data_4XCY
#
_model_server_result.job_id            JlGQakPkISUpnY2WF634NQ 
_model_server_result.datetime_utc      '2024-11-27 06:08:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xcy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":301}' 
#
_entry.id    4XCY 
#
_exptl.entry_id    4XCY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              442.438 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-3-{[(R)-{[(2R)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-2-(hexanoyloxy)propyl hexanoate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4XCY 
_cell.length_a            150.22 
_cell.length_b            150.22 
_cell.length_c            472.16 
_cell.Z_PDB               72 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XCY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
PISA dimeric 2 author_and_software_defined_assembly 5 
PISA dimeric 2 author_and_software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,M,N 1 1 
C,D,O,P,Q 2 1 
E,F,R 3 1 
G,H,S 4 1 
I,J 5 1 
K,L,T 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 N N N 
? 4 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 89 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 A SG CYS 135 L CYS 134 1_555 A SG CYS 195 L CYS 194 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 A SG CYS 135 L CYS 134 1_555 A SG CYS 195 L CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf4 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf6 B SG CYS 154 H CYS 142 1_555 B SG CYS 210 H CYS 208 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 B SG CYS 154 H CYS 142 1_555 B SG CYS 210 H CYS 208 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf8 C SG CYS 23 B CYS 23 1_555 C SG CYS 89 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf9 C SG CYS 135 B CYS 134 1_555 C SG CYS 195 B CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf10 C SG CYS 135 B CYS 134 1_555 C SG CYS 195 B CYS 194 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf11 D SG CYS 22 A CYS 22 1_555 D SG CYS 96 A CYS 92 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf12 D SG CYS 22 A CYS 22 1_555 D SG CYS 96 A CYS 92 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf13 D SG CYS 154 A CYS 142 1_555 D SG CYS 210 A CYS 208 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf14 D SG CYS 154 A CYS 142 1_555 D SG CYS 210 A CYS 208 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf15 E SG CYS 23 D CYS 23 1_555 E SG CYS 89 D CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf16 E SG CYS 135 D CYS 134 1_555 E SG CYS 195 D CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf17 F SG CYS 22 C CYS 22 1_555 F SG CYS 96 C CYS 92 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf18 F SG CYS 22 C CYS 22 1_555 F SG CYS 96 C CYS 92 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf19 F SG CYS 154 C CYS 142 1_555 F SG CYS 210 C CYS 208 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf20 F SG CYS 154 C CYS 142 1_555 F SG CYS 210 C CYS 208 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf21 G SG CYS 23 F CYS 23 1_555 G SG CYS 89 F CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf22 G SG CYS 135 F CYS 134 1_555 G SG CYS 195 F CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf23 G SG CYS 135 F CYS 134 1_555 G SG CYS 195 F CYS 194 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf24 H SG CYS 22 E CYS 22 1_555 H SG CYS 96 E CYS 92 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf25 H SG CYS 22 E CYS 22 1_555 H SG CYS 96 E CYS 92 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf26 H SG CYS 154 E CYS 142 1_555 H SG CYS 210 E CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf27 I SG CYS 23 I CYS 23 1_555 I SG CYS 89 I CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf28 I SG CYS 135 I CYS 134 1_555 I SG CYS 195 I CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf29 J SG CYS 22 G CYS 22 1_555 J SG CYS 96 G CYS 92 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf30 J SG CYS 22 G CYS 22 1_555 J SG CYS 96 G CYS 92 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf31 J SG CYS 154 G CYS 142 1_555 J SG CYS 210 G CYS 208 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf32 J SG CYS 154 G CYS 142 1_555 J SG CYS 210 G CYS 208 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf33 K SG CYS 23 K CYS 23 1_555 K SG CYS 89 K CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf34 K SG CYS 135 K CYS 134 1_555 K SG CYS 195 K CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf35 K SG CYS 135 K CYS 134 1_555 K SG CYS 195 K CYS 194 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf36 L SG CYS 22 J CYS 22 1_555 L SG CYS 96 J CYS 92 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf37 L SG CYS 22 J CYS 22 1_555 L SG CYS 96 J CYS 92 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf38 L SG CYS 154 J CYS 142 1_555 L SG CYS 210 J CYS 208 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf39 L SG CYS 154 J CYS 142 1_555 L SG CYS 210 J CYS 208 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.037 ? 
#
_chem_comp.formula           'C18 H35 O10 P' 
_chem_comp.formula_weight    442.438 
_chem_comp.id                44G 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-3-{[(R)-{[(2R)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-2-(hexanoyloxy)propyl hexanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O6 C6 44G sing 1 n n 
C6 C5 44G sing 2 n n 
C1 C2 44G sing 3 n n 
C1 O3P 44G sing 4 n n 
C5 O5 44G sing 5 n n 
C5 C4 44G sing 6 n n 
C2 C10 44G sing 7 n n 
C2 O2 44G sing 8 n n 
O31 C31 44G doub 9 n n 
O1P P 44G doub 10 n n 
O4P C4 44G sing 11 n n 
O4P P 44G sing 12 n n 
C31 C32 44G sing 13 n n 
C31 O2 44G sing 14 n n 
C10 O1 44G sing 15 n n 
P O3P 44G sing 16 n n 
P O2P 44G sing 17 n n 
O3 C12 44G doub 18 n n 
O1 C12 44G sing 19 n n 
C12 C13 44G sing 20 n n 
C32 H1 44G sing 21 n n 
C32 H2 44G sing 22 n n 
C2 H4 44G sing 23 n n 
C1 H5 44G sing 24 n n 
C1 H6 44G sing 25 n n 
O2P H7 44G sing 26 n n 
C4 H8 44G sing 27 n n 
C4 H9 44G sing 28 n n 
C5 H10 44G sing 29 n n 
O5 H11 44G sing 30 n n 
C6 H12 44G sing 31 n n 
C6 H13 44G sing 32 n n 
O6 H14 44G sing 33 n n 
C10 H15 44G sing 34 n n 
C10 H16 44G sing 35 n n 
C13 H17 44G sing 36 n n 
C13 H18 44G sing 37 n n 
C32 C3 44G sing 38 n n 
C3 C7 44G sing 39 n n 
C7 C8 44G sing 40 n n 
C8 C9 44G sing 41 n n 
C13 C11 44G sing 42 n n 
C11 C14 44G sing 43 n n 
C14 C15 44G sing 44 n n 
C15 C16 44G sing 45 n n 
C3 H3 44G sing 46 n n 
C3 H19 44G sing 47 n n 
C7 H20 44G sing 48 n n 
C7 H21 44G sing 49 n n 
C8 H22 44G sing 50 n n 
C8 H23 44G sing 51 n n 
C9 H24 44G sing 52 n n 
C9 H25 44G sing 53 n n 
C9 H26 44G sing 54 n n 
C11 H27 44G sing 55 n n 
C11 H28 44G sing 56 n n 
C14 H29 44G sing 57 n n 
C14 H30 44G sing 58 n n 
C15 H31 44G sing 59 n n 
C15 H32 44G sing 60 n n 
C16 H33 44G sing 61 n n 
C16 H34 44G sing 62 n n 
C16 H35 44G sing 63 n n 
#
_atom_sites.entry_id                     4XCY 
_atom_sites.fract_transf_matrix[1][1]    0.006657 
_atom_sites.fract_transf_matrix[1][2]    0.003843 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007687 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002118 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 3 UNL L 1 301 301 UNL UNL . 
N 4 44G H 1 301 301 44G 44G . 
O 3 UNL B 1 301 301 UNL UNL . 
P 4 44G A 1 301 301 44G 44G . 
Q 5 GOL A 1 302 302 GOL GOL . 
R 3 UNL D 1 301 301 UNL UNL . 
S 3 UNL F 1 301 301 UNL UNL . 
T 3 UNL K 1 301 301 UNL UNL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C32 44G . . . N 4 49.436 -60.972 31.699 1 108.97 ? C32 44G 301 H 1 
HETATM 2 C C31 44G . . . N 4 49.89 -59.947 32.761 1 108.97 ? C31 44G 301 H 1 
HETATM 3 O O31 44G . . . N 4 49.171 -59.01 33.033 1 108.97 ? O31 44G 301 H 1 
HETATM 4 O O2 44G . . . N 4 51.26 -59.798 32.75 1 108.97 ? O2 44G 301 H 1 
HETATM 5 C C2 44G . . . N 4 51.892 -58.601 33.299 1 108.97 ? C2 44G 301 H 1 
HETATM 6 C C1 44G . . . N 4 53.342 -58.605 32.903 1 108.97 ? C1 44G 301 H 1 
HETATM 7 O O3P 44G . . . N 4 54.167 -58.457 34.036 1 108.97 ? O3P 44G 301 H 1 
HETATM 8 P P 44G . . . N 4 55.406 -59.446 34.205 1 108.97 ? P 44G 301 H 1 
HETATM 9 O O1P 44G . . . N 4 56.41 -59.193 33.107 1 108.97 ? O1P 44G 301 H 1 
HETATM 10 O O2P 44G . . . N 4 56.056 -59.206 35.54 1 108.97 ? O2P 44G 301 H 1 
HETATM 11 O O4P 44G . . . N 4 54.903 -60.928 34.136 1 108.97 ? O4P 44G 301 H 1 
HETATM 12 C C4 44G . . . N 4 55.794 -61.973 34.454 1 108.97 ? C4 44G 301 H 1 
HETATM 13 C C5 44G . . . N 4 55.179 -62.852 35.468 1 108.97 ? C5 44G 301 H 1 
HETATM 14 O O5 44G . . . N 4 55.492 -64.182 35.214 1 108.97 ? O5 44G 301 H 1 
HETATM 15 C C6 44G . . . N 4 53.67 -62.76 35.497 1 108.97 ? C6 44G 301 H 1 
HETATM 16 O O6 44G . . . N 4 53.042 -63.027 36.696 1 108.97 ? O6 44G 301 H 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           381 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           16 
#