data_4XC7 # _model_server_result.job_id qaWT5LXb-qnPZrc1BLzi5A _model_server_result.datetime_utc '2025-02-17 19:26:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xc7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1101}' # _entry.id 4XC7 # _exptl.entry_id 4XC7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 837.624 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Butyryl Coenzyme A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4XC7 _cell.length_a 318.18 _cell.length_b 318.18 _cell.length_c 344.71 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XC7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C25 H42 N7 O17 P3 S' _chem_comp.formula_weight 837.624 _chem_comp.id BCO _chem_comp.mon_nstd_flag . _chem_comp.name 'Butyryl Coenzyme A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'S-{(3S,5S,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} butanethioate (non-preferred name)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 N4 BCO doub 70 n y C15 N3 BCO sing 71 n y N4 C12 BCO sing 72 n y N3 C6 BCO doub 73 n y O9 P1 BCO doub 74 n n C12 N5 BCO sing 75 n n C12 C8 BCO doub 76 n y O3 C2 BCO sing 77 n n C6 C8 BCO sing 78 n y C6 N1 BCO sing 79 n y C2 C4 BCO sing 80 n n C2 C1 BCO sing 81 n n C8 N2 BCO sing 82 n y P1 O6 BCO sing 83 n n P1 O5 BCO sing 84 n n P1 O2 BCO sing 85 n n C4 N1 BCO sing 86 n n C4 O1 BCO sing 87 n n N1 C7 BCO sing 88 n y O2 C1 BCO sing 89 n n C1 C3 BCO sing 90 n n N2 C7 BCO doub 91 n y O1 C3 BCO sing 92 n n C3 C5 BCO sing 93 n n C5 O4 BCO sing 94 n n O4 P2 BCO sing 95 n n O10 P2 BCO doub 96 n n P2 O7 BCO sing 97 n n P2 O12 BCO sing 98 n n O7 P3 BCO sing 99 n n P3 O13 BCO doub 100 n n P3 O14 BCO sing 101 n n P3 O8 BCO sing 102 n n O8 C11 BCO sing 103 n n C14 C9 BCO sing 104 n n C11 C9 BCO sing 105 n n C9 C13 BCO sing 106 n n C9 C10 BCO sing 107 n n C10 O11 BCO sing 108 n n C10 C16 BCO sing 109 n n C16 O15 BCO doub 110 n n C16 N6 BCO sing 111 n n N6 C17 BCO sing 112 n n C17 C18 BCO sing 113 n n C18 C19 BCO sing 114 n n C19 O16 BCO doub 115 n n C19 N7 BCO sing 116 n n N7 C20 BCO sing 117 n n C20 C21 BCO sing 118 n n C21 S1 BCO sing 119 n n S1 C22 BCO sing 120 n n C22 O17 BCO doub 121 n n C22 C23 BCO sing 122 n n C23 C24 BCO sing 123 n n C24 C25 BCO sing 124 n n O5 H1 BCO sing 125 n n O6 H2 BCO sing 126 n n C1 H3 BCO sing 127 n n C2 H4 BCO sing 128 n n O3 H5 BCO sing 129 n n C4 H6 BCO sing 130 n n C7 H7 BCO sing 131 n n C15 H8 BCO sing 132 n n N5 H9 BCO sing 133 n n N5 H10 BCO sing 134 n n C3 H11 BCO sing 135 n n C5 H12 BCO sing 136 n n C5 H13 BCO sing 137 n n O12 H14 BCO sing 138 n n O14 H15 BCO sing 139 n n C11 H16 BCO sing 140 n n C11 H17 BCO sing 141 n n C13 H18 BCO sing 142 n n C13 H19 BCO sing 143 n n C13 H20 BCO sing 144 n n C14 H21 BCO sing 145 n n C14 H22 BCO sing 146 n n C14 H23 BCO sing 147 n n C10 H24 BCO sing 148 n n O11 H25 BCO sing 149 n n N6 H26 BCO sing 150 n n C17 H27 BCO sing 151 n n C18 H28 BCO sing 152 n n N7 H29 BCO sing 153 n n C20 H30 BCO sing 154 n n C20 H31 BCO sing 155 n n C21 H32 BCO sing 156 n n C21 H33 BCO sing 157 n n C23 H34 BCO sing 158 n n C24 H35 BCO sing 159 n n C25 H36 BCO sing 160 n n C25 H37 BCO sing 161 n n C25 H38 BCO sing 162 n n C17 H39 BCO sing 163 n n C18 H40 BCO sing 164 n n C23 H41 BCO sing 165 n n C24 H42 BCO sing 166 n n # _atom_sites.entry_id 4XC7 _atom_sites.fract_transf_matrix[1][1] 0.003143 _atom_sites.fract_transf_matrix[1][2] 0.001815 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003629 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002901 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BCO A 1 1101 1211 BCO BCO . D 3 TLA A 1 1102 1 TLA TLA . E 2 BCO B 1 1101 1212 BCO BCO . F 3 TLA B 1 1102 2 TLA TLA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O9 BCO . . . E 2 -252.333 -67.33 -29.264 1 197.05 ? O9 BCO 1101 B 1 HETATM 2 P P1 BCO . . . E 2 -252.684 -66.189 -28.355 1 199.05 ? P1 BCO 1101 B 1 HETATM 3 O O5 BCO . . . E 2 -252.833 -64.922 -29.176 1 199.4 ? O5 BCO 1101 B 1 HETATM 4 O O6 BCO . . . E 2 -253.987 -66.492 -27.644 1 198.68 ? O6 BCO 1101 B 1 HETATM 5 O O2 BCO . . . E 2 -251.556 -65.992 -27.296 1 161.52 ? O2 BCO 1101 B 1 HETATM 6 C C1 BCO . . . E 2 -251.027 -67.102 -26.621 1 157.48 ? C1 BCO 1101 B 1 HETATM 7 C C2 BCO . . . E 2 -249.73 -67.397 -27.112 1 154.29 ? C2 BCO 1101 B 1 HETATM 8 O O3 BCO . . . E 2 -249.49 -66.677 -28.332 1 155.16 ? O3 BCO 1101 B 1 HETATM 9 C C4 BCO . . . E 2 -248.799 -66.965 -26.1 1 149.1 ? C4 BCO 1101 B 1 HETATM 10 N N1 BCO . . . E 2 -247.676 -67.849 -25.866 1 137.73 ? N1 BCO 1101 B 1 HETATM 11 C C7 BCO . . . E 2 -247.738 -69.076 -25.327 1 133.93 ? C7 BCO 1101 B 1 HETATM 12 N N2 BCO . . . E 2 -246.499 -69.595 -25.267 1 129.48 ? N2 BCO 1101 B 1 HETATM 13 C C8 BCO . . . E 2 -245.644 -68.682 -25.776 1 125.8 ? C8 BCO 1101 B 1 HETATM 14 C C6 BCO . . . E 2 -246.384 -67.565 -26.161 1 129.58 ? C6 BCO 1101 B 1 HETATM 15 N N3 BCO . . . E 2 -245.74 -66.509 -26.704 1 126.41 ? N3 BCO 1101 B 1 HETATM 16 C C15 BCO . . . E 2 -244.411 -66.524 -26.875 1 123.33 ? C15 BCO 1101 B 1 HETATM 17 N N4 BCO . . . E 2 -243.69 -67.592 -26.509 1 120.49 ? N4 BCO 1101 B 1 HETATM 18 C C12 BCO . . . E 2 -244.256 -68.682 -25.961 1 120.65 ? C12 BCO 1101 B 1 HETATM 19 N N5 BCO . . . E 2 -243.445 -69.847 -25.565 1 118.47 ? N5 BCO 1101 B 1 HETATM 20 O O1 BCO . . . E 2 -249.508 -66.873 -24.9 1 152.94 ? O1 BCO 1101 B 1 HETATM 21 C C3 BCO . . . E 2 -250.867 -66.783 -25.195 1 155.65 ? C3 BCO 1101 B 1 HETATM 22 C C5 BCO . . . E 2 -251.61 -67.772 -24.375 1 155.62 ? C5 BCO 1101 B 1 HETATM 23 O O4 BCO . . . E 2 -250.889 -68.459 -23.371 1 156.86 ? O4 BCO 1101 B 1 HETATM 24 P P2 BCO . . . E 2 -251.551 -69.712 -22.633 1 194.48 ? P2 BCO 1101 B 1 HETATM 25 O O12 BCO . . . E 2 -252.971 -69.33 -22.164 1 194.74 ? O12 BCO 1101 B 1 HETATM 26 O O10 BCO . . . E 2 -251.603 -70.966 -23.67 1 139.22 ? O10 BCO 1101 B 1 HETATM 27 O O7 BCO . . . E 2 -250.701 -70.093 -21.408 1 194.04 ? O7 BCO 1101 B 1 # _model_server_stats.io_time_ms 319 _model_server_stats.parse_time_ms 56 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #