data_4XC8
#
_model_server_result.job_id            AfcyqAlJjL3Ag4-Eldnnkw 
_model_server_result.datetime_utc      '2024-11-24 13:26:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xc8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1101}' 
#
_entry.id    4XC8 
#
_exptl.entry_id    4XC8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              837.624 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'Butyryl Coenzyme A' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4XC8 
_cell.length_a            316.51 
_cell.length_b            316.51 
_cell.length_c            342.27 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XC8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 243 A SER 223 1_555 E MG MG . A MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? 
metalc ? metalc2 A O ILE 268 A ILE 248 1_555 F MG MG . A MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? 
metalc ? metalc3 A OD1 ASP 269 A ASP 249 1_555 F MG MG . A MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? 
metalc ? metalc4 A OD1 ASP 282 A ASP 262 1_555 E MG MG . A MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc5 A OD1 ASP 282 A ASP 262 1_555 F MG MG . A MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.982 ? 
metalc ? metalc6 A OD2 ASP 282 A ASP 262 1_555 F MG MG . A MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? 
metalc ? metalc7 A OE1 GLU 330 A GLU 310 1_555 F MG MG . A MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? 
metalc ? metalc8 D O2B GDP . A GDP 1102 1_555 E MG MG . A MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc9 B OG SER 243 B SER 223 1_555 I MG MG . B MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? 
metalc ? metalc10 B O ILE 268 B ILE 248 1_555 J MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? 
metalc ? metalc11 B OD1 ASP 269 B ASP 249 1_555 J MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? 
metalc ? metalc12 B OD1 ASP 282 B ASP 262 1_555 I MG MG . B MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc13 B OD1 ASP 282 B ASP 262 1_555 J MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.928 ? 
metalc ? metalc14 B OD2 ASP 282 B ASP 262 1_555 J MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? 
metalc ? metalc15 B OE1 GLU 330 B GLU 310 1_555 J MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? 
#
_chem_comp.formula           'C25 H42 N7 O17 P3 S' 
_chem_comp.formula_weight    837.624 
_chem_comp.id                BCO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'Butyryl Coenzyme A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'S-{(3S,5S,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} butanethioate (non-preferred name)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C15 N4 BCO doub 70 n y 
C15 N3 BCO sing 71 n y 
N4 C12 BCO sing 72 n y 
N3 C6 BCO doub 73 n y 
O9 P1 BCO doub 74 n n 
C12 N5 BCO sing 75 n n 
C12 C8 BCO doub 76 n y 
O3 C2 BCO sing 77 n n 
C6 C8 BCO sing 78 n y 
C6 N1 BCO sing 79 n y 
C2 C4 BCO sing 80 n n 
C2 C1 BCO sing 81 n n 
C8 N2 BCO sing 82 n y 
P1 O6 BCO sing 83 n n 
P1 O5 BCO sing 84 n n 
P1 O2 BCO sing 85 n n 
C4 N1 BCO sing 86 n n 
C4 O1 BCO sing 87 n n 
N1 C7 BCO sing 88 n y 
O2 C1 BCO sing 89 n n 
C1 C3 BCO sing 90 n n 
N2 C7 BCO doub 91 n y 
O1 C3 BCO sing 92 n n 
C3 C5 BCO sing 93 n n 
C5 O4 BCO sing 94 n n 
O4 P2 BCO sing 95 n n 
O10 P2 BCO doub 96 n n 
P2 O7 BCO sing 97 n n 
P2 O12 BCO sing 98 n n 
O7 P3 BCO sing 99 n n 
P3 O13 BCO doub 100 n n 
P3 O14 BCO sing 101 n n 
P3 O8 BCO sing 102 n n 
O8 C11 BCO sing 103 n n 
C14 C9 BCO sing 104 n n 
C11 C9 BCO sing 105 n n 
C9 C13 BCO sing 106 n n 
C9 C10 BCO sing 107 n n 
C10 O11 BCO sing 108 n n 
C10 C16 BCO sing 109 n n 
C16 O15 BCO doub 110 n n 
C16 N6 BCO sing 111 n n 
N6 C17 BCO sing 112 n n 
C17 C18 BCO sing 113 n n 
C18 C19 BCO sing 114 n n 
C19 O16 BCO doub 115 n n 
C19 N7 BCO sing 116 n n 
N7 C20 BCO sing 117 n n 
C20 C21 BCO sing 118 n n 
C21 S1 BCO sing 119 n n 
S1 C22 BCO sing 120 n n 
C22 O17 BCO doub 121 n n 
C22 C23 BCO sing 122 n n 
C23 C24 BCO sing 123 n n 
C24 C25 BCO sing 124 n n 
O5 H1 BCO sing 125 n n 
O6 H2 BCO sing 126 n n 
C1 H3 BCO sing 127 n n 
C2 H4 BCO sing 128 n n 
O3 H5 BCO sing 129 n n 
C4 H6 BCO sing 130 n n 
C7 H7 BCO sing 131 n n 
C15 H8 BCO sing 132 n n 
N5 H9 BCO sing 133 n n 
N5 H10 BCO sing 134 n n 
C3 H11 BCO sing 135 n n 
C5 H12 BCO sing 136 n n 
C5 H13 BCO sing 137 n n 
O12 H14 BCO sing 138 n n 
O14 H15 BCO sing 139 n n 
C11 H16 BCO sing 140 n n 
C11 H17 BCO sing 141 n n 
C13 H18 BCO sing 142 n n 
C13 H19 BCO sing 143 n n 
C13 H20 BCO sing 144 n n 
C14 H21 BCO sing 145 n n 
C14 H22 BCO sing 146 n n 
C14 H23 BCO sing 147 n n 
C10 H24 BCO sing 148 n n 
O11 H25 BCO sing 149 n n 
N6 H26 BCO sing 150 n n 
C17 H27 BCO sing 151 n n 
C18 H28 BCO sing 152 n n 
N7 H29 BCO sing 153 n n 
C20 H30 BCO sing 154 n n 
C20 H31 BCO sing 155 n n 
C21 H32 BCO sing 156 n n 
C21 H33 BCO sing 157 n n 
C23 H34 BCO sing 158 n n 
C24 H35 BCO sing 159 n n 
C25 H36 BCO sing 160 n n 
C25 H37 BCO sing 161 n n 
C25 H38 BCO sing 162 n n 
C17 H39 BCO sing 163 n n 
C18 H40 BCO sing 164 n n 
C23 H41 BCO sing 165 n n 
C24 H42 BCO sing 166 n n 
#
_atom_sites.entry_id                     4XC8 
_atom_sites.fract_transf_matrix[1][1]    0.003159 
_atom_sites.fract_transf_matrix[1][2]    0.001824 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003648 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002922 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 BCO A 1 1101 1211 BCO BCO . 
D 3 GDP A 1 1102 1200 GDP GDP . 
E 4 MG A 1 1103 1 MG MG . 
F 4 MG A 1 1104 3 MG MG . 
G 2 BCO B 1 1101 1212 BCO BCO . 
H 3 GDP B 1 1102 1201 GDP GDP . 
I 4 MG B 1 1103 2 MG MG . 
J 4 MG B 1 1104 4 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O9 BCO . . . G 2 -251.06 -66.787 -28.127 1 180.67 ? O9 BCO 1101 B 1 
HETATM 2 P P1 BCO . . . G 2 -251.255 -65.702 -27.084 1 182.53 ? P1 BCO 1101 B 1 
HETATM 3 O O5 BCO . . . G 2 -251.331 -64.353 -27.769 1 182.34 ? O5 BCO 1101 B 1 
HETATM 4 O O6 BCO . . . G 2 -252.534 -65.952 -26.34 1 182.83 ? O6 BCO 1101 B 1 
HETATM 5 O O2 BCO . . . G 2 -250.052 -65.702 -26.089 1 139 ? O2 BCO 1101 B 1 
HETATM 6 C C1 BCO . . . G 2 -249.623 -66.888 -25.472 1 135.59 ? C1 BCO 1101 B 1 
HETATM 7 C C2 BCO . . . G 2 -248.412 -67.335 -26.059 1 132.24 ? C2 BCO 1101 B 1 
HETATM 8 O O3 BCO . . . G 2 -248.298 -66.839 -27.401 1 132.8 ? O3 BCO 1101 B 1 
HETATM 9 C C4 BCO . . . G 2 -247.369 -66.768 -25.248 1 129.34 ? C4 BCO 1101 B 1 
HETATM 10 N N1 BCO . . . G 2 -246.155 -67.547 -25.119 1 121.52 ? N1 BCO 1101 B 1 
HETATM 11 C C7 BCO . . . G 2 -246.056 -68.78 -24.598 1 118.26 ? C7 BCO 1101 B 1 
HETATM 12 N N2 BCO . . . G 2 -244.771 -69.174 -24.642 1 115.21 ? N2 BCO 1101 B 1 
HETATM 13 C C8 BCO . . . G 2 -244.049 -68.174 -25.197 1 113.22 ? C8 BCO 1101 B 1 
HETATM 14 C C6 BCO . . . G 2 -244.924 -67.132 -25.503 1 116 ? C6 BCO 1101 B 1 
HETATM 15 N N3 BCO . . . G 2 -244.432 -66.009 -26.073 1 113.73 ? N3 BCO 1101 B 1 
HETATM 16 C C15 BCO . . . G 2 -243.125 -65.888 -26.344 1 111.8 ? C15 BCO 1101 B 1 
HETATM 17 N N4 BCO . . . G 2 -242.276 -66.882 -26.056 1 110.06 ? N4 BCO 1101 B 1 
HETATM 18 C C12 BCO . . . G 2 -242.686 -68.032 -25.487 1 109.95 ? C12 BCO 1101 B 1 
HETATM 19 N N5 BCO . . . G 2 -241.73 -69.111 -25.179 1 108.41 ? N5 BCO 1101 B 1 
HETATM 20 O O1 BCO . . . G 2 -247.899 -66.631 -23.964 1 133.44 ? O1 BCO 1101 B 1 
HETATM 21 C C3 BCO . . . G 2 -249.288 -66.603 -24.067 1 135 ? C3 BCO 1101 B 1 
HETATM 22 C C5 BCO . . . G 2 -249.865 -67.632 -23.164 1 134.99 ? C5 BCO 1101 B 1 
HETATM 23 O O4 BCO . . . G 2 -249.81 -68.987 -23.564 1 134.87 ? O4 BCO 1101 B 1 
HETATM 24 P P2 BCO . . . G 2 -250.244 -70.125 -22.529 1 194.35 ? P2 BCO 1101 B 1 
HETATM 25 O O12 BCO . . . G 2 -251.676 -69.815 -22.039 1 194.47 ? O12 BCO 1101 B 1 
HETATM 26 O O10 BCO . . . G 2 -249.286 -70.114 -21.324 1 194.94 ? O10 BCO 1101 B 1 
HETATM 27 O O7 BCO . . . G 2 -250.201 -71.586 -23.253 1 267.89 ? O7 BCO 1101 B 1 
HETATM 28 P P3 BCO . . . G 2 -249.267 -71.895 -24.475 1 221.15 ? P3 BCO 1101 B 1 
HETATM 29 O O14 BCO . . . G 2 -247.871 -71.454 -24.183 1 221.5 ? O14 BCO 1101 B 1 
HETATM 30 O O13 BCO . . . G 2 -249.776 -71.159 -25.69 1 220.93 ? O13 BCO 1101 B 1 
HETATM 31 O O8 BCO . . . G 2 -249.259 -73.457 -24.777 1 153.92 ? O8 BCO 1101 B 1 
HETATM 32 C C11 BCO . . . G 2 -249.851 -74.384 -23.884 1 153.38 ? C11 BCO 1101 B 1 
HETATM 33 C C9 BCO . . . G 2 -250.157 -75.788 -24.408 1 150.67 ? C9 BCO 1101 B 1 
HETATM 34 C C13 BCO . . . G 2 -250.591 -76.678 -23.262 1 150.06 ? C13 BCO 1101 B 1 
HETATM 35 C C14 BCO . . . G 2 -248.854 -76.389 -25.047 1 141.21 ? C14 BCO 1101 B 1 
HETATM 36 C C10 BCO . . . G 2 -251.221 -75.733 -25.45 1 148.01 ? C10 BCO 1101 B 1 
HETATM 37 O O11 BCO . . . G 2 -251.024 -76.843 -26.303 1 145.46 ? O11 BCO 1101 B 1 
HETATM 38 C C16 BCO . . . G 2 -252.629 -75.732 -24.88 1 147.24 ? C16 BCO 1101 B 1 
HETATM 39 O O15 BCO . . . G 2 -253.38 -74.768 -25.079 1 146.69 ? O15 BCO 1101 B 1 
#
_model_server_stats.io_time_ms              128 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           214 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           39 
#