data_4XCJ
#
_model_server_result.job_id            HuYVXcK-PG-NwwMWL7CZXQ 
_model_server_result.datetime_utc      '2024-11-16 16:53:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xcj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    4XCJ 
#
_exptl.entry_id    4XCJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.39 
_cell.angle_gamma         90 
_cell.entry_id            4XCJ 
_cell.length_a            41.84 
_cell.length_b            46.65 
_cell.length_c            59.62 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XCJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B O2B ADP . A ADP 301 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? 
metalc ? metalc2 B O1A ADP . A ADP 301 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? 
metalc ? metalc3 C MG MG . A MG 302 1_555 D O HOH . A HOH 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc4 C MG MG . A MG 302 1_555 D O HOH . A HOH 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? 
metalc ? metalc5 C MG MG . A MG 302 1_555 D O HOH . A HOH 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     4XCJ 
_atom_sites.fract_transf_matrix[1][1]    0.023901 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007485 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021436 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017576 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 301 1 ADP ADP . 
C 3 MG A 1 302 1 MG MG . 
D 4 HOH A 1 401 103 HOH HOH . 
D 4 HOH A 2 402 106 HOH HOH . 
D 4 HOH A 3 403 92 HOH HOH . 
D 4 HOH A 4 404 99 HOH HOH . 
D 4 HOH A 5 405 63 HOH HOH . 
D 4 HOH A 6 406 76 HOH HOH . 
D 4 HOH A 7 407 33 HOH HOH . 
D 4 HOH A 8 408 85 HOH HOH . 
D 4 HOH A 9 409 47 HOH HOH . 
D 4 HOH A 10 410 71 HOH HOH . 
D 4 HOH A 11 411 46 HOH HOH . 
D 4 HOH A 12 412 75 HOH HOH . 
D 4 HOH A 13 413 72 HOH HOH . 
D 4 HOH A 14 414 107 HOH HOH . 
D 4 HOH A 15 415 65 HOH HOH . 
D 4 HOH A 16 416 87 HOH HOH . 
D 4 HOH A 17 417 27 HOH HOH . 
D 4 HOH A 18 418 84 HOH HOH . 
D 4 HOH A 19 419 14 HOH HOH . 
D 4 HOH A 20 420 101 HOH HOH . 
D 4 HOH A 21 421 73 HOH HOH . 
D 4 HOH A 22 422 105 HOH HOH . 
D 4 HOH A 23 423 83 HOH HOH . 
D 4 HOH A 24 424 32 HOH HOH . 
D 4 HOH A 25 425 74 HOH HOH . 
D 4 HOH A 26 426 48 HOH HOH . 
D 4 HOH A 27 427 13 HOH HOH . 
D 4 HOH A 28 428 68 HOH HOH . 
D 4 HOH A 29 429 1 HOH HOH . 
D 4 HOH A 30 430 2 HOH HOH . 
D 4 HOH A 31 431 3 HOH HOH . 
D 4 HOH A 32 432 4 HOH HOH . 
D 4 HOH A 33 433 5 HOH HOH . 
D 4 HOH A 34 434 6 HOH HOH . 
D 4 HOH A 35 435 7 HOH HOH . 
D 4 HOH A 36 436 8 HOH HOH . 
D 4 HOH A 37 437 9 HOH HOH . 
D 4 HOH A 38 438 10 HOH HOH . 
D 4 HOH A 39 439 11 HOH HOH . 
D 4 HOH A 40 440 12 HOH HOH . 
D 4 HOH A 41 441 15 HOH HOH . 
D 4 HOH A 42 442 16 HOH HOH . 
D 4 HOH A 43 443 17 HOH HOH . 
D 4 HOH A 44 444 18 HOH HOH . 
D 4 HOH A 45 445 19 HOH HOH . 
D 4 HOH A 46 446 20 HOH HOH . 
D 4 HOH A 47 447 21 HOH HOH . 
D 4 HOH A 48 448 22 HOH HOH . 
D 4 HOH A 49 449 23 HOH HOH . 
D 4 HOH A 50 450 24 HOH HOH . 
D 4 HOH A 51 451 25 HOH HOH . 
D 4 HOH A 52 452 26 HOH HOH . 
D 4 HOH A 53 453 28 HOH HOH . 
D 4 HOH A 54 454 29 HOH HOH . 
D 4 HOH A 55 455 30 HOH HOH . 
D 4 HOH A 56 456 31 HOH HOH . 
D 4 HOH A 57 457 34 HOH HOH . 
D 4 HOH A 58 458 35 HOH HOH . 
D 4 HOH A 59 459 36 HOH HOH . 
D 4 HOH A 60 460 37 HOH HOH . 
D 4 HOH A 61 461 38 HOH HOH . 
D 4 HOH A 62 462 39 HOH HOH . 
D 4 HOH A 63 463 40 HOH HOH . 
D 4 HOH A 64 464 41 HOH HOH . 
D 4 HOH A 65 465 42 HOH HOH . 
D 4 HOH A 66 466 43 HOH HOH . 
D 4 HOH A 67 467 44 HOH HOH . 
D 4 HOH A 68 468 45 HOH HOH . 
D 4 HOH A 69 469 49 HOH HOH . 
D 4 HOH A 70 470 50 HOH HOH . 
D 4 HOH A 71 471 51 HOH HOH . 
D 4 HOH A 72 472 52 HOH HOH . 
D 4 HOH A 73 473 53 HOH HOH . 
D 4 HOH A 74 474 54 HOH HOH . 
D 4 HOH A 75 475 55 HOH HOH . 
D 4 HOH A 76 476 56 HOH HOH . 
D 4 HOH A 77 477 57 HOH HOH . 
D 4 HOH A 78 478 58 HOH HOH . 
D 4 HOH A 79 479 59 HOH HOH . 
D 4 HOH A 80 480 60 HOH HOH . 
D 4 HOH A 81 481 61 HOH HOH . 
D 4 HOH A 82 482 62 HOH HOH . 
D 4 HOH A 83 483 64 HOH HOH . 
D 4 HOH A 84 484 66 HOH HOH . 
D 4 HOH A 85 485 67 HOH HOH . 
D 4 HOH A 86 486 69 HOH HOH . 
D 4 HOH A 87 487 70 HOH HOH . 
D 4 HOH A 88 488 77 HOH HOH . 
D 4 HOH A 89 489 78 HOH HOH . 
D 4 HOH A 90 490 79 HOH HOH . 
D 4 HOH A 91 491 80 HOH HOH . 
D 4 HOH A 92 492 81 HOH HOH . 
D 4 HOH A 93 493 82 HOH HOH . 
D 4 HOH A 94 494 86 HOH HOH . 
D 4 HOH A 95 495 88 HOH HOH . 
D 4 HOH A 96 496 89 HOH HOH . 
D 4 HOH A 97 497 90 HOH HOH . 
D 4 HOH A 98 498 91 HOH HOH . 
D 4 HOH A 99 499 93 HOH HOH . 
D 4 HOH A 100 500 94 HOH HOH . 
D 4 HOH A 101 501 95 HOH HOH . 
D 4 HOH A 102 502 96 HOH HOH . 
D 4 HOH A 103 503 97 HOH HOH . 
D 4 HOH A 104 504 98 HOH HOH . 
D 4 HOH A 105 505 100 HOH HOH . 
D 4 HOH A 106 506 102 HOH HOH . 
D 4 HOH A 107 507 104 HOH HOH . 
D 4 HOH A 108 508 108 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . B 2 18.243 -11.174 5.54 1 27.42 ? PB ADP 301 A 1 
HETATM 2 O O1B ADP . . . B 2 17.959 -10.812 4.096 1 27.89 ? O1B ADP 301 A 1 
HETATM 3 O O2B ADP . . . B 2 17.4 -12.316 6.067 1 26.85 ? O2B ADP 301 A 1 
HETATM 4 O O3B ADP . . . B 2 19.71 -11.335 5.841 1 27.57 ? O3B ADP 301 A 1 
HETATM 5 P PA ADP . . . B 2 16.84 -9.738 7.635 1 26.12 ? PA ADP 301 A 1 
HETATM 6 O O1A ADP . . . B 2 15.706 -10.74 7.532 1 24.66 ? O1A ADP 301 A 1 
HETATM 7 O O2A ADP . . . B 2 16.566 -8.274 7.845 1 21.94 ? O2A ADP 301 A 1 
HETATM 8 O O3A ADP . . . B 2 17.766 -9.833 6.303 1 25.68 ? O3A ADP 301 A 1 
HETATM 9 O O5' ADP . . . B 2 17.828 -10.23 8.805 1 26.85 ? O5' ADP 301 A 1 
HETATM 10 C C5' ADP . . . B 2 18.941 -9.405 9.144 1 28.48 ? C5' ADP 301 A 1 
HETATM 11 C C4' ADP . . . B 2 20.071 -10.256 9.697 1 28.76 ? C4' ADP 301 A 1 
HETATM 12 O O4' ADP . . . B 2 19.836 -10.464 11.087 1 28.8 ? O4' ADP 301 A 1 
HETATM 13 C C3' ADP . . . B 2 20.195 -11.66 9.119 1 29.26 ? C3' ADP 301 A 1 
HETATM 14 O O3' ADP . . . B 2 20.992 -11.715 7.934 1 30.9 ? O3' ADP 301 A 1 
HETATM 15 C C2' ADP . . . B 2 20.896 -12.404 10.23 1 29.27 ? C2' ADP 301 A 1 
HETATM 16 O O2' ADP . . . B 2 22.305 -12.156 10.133 1 28.57 ? O2' ADP 301 A 1 
HETATM 17 C C1' ADP . . . B 2 20.356 -11.733 11.483 1 27.59 ? C1' ADP 301 A 1 
HETATM 18 N N9 ADP . . . B 2 19.265 -12.563 12.052 1 27.34 ? N9 ADP 301 A 1 
HETATM 19 C C8 ADP . . . B 2 17.945 -12.271 12.042 1 27.19 ? C8 ADP 301 A 1 
HETATM 20 N N7 ADP . . . B 2 17.219 -13.24 12.657 1 25.32 ? N7 ADP 301 A 1 
HETATM 21 C C5 ADP . . . B 2 18.092 -14.188 13.056 1 25.63 ? C5 ADP 301 A 1 
HETATM 22 C C6 ADP . . . B 2 17.999 -15.481 13.764 1 24.75 ? C6 ADP 301 A 1 
HETATM 23 N N6 ADP . . . B 2 16.796 -15.981 14.156 1 24.42 ? N6 ADP 301 A 1 
HETATM 24 N N1 ADP . . . B 2 19.151 -16.152 13.993 1 24.7 ? N1 ADP 301 A 1 
HETATM 25 C C2 ADP . . . B 2 20.356 -15.685 13.597 1 25.37 ? C2 ADP 301 A 1 
HETATM 26 N N3 ADP . . . B 2 20.514 -14.514 12.956 1 25.35 ? N3 ADP 301 A 1 
HETATM 27 C C4 ADP . . . B 2 19.437 -13.737 12.662 1 25.97 ? C4 ADP 301 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#