data_4XCY # _model_server_result.job_id Cc6PM1r6o-bk5tgrpMT0xA _model_server_result.datetime_utc '2024-11-23 13:52:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xcy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":302}' # _entry.id 4XCY # _exptl.entry_id 4XCY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4XCY _cell.length_a 150.22 _cell.length_b 150.22 _cell.length_c 472.16 _cell.Z_PDB 72 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XCY _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 PISA dimeric 2 author_and_software_defined_assembly 5 PISA dimeric 2 author_and_software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,M,N 1 1 C,D,O,P,Q 2 1 E,F,R 3 1 G,H,S 4 1 I,J 5 1 K,L,T 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id Q _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 89 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 135 L CYS 134 1_555 A SG CYS 195 L CYS 194 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 135 L CYS 134 1_555 A SG CYS 195 L CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 B SG CYS 154 H CYS 142 1_555 B SG CYS 210 H CYS 208 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 B SG CYS 154 H CYS 142 1_555 B SG CYS 210 H CYS 208 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.037 ? disulf ? disulf8 C SG CYS 23 B CYS 23 1_555 C SG CYS 89 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf9 C SG CYS 135 B CYS 134 1_555 C SG CYS 195 B CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.035 ? disulf ? disulf10 C SG CYS 135 B CYS 134 1_555 C SG CYS 195 B CYS 194 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.033 ? disulf ? disulf11 D SG CYS 22 A CYS 22 1_555 D SG CYS 96 A CYS 92 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.034 ? disulf ? disulf12 D SG CYS 22 A CYS 22 1_555 D SG CYS 96 A CYS 92 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 D SG CYS 154 A CYS 142 1_555 D SG CYS 210 A CYS 208 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.028 ? disulf ? disulf14 D SG CYS 154 A CYS 142 1_555 D SG CYS 210 A CYS 208 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.036 ? disulf ? disulf15 E SG CYS 23 D CYS 23 1_555 E SG CYS 89 D CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf16 E SG CYS 135 D CYS 134 1_555 E SG CYS 195 D CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf17 F SG CYS 22 C CYS 22 1_555 F SG CYS 96 C CYS 92 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.029 ? disulf ? disulf18 F SG CYS 22 C CYS 22 1_555 F SG CYS 96 C CYS 92 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.032 ? disulf ? disulf19 F SG CYS 154 C CYS 142 1_555 F SG CYS 210 C CYS 208 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.032 ? disulf ? disulf20 F SG CYS 154 C CYS 142 1_555 F SG CYS 210 C CYS 208 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.038 ? disulf ? disulf21 G SG CYS 23 F CYS 23 1_555 G SG CYS 89 F CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf22 G SG CYS 135 F CYS 134 1_555 G SG CYS 195 F CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.036 ? disulf ? disulf23 G SG CYS 135 F CYS 134 1_555 G SG CYS 195 F CYS 194 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.031 ? disulf ? disulf24 H SG CYS 22 E CYS 22 1_555 H SG CYS 96 E CYS 92 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.031 ? disulf ? disulf25 H SG CYS 22 E CYS 22 1_555 H SG CYS 96 E CYS 92 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.032 ? disulf ? disulf26 H SG CYS 154 E CYS 142 1_555 H SG CYS 210 E CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf27 I SG CYS 23 I CYS 23 1_555 I SG CYS 89 I CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf28 I SG CYS 135 I CYS 134 1_555 I SG CYS 195 I CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf29 J SG CYS 22 G CYS 22 1_555 J SG CYS 96 G CYS 92 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.031 ? disulf ? disulf30 J SG CYS 22 G CYS 22 1_555 J SG CYS 96 G CYS 92 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.033 ? disulf ? disulf31 J SG CYS 154 G CYS 142 1_555 J SG CYS 210 G CYS 208 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf32 J SG CYS 154 G CYS 142 1_555 J SG CYS 210 G CYS 208 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf33 K SG CYS 23 K CYS 23 1_555 K SG CYS 89 K CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf34 K SG CYS 135 K CYS 134 1_555 K SG CYS 195 K CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.034 ? disulf ? disulf35 K SG CYS 135 K CYS 134 1_555 K SG CYS 195 K CYS 194 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.033 ? disulf ? disulf36 L SG CYS 22 J CYS 22 1_555 L SG CYS 96 J CYS 92 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.032 ? disulf ? disulf37 L SG CYS 22 J CYS 22 1_555 L SG CYS 96 J CYS 92 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.03 ? disulf ? disulf38 L SG CYS 154 J CYS 142 1_555 L SG CYS 210 J CYS 208 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf39 L SG CYS 154 J CYS 142 1_555 L SG CYS 210 J CYS 208 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 192 n n C1 C2 GOL sing 193 n n C1 H11 GOL sing 194 n n C1 H12 GOL sing 195 n n O1 HO1 GOL sing 196 n n C2 O2 GOL sing 197 n n C2 C3 GOL sing 198 n n C2 H2 GOL sing 199 n n O2 HO2 GOL sing 200 n n C3 O3 GOL sing 201 n n C3 H31 GOL sing 202 n n C3 H32 GOL sing 203 n n O3 HO3 GOL sing 204 n n # _atom_sites.entry_id 4XCY _atom_sites.fract_transf_matrix[1][1] 0.006657 _atom_sites.fract_transf_matrix[1][2] 0.003843 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007687 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002118 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 UNL L 1 301 301 UNL UNL . N 4 44G H 1 301 301 44G 44G . O 3 UNL B 1 301 301 UNL UNL . P 4 44G A 1 301 301 44G 44G . Q 5 GOL A 1 302 302 GOL GOL . R 3 UNL D 1 301 301 UNL UNL . S 3 UNL F 1 301 301 UNL UNL . T 3 UNL K 1 301 301 UNL UNL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . Q 5 76.136 -37.854 -30.157 1 49.89 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . Q 5 77.138 -38.096 -31.119 1 49.89 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . Q 5 76.639 -36.832 -29.144 1 49.89 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . Q 5 77.96 -37.148 -28.767 1 49.89 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . Q 5 75.735 -36.855 -27.917 1 49.89 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . Q 5 76.524 -36.772 -26.751 1 49.89 ? O3 GOL 302 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 6 #