data_4XE3
#
_model_server_result.job_id            Q1a4yFta1eVN3TI8BO9vhw 
_model_server_result.datetime_utc      '2024-10-11 01:30:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xe3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":501}' 
#
_entry.id    4XE3 
#
_exptl.entry_id    4XE3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4XE3 
_cell.length_a            115.937 
_cell.length_b            117.379 
_cell.length_c            174.664 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XE3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,Q 1 1 
B,K,L,M,N,O,P,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 356 A CYS 356 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc2 C FE HEM . A HEM 501 1_555 D NAN CL6 . A CL6 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? 
metalc ? metalc3 B SG CYS 356 B CYS 356 1_555 K FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc4 K FE HEM . B HEM 501 1_555 L NAN CL6 . B CL6 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 174 n n 
CHA C4D HEM doub 175 n n 
CHA HHA HEM sing 176 n n 
CHB C4A HEM sing 177 n n 
CHB C1B HEM doub 178 n n 
CHB HHB HEM sing 179 n n 
CHC C4B HEM sing 180 n n 
CHC C1C HEM doub 181 n n 
CHC HHC HEM sing 182 n n 
CHD C4C HEM doub 183 n n 
CHD C1D HEM sing 184 n n 
CHD HHD HEM sing 185 n n 
C1A C2A HEM doub 186 n y 
C1A NA HEM sing 187 n y 
C2A C3A HEM sing 188 n y 
C2A CAA HEM sing 189 n n 
C3A C4A HEM doub 190 n y 
C3A CMA HEM sing 191 n n 
C4A NA HEM sing 192 n y 
CMA HMA HEM sing 193 n n 
CMA HMAA HEM sing 194 n n 
CMA HMAB HEM sing 195 n n 
CAA CBA HEM sing 196 n n 
CAA HAA HEM sing 197 n n 
CAA HAAA HEM sing 198 n n 
CBA CGA HEM sing 199 n n 
CBA HBA HEM sing 200 n n 
CBA HBAA HEM sing 201 n n 
CGA O1A HEM doub 202 n n 
CGA O2A HEM sing 203 n n 
C1B C2B HEM sing 204 n n 
C1B NB HEM sing 205 n n 
C2B C3B HEM doub 206 n n 
C2B CMB HEM sing 207 n n 
C3B C4B HEM sing 208 n n 
C3B CAB HEM sing 209 n n 
C4B NB HEM doub 210 n n 
CMB HMB HEM sing 211 n n 
CMB HMBA HEM sing 212 n n 
CMB HMBB HEM sing 213 n n 
CAB CBB HEM doub 214 n n 
CAB HAB HEM sing 215 n n 
CBB HBB HEM sing 216 n n 
CBB HBBA HEM sing 217 n n 
C1C C2C HEM sing 218 n y 
C1C NC HEM sing 219 n y 
C2C C3C HEM doub 220 n y 
C2C CMC HEM sing 221 n n 
C3C C4C HEM sing 222 n y 
C3C CAC HEM sing 223 n n 
C4C NC HEM sing 224 n y 
CMC HMC HEM sing 225 n n 
CMC HMCA HEM sing 226 n n 
CMC HMCB HEM sing 227 n n 
CAC CBC HEM doub 228 n n 
CAC HAC HEM sing 229 n n 
CBC HBC HEM sing 230 n n 
CBC HBCA HEM sing 231 n n 
C1D C2D HEM sing 232 n n 
C1D ND HEM doub 233 n n 
C2D C3D HEM doub 234 n n 
C2D CMD HEM sing 235 n n 
C3D C4D HEM sing 236 n n 
C3D CAD HEM sing 237 n n 
C4D ND HEM sing 238 n n 
CMD HMD HEM sing 239 n n 
CMD HMDA HEM sing 240 n n 
CMD HMDB HEM sing 241 n n 
CAD CBD HEM sing 242 n n 
CAD HAD HEM sing 243 n n 
CAD HADA HEM sing 244 n n 
CBD CGD HEM sing 245 n n 
CBD HBD HEM sing 246 n n 
CBD HBDA HEM sing 247 n n 
CGD O1D HEM doub 248 n n 
CGD O2D HEM sing 249 n n 
O2A H2A HEM sing 250 n n 
O2D H2D HEM sing 251 n n 
FE NA HEM sing 252 n n 
FE NB HEM sing 253 n n 
FE NC HEM sing 254 n n 
FE ND HEM sing 255 n n 
#
_atom_sites.entry_id                     4XE3 
_atom_sites.fract_transf_matrix[1][1]    0.008625 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008519 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005725 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 501 408 HEM HEM . 
D 3 CL6 A 1 502 409 CL6 CL6 . 
E 4 SO4 A 1 503 2 SO4 SO4 . 
F 4 SO4 A 1 504 3 SO4 SO4 . 
G 4 SO4 A 1 505 4 SO4 SO4 . 
H 4 SO4 A 1 506 5 SO4 SO4 . 
I 4 SO4 A 1 507 7 SO4 SO4 . 
J 4 SO4 A 1 508 9 SO4 SO4 . 
K 2 HEM B 1 501 408 HEM HEM . 
L 3 CL6 B 1 502 409 CL6 CL6 . 
M 4 SO4 B 1 503 1 SO4 SO4 . 
N 4 SO4 B 1 504 6 SO4 SO4 . 
O 4 SO4 B 1 505 8 SO4 SO4 . 
P 4 SO4 B 1 506 10 SO4 SO4 . 
Q 5 HOH A 1 601 59 HOH HOH . 
Q 5 HOH A 2 602 13 HOH HOH . 
Q 5 HOH A 3 603 1 HOH HOH . 
Q 5 HOH A 4 604 2 HOH HOH . 
Q 5 HOH A 5 605 4 HOH HOH . 
Q 5 HOH A 6 606 5 HOH HOH . 
Q 5 HOH A 7 607 6 HOH HOH . 
Q 5 HOH A 8 608 7 HOH HOH . 
Q 5 HOH A 9 609 8 HOH HOH . 
Q 5 HOH A 10 610 9 HOH HOH . 
Q 5 HOH A 11 611 21 HOH HOH . 
Q 5 HOH A 12 612 22 HOH HOH . 
Q 5 HOH A 13 613 24 HOH HOH . 
Q 5 HOH A 14 614 25 HOH HOH . 
Q 5 HOH A 15 615 27 HOH HOH . 
Q 5 HOH A 16 616 28 HOH HOH . 
Q 5 HOH A 17 617 29 HOH HOH . 
Q 5 HOH A 18 618 30 HOH HOH . 
Q 5 HOH A 19 619 31 HOH HOH . 
Q 5 HOH A 20 620 32 HOH HOH . 
Q 5 HOH A 21 621 33 HOH HOH . 
Q 5 HOH A 22 622 34 HOH HOH . 
Q 5 HOH A 23 623 35 HOH HOH . 
Q 5 HOH A 24 624 37 HOH HOH . 
Q 5 HOH A 25 625 43 HOH HOH . 
Q 5 HOH A 26 626 52 HOH HOH . 
Q 5 HOH A 27 627 56 HOH HOH . 
Q 5 HOH A 28 628 57 HOH HOH . 
R 5 HOH B 1 601 40 HOH HOH . 
R 5 HOH B 2 602 11 HOH HOH . 
R 5 HOH B 3 603 10 HOH HOH . 
R 5 HOH B 4 604 23 HOH HOH . 
R 5 HOH B 5 605 3 HOH HOH . 
R 5 HOH B 6 606 14 HOH HOH . 
R 5 HOH B 7 607 15 HOH HOH . 
R 5 HOH B 8 608 16 HOH HOH . 
R 5 HOH B 9 609 17 HOH HOH . 
R 5 HOH B 10 610 18 HOH HOH . 
R 5 HOH B 11 611 19 HOH HOH . 
R 5 HOH B 12 612 20 HOH HOH . 
R 5 HOH B 13 613 26 HOH HOH . 
R 5 HOH B 14 614 36 HOH HOH . 
R 5 HOH B 15 615 38 HOH HOH . 
R 5 HOH B 16 616 39 HOH HOH . 
R 5 HOH B 17 617 41 HOH HOH . 
R 5 HOH B 18 618 42 HOH HOH . 
R 5 HOH B 19 619 44 HOH HOH . 
R 5 HOH B 20 620 45 HOH HOH . 
R 5 HOH B 21 621 46 HOH HOH . 
R 5 HOH B 22 622 47 HOH HOH . 
R 5 HOH B 23 623 48 HOH HOH . 
R 5 HOH B 24 624 49 HOH HOH . 
R 5 HOH B 25 625 50 HOH HOH . 
R 5 HOH B 26 626 51 HOH HOH . 
R 5 HOH B 27 627 53 HOH HOH . 
R 5 HOH B 28 628 54 HOH HOH . 
R 5 HOH B 29 629 58 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . K 2 18.316 22.226 33.739 1 45.81 ? CHA HEM 501 B 1 
HETATM 2 C CHB HEM . . . K 2 16.533 25.484 30.768 1 43.63 ? CHB HEM 501 B 1 
HETATM 3 C CHC HEM . . . K 2 15.368 22.035 27.689 1 41.43 ? CHC HEM 501 B 1 
HETATM 4 C CHD HEM . . . K 2 16.595 18.709 30.937 1 41.47 ? CHD HEM 501 B 1 
HETATM 5 C C1A HEM . . . K 2 17.976 23.414 33.171 1 46.47 ? C1A HEM 501 B 1 
HETATM 6 C C2A HEM . . . K 2 18.285 24.693 33.709 1 48.36 ? C2A HEM 501 B 1 
HETATM 7 C C3A HEM . . . K 2 17.773 25.612 32.852 1 44.41 ? C3A HEM 501 B 1 
HETATM 8 C C4A HEM . . . K 2 17.145 24.89 31.815 1 42.85 ? C4A HEM 501 B 1 
HETATM 9 C CMA HEM . . . K 2 17.858 27.111 33.01 1 42.18 ? CMA HEM 501 B 1 
HETATM 10 C CAA HEM . . . K 2 19.071 24.994 34.97 1 49.73 ? CAA HEM 501 B 1 
HETATM 11 C CBA HEM . . . K 2 18.21 24.895 36.236 1 54.46 ? CBA HEM 501 B 1 
HETATM 12 C CGA HEM . . . K 2 19.013 25.329 37.453 1 57.47 ? CGA HEM 501 B 1 
HETATM 13 O O1A HEM . . . K 2 20.26 25.389 37.376 1 58.25 ? O1A HEM 501 B 1 
HETATM 14 O O2A HEM . . . K 2 18.457 25.633 38.545 1 55.46 ? O2A HEM 501 B 1 
HETATM 15 C C1B HEM . . . K 2 16.071 24.834 29.653 1 43.96 ? C1B HEM 501 B 1 
HETATM 16 C C2B HEM . . . K 2 15.552 25.518 28.503 1 45.54 ? C2B HEM 501 B 1 
HETATM 17 C C3B HEM . . . K 2 15.208 24.573 27.599 1 43.5 ? C3B HEM 501 B 1 
HETATM 18 C C4B HEM . . . K 2 15.552 23.279 28.25 1 42.24 ? C4B HEM 501 B 1 
HETATM 19 C CMB HEM . . . K 2 15.378 27.007 28.255 1 44.54 ? CMB HEM 501 B 1 
HETATM 20 C CAB HEM . . . K 2 14.598 24.936 26.302 1 46.25 ? CAB HEM 501 B 1 
HETATM 21 C CBB HEM . . . K 2 14.067 24.072 25.439 1 51.84 ? CBB HEM 501 B 1 
HETATM 22 C C1C HEM . . . K 2 15.609 20.81 28.281 1 38.85 ? C1C HEM 501 B 1 
HETATM 23 C C2C HEM . . . K 2 15.448 19.594 27.61 1 38.14 ? C2C HEM 501 B 1 
HETATM 24 C C3C HEM . . . K 2 15.785 18.63 28.548 1 41.16 ? C3C HEM 501 B 1 
HETATM 25 C C4C HEM . . . K 2 16.159 19.29 29.766 1 43.39 ? C4C HEM 501 B 1 
HETATM 26 C CMC HEM . . . K 2 15 19.452 26.153 1 35.89 ? CMC HEM 501 B 1 
HETATM 27 C CAC HEM . . . K 2 15.848 17.169 28.393 1 46.21 ? CAC HEM 501 B 1 
HETATM 28 C CBC HEM . . . K 2 15.744 16.554 27.22 1 52.71 ? CBC HEM 501 B 1 
HETATM 29 C C1D HEM . . . K 2 17.169 19.455 31.951 1 40.76 ? C1D HEM 501 B 1 
HETATM 30 C C2D HEM . . . K 2 17.752 18.804 33.116 1 41.75 ? C2D HEM 501 B 1 
HETATM 31 C C3D HEM . . . K 2 18.256 19.76 33.903 1 43.31 ? C3D HEM 501 B 1 
HETATM 32 C C4D HEM . . . K 2 17.961 21.006 33.188 1 43.35 ? C4D HEM 501 B 1 
HETATM 33 C CMD HEM . . . K 2 17.789 17.326 33.385 1 45.52 ? CMD HEM 501 B 1 
HETATM 34 C CAD HEM . . . K 2 18.968 19.597 35.245 1 46.09 ? CAD HEM 501 B 1 
HETATM 35 C CBD HEM . . . K 2 20.22 18.701 35.129 1 52.09 ? CBD HEM 501 B 1 
HETATM 36 C CGD HEM . . . K 2 21.222 18.798 36.279 1 52.81 ? CGD HEM 501 B 1 
HETATM 37 O O1D HEM . . . K 2 20.904 18.972 37.472 1 47.98 ? O1D HEM 501 B 1 
HETATM 38 O O2D HEM . . . K 2 22.434 18.681 36.04 1 56.36 ? O2D HEM 501 B 1 
HETATM 39 N NA HEM . . . K 2 17.248 23.558 32.033 1 44.07 ? NA HEM 501 B 1 
HETATM 40 N NB HEM . . . K 2 16.049 23.54 29.461 1 44.66 ? NB HEM 501 B 1 
HETATM 41 N NC HEM . . . K 2 16.029 20.61 29.556 1 40.25 ? NC HEM 501 B 1 
HETATM 42 N ND HEM . . . K 2 17.294 20.781 32.044 1 42.5 ? ND HEM 501 B 1 
HETATM 43 FE FE HEM . . . K 2 16.738 22.104 30.803 1 42.52 ? FE HEM 501 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#