data_4XCY # _model_server_result.job_id -vs9juNoTP11xYDLXQKQKw _model_server_result.datetime_utc '2024-11-14 09:42:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xcy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":301}' # _entry.id 4XCY # _exptl.entry_id 4XCY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 442.438 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-{[(R)-{[(2R)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-2-(hexanoyloxy)propyl hexanoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4XCY _cell.length_a 150.22 _cell.length_b 150.22 _cell.length_c 472.16 _cell.Z_PDB 72 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XCY _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 PISA dimeric 2 author_and_software_defined_assembly 5 PISA dimeric 2 author_and_software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,M,N 1 1 C,D,O,P,Q 2 1 E,F,R 3 1 G,H,S 4 1 I,J 5 1 K,L,T 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 N N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 89 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 135 L CYS 134 1_555 A SG CYS 195 L CYS 194 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 135 L CYS 134 1_555 A SG CYS 195 L CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 B SG CYS 154 H CYS 142 1_555 B SG CYS 210 H CYS 208 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 B SG CYS 154 H CYS 142 1_555 B SG CYS 210 H CYS 208 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.037 ? disulf ? disulf8 C SG CYS 23 B CYS 23 1_555 C SG CYS 89 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf9 C SG CYS 135 B CYS 134 1_555 C SG CYS 195 B CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.035 ? disulf ? disulf10 C SG CYS 135 B CYS 134 1_555 C SG CYS 195 B CYS 194 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.033 ? disulf ? disulf11 D SG CYS 22 A CYS 22 1_555 D SG CYS 96 A CYS 92 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.034 ? disulf ? disulf12 D SG CYS 22 A CYS 22 1_555 D SG CYS 96 A CYS 92 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 D SG CYS 154 A CYS 142 1_555 D SG CYS 210 A CYS 208 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.028 ? disulf ? disulf14 D SG CYS 154 A CYS 142 1_555 D SG CYS 210 A CYS 208 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.036 ? disulf ? disulf15 E SG CYS 23 D CYS 23 1_555 E SG CYS 89 D CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf16 E SG CYS 135 D CYS 134 1_555 E SG CYS 195 D CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf17 F SG CYS 22 C CYS 22 1_555 F SG CYS 96 C CYS 92 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.029 ? disulf ? disulf18 F SG CYS 22 C CYS 22 1_555 F SG CYS 96 C CYS 92 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.032 ? disulf ? disulf19 F SG CYS 154 C CYS 142 1_555 F SG CYS 210 C CYS 208 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.032 ? disulf ? disulf20 F SG CYS 154 C CYS 142 1_555 F SG CYS 210 C CYS 208 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.038 ? disulf ? disulf21 G SG CYS 23 F CYS 23 1_555 G SG CYS 89 F CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf22 G SG CYS 135 F CYS 134 1_555 G SG CYS 195 F CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.036 ? disulf ? disulf23 G SG CYS 135 F CYS 134 1_555 G SG CYS 195 F CYS 194 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.031 ? disulf ? disulf24 H SG CYS 22 E CYS 22 1_555 H SG CYS 96 E CYS 92 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.031 ? disulf ? disulf25 H SG CYS 22 E CYS 22 1_555 H SG CYS 96 E CYS 92 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.032 ? disulf ? disulf26 H SG CYS 154 E CYS 142 1_555 H SG CYS 210 E CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf27 I SG CYS 23 I CYS 23 1_555 I SG CYS 89 I CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf28 I SG CYS 135 I CYS 134 1_555 I SG CYS 195 I CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf29 J SG CYS 22 G CYS 22 1_555 J SG CYS 96 G CYS 92 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.031 ? disulf ? disulf30 J SG CYS 22 G CYS 22 1_555 J SG CYS 96 G CYS 92 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.033 ? disulf ? disulf31 J SG CYS 154 G CYS 142 1_555 J SG CYS 210 G CYS 208 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf32 J SG CYS 154 G CYS 142 1_555 J SG CYS 210 G CYS 208 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf33 K SG CYS 23 K CYS 23 1_555 K SG CYS 89 K CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf34 K SG CYS 135 K CYS 134 1_555 K SG CYS 195 K CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.034 ? disulf ? disulf35 K SG CYS 135 K CYS 134 1_555 K SG CYS 195 K CYS 194 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.033 ? disulf ? disulf36 L SG CYS 22 J CYS 22 1_555 L SG CYS 96 J CYS 92 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.032 ? disulf ? disulf37 L SG CYS 22 J CYS 22 1_555 L SG CYS 96 J CYS 92 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.03 ? disulf ? disulf38 L SG CYS 154 J CYS 142 1_555 L SG CYS 210 J CYS 208 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf39 L SG CYS 154 J CYS 142 1_555 L SG CYS 210 J CYS 208 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C18 H35 O10 P' _chem_comp.formula_weight 442.438 _chem_comp.id 44G _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-{[(R)-{[(2R)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-2-(hexanoyloxy)propyl hexanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C6 44G sing 1 n n C6 C5 44G sing 2 n n C1 C2 44G sing 3 n n C1 O3P 44G sing 4 n n C5 O5 44G sing 5 n n C5 C4 44G sing 6 n n C2 C10 44G sing 7 n n C2 O2 44G sing 8 n n O31 C31 44G doub 9 n n O1P P 44G doub 10 n n O4P C4 44G sing 11 n n O4P P 44G sing 12 n n C31 C32 44G sing 13 n n C31 O2 44G sing 14 n n C10 O1 44G sing 15 n n P O3P 44G sing 16 n n P O2P 44G sing 17 n n O3 C12 44G doub 18 n n O1 C12 44G sing 19 n n C12 C13 44G sing 20 n n C32 H1 44G sing 21 n n C32 H2 44G sing 22 n n C2 H4 44G sing 23 n n C1 H5 44G sing 24 n n C1 H6 44G sing 25 n n O2P H7 44G sing 26 n n C4 H8 44G sing 27 n n C4 H9 44G sing 28 n n C5 H10 44G sing 29 n n O5 H11 44G sing 30 n n C6 H12 44G sing 31 n n C6 H13 44G sing 32 n n O6 H14 44G sing 33 n n C10 H15 44G sing 34 n n C10 H16 44G sing 35 n n C13 H17 44G sing 36 n n C13 H18 44G sing 37 n n C32 C3 44G sing 38 n n C3 C7 44G sing 39 n n C7 C8 44G sing 40 n n C8 C9 44G sing 41 n n C13 C11 44G sing 42 n n C11 C14 44G sing 43 n n C14 C15 44G sing 44 n n C15 C16 44G sing 45 n n C3 H3 44G sing 46 n n C3 H19 44G sing 47 n n C7 H20 44G sing 48 n n C7 H21 44G sing 49 n n C8 H22 44G sing 50 n n C8 H23 44G sing 51 n n C9 H24 44G sing 52 n n C9 H25 44G sing 53 n n C9 H26 44G sing 54 n n C11 H27 44G sing 55 n n C11 H28 44G sing 56 n n C14 H29 44G sing 57 n n C14 H30 44G sing 58 n n C15 H31 44G sing 59 n n C15 H32 44G sing 60 n n C16 H33 44G sing 61 n n C16 H34 44G sing 62 n n C16 H35 44G sing 63 n n # _atom_sites.entry_id 4XCY _atom_sites.fract_transf_matrix[1][1] 0.006657 _atom_sites.fract_transf_matrix[1][2] 0.003843 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007687 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002118 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 UNL L 1 301 301 UNL UNL . N 4 44G H 1 301 301 44G 44G . O 3 UNL B 1 301 301 UNL UNL . P 4 44G A 1 301 301 44G 44G . Q 5 GOL A 1 302 302 GOL GOL . R 3 UNL D 1 301 301 UNL UNL . S 3 UNL F 1 301 301 UNL UNL . T 3 UNL K 1 301 301 UNL UNL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C32 44G . . . P 4 97.516 -57.593 -33.063 1 109.75 ? C32 44G 301 A 1 HETATM 2 C C31 44G . . . P 4 96.044 -58.021 -33.247 1 109.75 ? C31 44G 301 A 1 HETATM 3 O O31 44G . . . P 4 95.183 -57.175 -33.344 1 109.75 ? O31 44G 301 A 1 HETATM 4 O O2 44G . . . P 4 95.785 -59.22 -32.617 1 109.75 ? O2 44G 301 A 1 HETATM 5 C C2 44G . . . P 4 95.231 -60.337 -33.377 1 109.75 ? C2 44G 301 A 1 HETATM 6 C C1 44G . . . P 4 93.769 -60.092 -33.651 1 109.75 ? C1 44G 301 A 1 HETATM 7 O O3P 44G . . . P 4 93.043 -60.027 -32.441 1 109.75 ? O3P 44G 301 A 1 HETATM 8 P P 44G . . . P 4 91.468 -59.779 -32.524 1 109.75 ? P 44G 301 A 1 HETATM 9 O O1P 44G . . . P 4 91.193 -58.51 -33.289 1 109.75 ? O1P 44G 301 A 1 HETATM 10 O O2P 44G . . . P 4 90.871 -59.686 -31.142 1 109.75 ? O2P 44G 301 A 1 HETATM 11 O O4P 44G . . . P 4 90.816 -60.993 -33.256 1 109.75 ? O4P 44G 301 A 1 HETATM 12 C C4 44G . . . P 4 90.943 -62.258 -32.653 1 109.75 ? C4 44G 301 A 1 HETATM 13 C C5 44G . . . P 4 90.507 -63.289 -33.612 1 109.75 ? C5 44G 301 A 1 HETATM 14 O O5 44G . . . P 4 90.009 -64.396 -32.937 1 109.75 ? O5 44G 301 A 1 HETATM 15 C C6 44G . . . P 4 91.641 -63.78 -34.482 1 109.75 ? C6 44G 301 A 1 HETATM 16 O O6 44G . . . P 4 91.846 -65.143 -34.558 1 109.75 ? O6 44G 301 A 1 HETATM 17 C C10 44G . . . P 4 95.436 -61.666 -32.67 1 109.75 ? C10 44G 301 A 1 HETATM 18 O O1 44G . . . P 4 96.509 -61.551 -31.755 1 109.75 ? O1 44G 301 A 1 HETATM 19 C C12 44G . . . P 4 97.412 -62.606 -31.623 1 109.75 ? C12 44G 301 A 1 HETATM 20 C C13 44G . . . P 4 98.417 -62.625 -30.449 1 109.75 ? C13 44G 301 A 1 HETATM 21 O O3 44G . . . P 4 97.493 -63.457 -32.511 1 109.75 ? O3 44G 301 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #