data_4XE1 # _model_server_result.job_id 7I4MSGZIHEyQCPEursZqcw _model_server_result.datetime_utc '2024-10-18 16:19:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xe1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 4XE1 # _exptl.entry_id 4XE1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.33 _cell.angle_gamma 90 _cell.entry_id 4XE1 _cell.length_a 42.212 _cell.length_b 41.68 _cell.length_c 71.731 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XE1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 96 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc2 A NE2 HIS 98 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc3 A ND1 HIS 121 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc4 A O GLN 138 A GLN 137 1_555 E HG HGB . A HGB 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? metalc ? metalc5 A O GLU 206 A GLU 205 1_555 E HG HGB . A HGB 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.115 ? metalc ? metalc6 B ZN ZN . A ZN 301 1_555 F N1 IL5 . A IL5 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4XE1 _atom_sites.fract_transf_matrix[1][1] 0.02369 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006052 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023992 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014389 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 262 ZN ZN . C 3 GOL A 1 302 266 GOL GOL . D 3 GOL A 1 303 267 GOL GOL . E 4 HGB A 1 304 300 HGB HGB . F 5 IL5 A 1 305 1000 IL5 IL5 . G 6 HOH A 1 401 1066 HOH HOH . G 6 HOH A 2 402 1104 HOH HOH . G 6 HOH A 3 403 1166 HOH HOH . G 6 HOH A 4 404 1217 HOH HOH . G 6 HOH A 5 405 1157 HOH HOH . G 6 HOH A 6 406 1114 HOH HOH . G 6 HOH A 7 407 1194 HOH HOH . G 6 HOH A 8 408 1021 HOH HOH . G 6 HOH A 9 409 1096 HOH HOH . G 6 HOH A 10 410 1113 HOH HOH . G 6 HOH A 11 411 1202 HOH HOH . G 6 HOH A 12 412 1190 HOH HOH . G 6 HOH A 13 413 1141 HOH HOH . G 6 HOH A 14 414 1097 HOH HOH . G 6 HOH A 15 415 1169 HOH HOH . G 6 HOH A 16 416 1020 HOH HOH . G 6 HOH A 17 417 1033 HOH HOH . G 6 HOH A 18 418 1043 HOH HOH . G 6 HOH A 19 419 1012 HOH HOH . G 6 HOH A 20 420 1130 HOH HOH . G 6 HOH A 21 421 1074 HOH HOH . G 6 HOH A 22 422 1173 HOH HOH . G 6 HOH A 23 423 1112 HOH HOH . G 6 HOH A 24 424 1219 HOH HOH . G 6 HOH A 25 425 1060 HOH HOH . G 6 HOH A 26 426 1107 HOH HOH . G 6 HOH A 27 427 1155 HOH HOH . G 6 HOH A 28 428 1064 HOH HOH . G 6 HOH A 29 429 1099 HOH HOH . G 6 HOH A 30 430 1027 HOH HOH . G 6 HOH A 31 431 1128 HOH HOH . G 6 HOH A 32 432 1044 HOH HOH . G 6 HOH A 33 433 1092 HOH HOH . G 6 HOH A 34 434 1129 HOH HOH . G 6 HOH A 35 435 1214 HOH HOH . G 6 HOH A 36 436 1065 HOH HOH . G 6 HOH A 37 437 1053 HOH HOH . G 6 HOH A 38 438 1120 HOH HOH . G 6 HOH A 39 439 1061 HOH HOH . G 6 HOH A 40 440 1073 HOH HOH . G 6 HOH A 41 441 1158 HOH HOH . G 6 HOH A 42 442 1136 HOH HOH . G 6 HOH A 43 443 1090 HOH HOH . G 6 HOH A 44 444 1005 HOH HOH . G 6 HOH A 45 445 1025 HOH HOH . G 6 HOH A 46 446 1187 HOH HOH . G 6 HOH A 47 447 1100 HOH HOH . G 6 HOH A 48 448 1083 HOH HOH . G 6 HOH A 49 449 1049 HOH HOH . G 6 HOH A 50 450 1084 HOH HOH . G 6 HOH A 51 451 1059 HOH HOH . G 6 HOH A 52 452 1160 HOH HOH . G 6 HOH A 53 453 1070 HOH HOH . G 6 HOH A 54 454 1164 HOH HOH . G 6 HOH A 55 455 1126 HOH HOH . G 6 HOH A 56 456 1145 HOH HOH . G 6 HOH A 57 457 1193 HOH HOH . G 6 HOH A 58 458 1108 HOH HOH . G 6 HOH A 59 459 1082 HOH HOH . G 6 HOH A 60 460 1124 HOH HOH . G 6 HOH A 61 461 1013 HOH HOH . G 6 HOH A 62 462 1177 HOH HOH . G 6 HOH A 63 463 1075 HOH HOH . G 6 HOH A 64 464 1093 HOH HOH . G 6 HOH A 65 465 1081 HOH HOH . G 6 HOH A 66 466 1088 HOH HOH . G 6 HOH A 67 467 1122 HOH HOH . G 6 HOH A 68 468 1139 HOH HOH . G 6 HOH A 69 469 1062 HOH HOH . G 6 HOH A 70 470 1180 HOH HOH . G 6 HOH A 71 471 1032 HOH HOH . G 6 HOH A 72 472 1199 HOH HOH . G 6 HOH A 73 473 1116 HOH HOH . G 6 HOH A 74 474 1161 HOH HOH . G 6 HOH A 75 475 1051 HOH HOH . G 6 HOH A 76 476 1209 HOH HOH . G 6 HOH A 77 477 1118 HOH HOH . G 6 HOH A 78 478 1154 HOH HOH . G 6 HOH A 79 479 1125 HOH HOH . G 6 HOH A 80 480 1057 HOH HOH . G 6 HOH A 81 481 1055 HOH HOH . G 6 HOH A 82 482 1117 HOH HOH . G 6 HOH A 83 483 1109 HOH HOH . G 6 HOH A 84 484 1030 HOH HOH . G 6 HOH A 85 485 1178 HOH HOH . G 6 HOH A 86 486 1142 HOH HOH . G 6 HOH A 87 487 1086 HOH HOH . G 6 HOH A 88 488 1052 HOH HOH . G 6 HOH A 89 489 1149 HOH HOH . G 6 HOH A 90 490 1198 HOH HOH . G 6 HOH A 91 491 1072 HOH HOH . G 6 HOH A 92 492 1206 HOH HOH . G 6 HOH A 93 493 1192 HOH HOH . G 6 HOH A 94 494 1210 HOH HOH . G 6 HOH A 95 495 1215 HOH HOH . G 6 HOH A 96 496 1211 HOH HOH . G 6 HOH A 97 497 1165 HOH HOH . G 6 HOH A 98 498 1186 HOH HOH . G 6 HOH A 99 499 1094 HOH HOH . G 6 HOH A 100 500 1147 HOH HOH . G 6 HOH A 101 501 1213 HOH HOH . G 6 HOH A 102 502 1212 HOH HOH . G 6 HOH A 103 503 1001 HOH HOH . G 6 HOH A 104 504 1002 HOH HOH . G 6 HOH A 105 505 1003 HOH HOH . G 6 HOH A 106 506 1004 HOH HOH . G 6 HOH A 107 507 1006 HOH HOH . G 6 HOH A 108 508 1007 HOH HOH . G 6 HOH A 109 509 1008 HOH HOH . G 6 HOH A 110 510 1009 HOH HOH . G 6 HOH A 111 511 1010 HOH HOH . G 6 HOH A 112 512 1011 HOH HOH . G 6 HOH A 113 513 1014 HOH HOH . G 6 HOH A 114 514 1015 HOH HOH . G 6 HOH A 115 515 1016 HOH HOH . G 6 HOH A 116 516 1017 HOH HOH . G 6 HOH A 117 517 1018 HOH HOH . G 6 HOH A 118 518 1019 HOH HOH . G 6 HOH A 119 519 1022 HOH HOH . G 6 HOH A 120 520 1023 HOH HOH . G 6 HOH A 121 521 1024 HOH HOH . G 6 HOH A 122 522 1026 HOH HOH . G 6 HOH A 123 523 1028 HOH HOH . G 6 HOH A 124 524 1029 HOH HOH . G 6 HOH A 125 525 1031 HOH HOH . G 6 HOH A 126 526 1034 HOH HOH . G 6 HOH A 127 527 1035 HOH HOH . G 6 HOH A 128 528 1036 HOH HOH . G 6 HOH A 129 529 1037 HOH HOH . G 6 HOH A 130 530 1038 HOH HOH . G 6 HOH A 131 531 1039 HOH HOH . G 6 HOH A 132 532 1040 HOH HOH . G 6 HOH A 133 533 1041 HOH HOH . G 6 HOH A 134 534 1042 HOH HOH . G 6 HOH A 135 535 1045 HOH HOH . G 6 HOH A 136 536 1046 HOH HOH . G 6 HOH A 137 537 1047 HOH HOH . G 6 HOH A 138 538 1048 HOH HOH . G 6 HOH A 139 539 1050 HOH HOH . G 6 HOH A 140 540 1054 HOH HOH . G 6 HOH A 141 541 1056 HOH HOH . G 6 HOH A 142 542 1058 HOH HOH . G 6 HOH A 143 543 1063 HOH HOH . G 6 HOH A 144 544 1067 HOH HOH . G 6 HOH A 145 545 1068 HOH HOH . G 6 HOH A 146 546 1069 HOH HOH . G 6 HOH A 147 547 1071 HOH HOH . G 6 HOH A 148 548 1076 HOH HOH . G 6 HOH A 149 549 1077 HOH HOH . G 6 HOH A 150 550 1078 HOH HOH . G 6 HOH A 151 551 1079 HOH HOH . G 6 HOH A 152 552 1080 HOH HOH . G 6 HOH A 153 553 1085 HOH HOH . G 6 HOH A 154 554 1087 HOH HOH . G 6 HOH A 155 555 1089 HOH HOH . G 6 HOH A 156 556 1091 HOH HOH . G 6 HOH A 157 557 1095 HOH HOH . G 6 HOH A 158 558 1098 HOH HOH . G 6 HOH A 159 559 1101 HOH HOH . G 6 HOH A 160 560 1102 HOH HOH . G 6 HOH A 161 561 1103 HOH HOH . G 6 HOH A 162 562 1105 HOH HOH . G 6 HOH A 163 563 1106 HOH HOH . G 6 HOH A 164 564 1110 HOH HOH . G 6 HOH A 165 565 1111 HOH HOH . G 6 HOH A 166 566 1115 HOH HOH . G 6 HOH A 167 567 1119 HOH HOH . G 6 HOH A 168 568 1121 HOH HOH . G 6 HOH A 169 569 1123 HOH HOH . G 6 HOH A 170 570 1127 HOH HOH . G 6 HOH A 171 571 1131 HOH HOH . G 6 HOH A 172 572 1132 HOH HOH . G 6 HOH A 173 573 1133 HOH HOH . G 6 HOH A 174 574 1134 HOH HOH . G 6 HOH A 175 575 1135 HOH HOH . G 6 HOH A 176 576 1137 HOH HOH . G 6 HOH A 177 577 1138 HOH HOH . G 6 HOH A 178 578 1140 HOH HOH . G 6 HOH A 179 579 1143 HOH HOH . G 6 HOH A 180 580 1144 HOH HOH . G 6 HOH A 181 581 1146 HOH HOH . G 6 HOH A 182 582 1148 HOH HOH . G 6 HOH A 183 583 1150 HOH HOH . G 6 HOH A 184 584 1151 HOH HOH . G 6 HOH A 185 585 1152 HOH HOH . G 6 HOH A 186 586 1153 HOH HOH . G 6 HOH A 187 587 1156 HOH HOH . G 6 HOH A 188 588 1159 HOH HOH . G 6 HOH A 189 589 1162 HOH HOH . G 6 HOH A 190 590 1163 HOH HOH . G 6 HOH A 191 591 1167 HOH HOH . G 6 HOH A 192 592 1168 HOH HOH . G 6 HOH A 193 593 1170 HOH HOH . G 6 HOH A 194 594 1171 HOH HOH . G 6 HOH A 195 595 1172 HOH HOH . G 6 HOH A 196 596 1174 HOH HOH . G 6 HOH A 197 597 1175 HOH HOH . G 6 HOH A 198 598 1176 HOH HOH . G 6 HOH A 199 599 1179 HOH HOH . G 6 HOH A 200 600 1181 HOH HOH . G 6 HOH A 201 601 1182 HOH HOH . G 6 HOH A 202 602 1183 HOH HOH . G 6 HOH A 203 603 1184 HOH HOH . G 6 HOH A 204 604 1185 HOH HOH . G 6 HOH A 205 605 1188 HOH HOH . G 6 HOH A 206 606 1189 HOH HOH . G 6 HOH A 207 607 1191 HOH HOH . G 6 HOH A 208 608 1195 HOH HOH . G 6 HOH A 209 609 1196 HOH HOH . G 6 HOH A 210 610 1197 HOH HOH . G 6 HOH A 211 611 1200 HOH HOH . G 6 HOH A 212 612 1201 HOH HOH . G 6 HOH A 213 613 1203 HOH HOH . G 6 HOH A 214 614 1204 HOH HOH . G 6 HOH A 215 615 1205 HOH HOH . G 6 HOH A 216 616 1207 HOH HOH . G 6 HOH A 217 617 1208 HOH HOH . G 6 HOH A 218 618 1216 HOH HOH . G 6 HOH A 219 619 1218 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -4.307 1.867 11.282 1 13.15 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . C 3 -5.058 2.954 10.761 1 15.11 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . C 3 -5.028 0.557 11.072 1 12.66 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . C 3 -5.168 0.319 9.67 1 13.07 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . C 3 -4.287 -0.596 11.707 1 12.54 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . C 3 -3.001 -0.77 11.129 1 10.46 ? O3 GOL 302 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #