data_4XDE # _model_server_result.job_id e2HWkQZzgQ-Lw_Saf-QgPA _model_server_result.datetime_utc '2025-07-12 21:18:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xde # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 4XDE # _exptl.entry_id 4XDE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.095 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ISOPROPYL ALCOHOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XDE _cell.length_a 124.126 _cell.length_b 124.126 _cell.length_c 38.145 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XDE _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 27 A CYS 378 1_555 A SG CYS 43 A CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? disulf ? disulf2 A SG CYS 35 A CYS 386 1_555 A SG CYS 105 A CYS 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? disulf ? disulf3 A SG CYS 66 A CYS 417 1_555 A SG CYS 69 A CYS 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? disulf ? disulf4 A SG CYS 130 A CYS 481 1_555 A SG CYS 199 A CYS 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 A SG CYS 162 A CYS 513 1_555 A SG CYS 178 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 A SG CYS 189 A CYS 540 1_555 A SG CYS 220 A CYS 571 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? # _chem_comp.formula 'C3 H8 O' _chem_comp.formula_weight 60.095 _chem_comp.id IPA _chem_comp.mon_nstd_flag . _chem_comp.name 'ISOPROPYL ALCOHOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2-PROPANOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IPA sing 190 n n C1 H11 IPA sing 191 n n C1 H12 IPA sing 192 n n C1 H13 IPA sing 193 n n C2 C3 IPA sing 194 n n C2 O2 IPA sing 195 n n C2 H2 IPA sing 196 n n C3 H31 IPA sing 197 n n C3 H32 IPA sing 198 n n C3 H33 IPA sing 199 n n O2 HO2 IPA sing 200 n n # _atom_sites.entry_id 4XDE _atom_sites.fract_transf_matrix[1][1] 0.008056 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008056 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026216 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IPA A 1 701 701 IPA IPA . C 2 IPA A 1 702 702 IPA IPA . D 3 FLC A 1 703 801 FLC FLC . E 4 HOH A 1 801 1080 HOH HOH . E 4 HOH A 2 802 1056 HOH HOH . E 4 HOH A 3 803 1078 HOH HOH . E 4 HOH A 4 804 1085 HOH HOH . E 4 HOH A 5 805 1058 HOH HOH . E 4 HOH A 6 806 1057 HOH HOH . E 4 HOH A 7 807 1017 HOH HOH . E 4 HOH A 8 808 1042 HOH HOH . E 4 HOH A 9 809 1031 HOH HOH . E 4 HOH A 10 810 1079 HOH HOH . E 4 HOH A 11 811 1045 HOH HOH . E 4 HOH A 12 812 1007 HOH HOH . E 4 HOH A 13 813 1051 HOH HOH . E 4 HOH A 14 814 1027 HOH HOH . E 4 HOH A 15 815 1032 HOH HOH . E 4 HOH A 16 816 1034 HOH HOH . E 4 HOH A 17 817 1076 HOH HOH . E 4 HOH A 18 818 1030 HOH HOH . E 4 HOH A 19 819 1024 HOH HOH . E 4 HOH A 20 820 1009 HOH HOH . E 4 HOH A 21 821 1073 HOH HOH . E 4 HOH A 22 822 1088 HOH HOH . E 4 HOH A 23 823 1061 HOH HOH . E 4 HOH A 24 824 1005 HOH HOH . E 4 HOH A 25 825 1077 HOH HOH . E 4 HOH A 26 826 1087 HOH HOH . E 4 HOH A 27 827 1037 HOH HOH . E 4 HOH A 28 828 1049 HOH HOH . E 4 HOH A 29 829 1021 HOH HOH . E 4 HOH A 30 830 1052 HOH HOH . E 4 HOH A 31 831 1094 HOH HOH . E 4 HOH A 32 832 1097 HOH HOH . E 4 HOH A 33 833 1020 HOH HOH . E 4 HOH A 34 834 1083 HOH HOH . E 4 HOH A 35 835 1086 HOH HOH . E 4 HOH A 36 836 1062 HOH HOH . E 4 HOH A 37 837 1068 HOH HOH . E 4 HOH A 38 838 1089 HOH HOH . E 4 HOH A 39 839 1070 HOH HOH . E 4 HOH A 40 840 1050 HOH HOH . E 4 HOH A 41 841 1071 HOH HOH . E 4 HOH A 42 842 1053 HOH HOH . E 4 HOH A 43 843 1082 HOH HOH . E 4 HOH A 44 844 1001 HOH HOH . E 4 HOH A 45 845 1002 HOH HOH . E 4 HOH A 46 846 1003 HOH HOH . E 4 HOH A 47 847 1004 HOH HOH . E 4 HOH A 48 848 1006 HOH HOH . E 4 HOH A 49 849 1008 HOH HOH . E 4 HOH A 50 850 1010 HOH HOH . E 4 HOH A 51 851 1011 HOH HOH . E 4 HOH A 52 852 1012 HOH HOH . E 4 HOH A 53 853 1013 HOH HOH . E 4 HOH A 54 854 1014 HOH HOH . E 4 HOH A 55 855 1015 HOH HOH . E 4 HOH A 56 856 1016 HOH HOH . E 4 HOH A 57 857 1018 HOH HOH . E 4 HOH A 58 858 1019 HOH HOH . E 4 HOH A 59 859 1022 HOH HOH . E 4 HOH A 60 860 1023 HOH HOH . E 4 HOH A 61 861 1025 HOH HOH . E 4 HOH A 62 862 1026 HOH HOH . E 4 HOH A 63 863 1028 HOH HOH . E 4 HOH A 64 864 1029 HOH HOH . E 4 HOH A 65 865 1033 HOH HOH . E 4 HOH A 66 866 1035 HOH HOH . E 4 HOH A 67 867 1036 HOH HOH . E 4 HOH A 68 868 1038 HOH HOH . E 4 HOH A 69 869 1039 HOH HOH . E 4 HOH A 70 870 1040 HOH HOH . E 4 HOH A 71 871 1041 HOH HOH . E 4 HOH A 72 872 1043 HOH HOH . E 4 HOH A 73 873 1044 HOH HOH . E 4 HOH A 74 874 1046 HOH HOH . E 4 HOH A 75 875 1047 HOH HOH . E 4 HOH A 76 876 1048 HOH HOH . E 4 HOH A 77 877 1054 HOH HOH . E 4 HOH A 78 878 1055 HOH HOH . E 4 HOH A 79 879 1059 HOH HOH . E 4 HOH A 80 880 1060 HOH HOH . E 4 HOH A 81 881 1063 HOH HOH . E 4 HOH A 82 882 1064 HOH HOH . E 4 HOH A 83 883 1065 HOH HOH . E 4 HOH A 84 884 1066 HOH HOH . E 4 HOH A 85 885 1067 HOH HOH . E 4 HOH A 86 886 1069 HOH HOH . E 4 HOH A 87 887 1072 HOH HOH . E 4 HOH A 88 888 1074 HOH HOH . E 4 HOH A 89 889 1075 HOH HOH . E 4 HOH A 90 890 1081 HOH HOH . E 4 HOH A 91 891 1084 HOH HOH . E 4 HOH A 92 892 1090 HOH HOH . E 4 HOH A 93 893 1091 HOH HOH . E 4 HOH A 94 894 1092 HOH HOH . E 4 HOH A 95 895 1093 HOH HOH . E 4 HOH A 96 896 1095 HOH HOH . E 4 HOH A 97 897 1096 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IPA . . . B 2 4.504 -39.227 6.104 1 23.87 ? C1 IPA 701 A 1 HETATM 2 C C2 IPA . . . B 2 5.497 -39.641 7.165 1 23.3 ? C2 IPA 701 A 1 HETATM 3 C C3 IPA . . . B 2 6.018 -38.469 7.995 1 21.62 ? C3 IPA 701 A 1 HETATM 4 O O2 IPA . . . B 2 4.761 -40.574 7.959 1 25.36 ? O2 IPA 701 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #