCO 1101 A 1 
HETATM 14 C C6 BCO . . . C 2 -212.951 -103.083 -34.026 1 117.37 ? C6 BCO 1101 A 1 
HETATM 15 N N3 BCO . . . C 2 -212.658 -102.828 -35.318 1 114.73 ? N3 BCO 1101 A 1 
HETATM 16 C C15 BCO . . . C 2 -213.457 -102.058 -36.068 1 112.95 ? C15 BCO 1101 A 1 
HETATM 17 N N4 BCO . . . C 2 -214.568 -101.521 -35.552 1 110.56 ? N4 BCO 1101 A 1 
HETATM 18 C C12 BCO . . . C 2 -214.93 -101.729 -34.275 1 114.97 ? C12 BCO 1101 A 1 
HETATM 19 N N5 BCO . . . C 2 -216.159 -101.125 -33.73 1 117.61 ? N5 BCO 1101 A 1 
HETATM 20 O O1 BCO . . . C 2 -210.882 -105.153 -31.934 1 119.47 ? O1 BCO 1101 A 1 
HETATM 21 C C3 BCO . . . C 2 -209.77 -104.537 -31.363 1 118.99 ? C3 BCO 1101 A 1 
HETATM 22 C C5 BCO . . . C 2 -210.143 -104.02 -30.024 1 114.82 ? C5 BCO 1101 A 1 
HETATM 23 O O4 BCO . . . C 2 -210.128 -102.623 -29.828 1 113.76 ? O4 BCO 1101 A 1 
HETATM 24 P P2 BCO . . . C 2 -210.493 -102.023 -28.394 1 109.53 ? P2 BCO 1101 A 1 
HETATM 25 O O12 BCO . . . C 2 -209.32 -102.29 -27.428 1 109.78 ? O12 BCO 1101 A 1 
HETATM 26 O O10 BCO . . . C 2 -210.716 -100.506 -28.531 1 108.68 ? O10 BCO 1101 A 1 
HETATM 27 O O7 BCO . . . C 2 -211.858 -102.708 -27.832 1 163.87 ? O7 BCO 1101 A 1 
HETATM 28 P P3 BCO . . . C 2 -212.128 -102.84 -26.295 1 141.5 ? P3 BCO 1101 A 1 
HETATM 29 O O14 BCO . . . C 2 -211.708 -104.189 -25.817 1 143.51 ? O14 BCO 1101 A 1 
HETATM 30 O O13 BCO . . . C 2 -213.601 -102.653 -26.03 1 140.18 ? O13 BCO 1101 A 1 
HETATM 31 O O8 BCO . . . C 2 -211.301 -101.736 -25.506 1 98.95 ? O8 BCO 1101 A 1 
HETATM 32 C C11 BCO . . . C 2 -211.966 -100.667 -24.861 1 103.03 ? C11 BCO 1101 A 1 
HETATM 33 C C9 BCO . . . C 2 -211.102 -99.634 -24.14 1 108.43 ? C9 BCO 1101 A 1 
HETATM 34 C C13 BCO . . . C 2 -211.966 -98.56 -23.516 1 110.12 ? C13 BCO 1101 A 1 
HETATM 35 C C14 BCO . . . C 2 -210.151 -98.959 -25.19 1 72.84 ? C14 BCO 1101 A 1 
HETATM 36 C C10 BCO . . . C 2 -210.263 -100.302 -23.104 1 110.77 ? C10 BCO 1101 A 1 
HETATM 37 O O11 BCO . . . C 2 -209.139 -99.472 -22.893 1 114.4 ? O11 BCO 1101 A 1 
HETATM 38 C C16 BCO . . . C 2 -210.956 -100.595 -21.783 1 107.33 ? C16 BCO 1101 A 1 
HETATM 39 O O15 BCO . . . C 2 -211.826 -101.473 -21.708 1 104.58 ? O15 BCO 1101 A 1 
HETATM 40 N N6 BCO . . . C 2 -210.584 -99.841 -20.588 1 106.51 ? N6 BCO 1101 A 1 
HETATM 41 C C17 BCO . . . C 2 -211.223 -100.128 -19.324 1 107.12 ? C17 BCO 1101 A 1 
HETATM 42 C C18 BCO . . . C 2 -212.611 -99.594 -19.039 1 106.64 ? C18 BCO 1101 A 1 
HETATM 43 C C19 BCO . . . C 2 -213.052 -99.547 -17.608 1 106.98 ? C19 BCO 1101 A 1 
HETATM 44 O O16 BCO . . . C 2 -214.24 -99.626 -17.331 1 108.26 ? O16 BCO 1101 A 1 
HETATM 45 N N7 BCO . . . C 2 -212.058 -99.412 -16.541 1 105 ? N7 BCO 1101 A 1 
HETATM 46 C C20 BCO . . . C 2 -212.47 -99.371 -15.165 1 102.26 ? C20 BCO 1101 A 1 
HETATM 47 C C21 BCO . . . C 2 -212.406 -98.034 -14.418 1 100.14 ? C21 BCO 1101 A 1 
HETATM 48 S S1 BCO . . . C 2 -213.68 -97.704 -13.182 1 137.28 ? S1 BCO 1101 A 1 
HETATM 49 C C22 BCO . . . C 2 -212.948 -96.868 -11.731 1 149.9 ? C22 BCO 1101 A 1 
HETATM 50 O O17 BCO . . . C 2 -211.7 -96.814 -11.603 1 151 ? O17 BCO 1101 A 1 
HETATM 51 C C23 BCO . . . C 2 -213.85 -96.105 -10.734 1 148.45 ? C23 BCO 1101 A 1 
HETATM 52 C C24 BCO . . . C 2 -213.428 -96.074 -9.29 1 146.79 ? C24 BCO 1101 A 1 
HETATM 53 C C25 BCO . . . C 2 -214.177 -95.146 -8.358 1 145.58 ? C25 BCO 1101 A 1 
#
_model_server_stats.io_time_ms              36 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           53 
#