data_4XE4
#
_model_server_result.job_id            pVjC5J4PZExohjwGsb7Zqg 
_model_server_result.datetime_utc      '2025-07-13 11:17:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xe4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":704}' 
#
_entry.id    4XE4 
#
_exptl.entry_id    4XE4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4XE4 
_cell.length_a            137.06 
_cell.length_b            137.06 
_cell.length_c            37.011 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XE4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    MONOMERIC 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 2 3 2 NAG NAG C1 O1 . O4 HO4 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 B 1 NAG A 701 NAG 
2 n B NAG 2 B 2 NAG A 702 NAG 
2 n B NAG 3 B 3 NAG A 703 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 25 A CYS 378 1_555 A SG CYS 41 A CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 33 A CYS 386 1_555 A SG CYS 103 A CYS 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
disulf ? disulf3 A SG CYS 64 A CYS 417 1_555 A SG CYS 67 A CYS 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
disulf ? disulf4 A SG CYS 128 A CYS 481 1_555 A SG CYS 197 A CYS 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf5 A SG CYS 160 A CYS 513 1_555 A SG CYS 176 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
covale ? covale1 A ND2 ASN 61 A ASN 414 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? 
covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 sing 
covale ? covale3 B O4 NAG . B NAG 2 1_555 B C1 NAG . B NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 sing 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4XE4 
_atom_sites.fract_transf_matrix[1][1]    0.007296 
_atom_sites.fract_transf_matrix[1][2]    0.004212 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008425 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.027019 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL A 1 704 801 GOL GOL . 
D 4 HOH A 1 801 1023 HOH HOH . 
D 4 HOH A 2 802 1043 HOH HOH . 
D 4 HOH A 3 803 1076 HOH HOH . 
D 4 HOH A 4 804 1068 HOH HOH . 
D 4 HOH A 5 805 1021 HOH HOH . 
D 4 HOH A 6 806 1064 HOH HOH . 
D 4 HOH A 7 807 1070 HOH HOH . 
D 4 HOH A 8 808 1048 HOH HOH . 
D 4 HOH A 9 809 1072 HOH HOH . 
D 4 HOH A 10 810 1024 HOH HOH . 
D 4 HOH A 11 811 1036 HOH HOH . 
D 4 HOH A 12 812 1041 HOH HOH . 
D 4 HOH A 13 813 1059 HOH HOH . 
D 4 HOH A 14 814 1049 HOH HOH . 
D 4 HOH A 15 815 1007 HOH HOH . 
D 4 HOH A 16 816 1051 HOH HOH . 
D 4 HOH A 17 817 1066 HOH HOH . 
D 4 HOH A 18 818 1054 HOH HOH . 
D 4 HOH A 19 819 1031 HOH HOH . 
D 4 HOH A 20 820 1035 HOH HOH . 
D 4 HOH A 21 821 1034 HOH HOH . 
D 4 HOH A 22 822 1053 HOH HOH . 
D 4 HOH A 23 823 1001 HOH HOH . 
D 4 HOH A 24 824 1002 HOH HOH . 
D 4 HOH A 25 825 1003 HOH HOH . 
D 4 HOH A 26 826 1004 HOH HOH . 
D 4 HOH A 27 827 1005 HOH HOH . 
D 4 HOH A 28 828 1006 HOH HOH . 
D 4 HOH A 29 829 1008 HOH HOH . 
D 4 HOH A 30 830 1009 HOH HOH . 
D 4 HOH A 31 831 1010 HOH HOH . 
D 4 HOH A 32 832 1011 HOH HOH . 
D 4 HOH A 33 833 1012 HOH HOH . 
D 4 HOH A 34 834 1013 HOH HOH . 
D 4 HOH A 35 835 1014 HOH HOH . 
D 4 HOH A 36 836 1015 HOH HOH . 
D 4 HOH A 37 837 1016 HOH HOH . 
D 4 HOH A 38 838 1017 HOH HOH . 
D 4 HOH A 39 839 1018 HOH HOH . 
D 4 HOH A 40 840 1019 HOH HOH . 
D 4 HOH A 41 841 1020 HOH HOH . 
D 4 HOH A 42 842 1022 HOH HOH . 
D 4 HOH A 43 843 1025 HOH HOH . 
D 4 HOH A 44 844 1026 HOH HOH . 
D 4 HOH A 45 845 1027 HOH HOH . 
D 4 HOH A 46 846 1028 HOH HOH . 
D 4 HOH A 47 847 1029 HOH HOH . 
D 4 HOH A 48 848 1030 HOH HOH . 
D 4 HOH A 49 849 1032 HOH HOH . 
D 4 HOH A 50 850 1033 HOH HOH . 
D 4 HOH A 51 851 1037 HOH HOH . 
D 4 HOH A 52 852 1038 HOH HOH . 
D 4 HOH A 53 853 1039 HOH HOH . 
D 4 HOH A 54 854 1040 HOH HOH . 
D 4 HOH A 55 855 1042 HOH HOH . 
D 4 HOH A 56 856 1044 HOH HOH . 
D 4 HOH A 57 857 1045 HOH HOH . 
D 4 HOH A 58 858 1046 HOH HOH . 
D 4 HOH A 59 859 1047 HOH HOH . 
D 4 HOH A 60 860 1050 HOH HOH . 
D 4 HOH A 61 861 1052 HOH HOH . 
D 4 HOH A 62 862 1055 HOH HOH . 
D 4 HOH A 63 863 1056 HOH HOH . 
D 4 HOH A 64 864 1057 HOH HOH . 
D 4 HOH A 65 865 1058 HOH HOH . 
D 4 HOH A 66 866 1060 HOH HOH . 
D 4 HOH A 67 867 1061 HOH HOH . 
D 4 HOH A 68 868 1062 HOH HOH . 
D 4 HOH A 69 869 1063 HOH HOH . 
D 4 HOH A 70 870 1065 HOH HOH . 
D 4 HOH A 71 871 1067 HOH HOH . 
D 4 HOH A 72 872 1069 HOH HOH . 
D 4 HOH A 73 873 1071 HOH HOH . 
D 4 HOH A 74 874 1073 HOH HOH . 
D 4 HOH A 75 875 1074 HOH HOH . 
D 4 HOH A 76 876 1075 HOH HOH . 
D 4 HOH A 77 877 1077 HOH HOH . 
D 4 HOH A 78 878 1078 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 59.111 -44.647 -24.985 1 66.3 ? C1 GOL 704 A 1 
HETATM 2 O O1 GOL . . . C 3 58.923 -43.388 -25.646 1 73.9 ? O1 GOL 704 A 1 
HETATM 3 C C2 GOL . . . C 3 60.45 -45.248 -25.359 1 81.52 ? C2 GOL 704 A 1 
HETATM 4 O O2 GOL . . . C 3 61.557 -44.46 -24.89 1 82.23 ? O2 GOL 704 A 1 
HETATM 5 C C3 GOL . . . C 3 60.558 -46.635 -24.758 1 80.65 ? C3 GOL 704 A 1 
HETATM 6 O O3 GOL . . . C 3 61.839 -47.168 -25.109 1 96.93 ? O3 GOL 704 A 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           226 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#